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BioLiP
Download all results in tab-seperated text for 46 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6kpj:A (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    2 6kpj:A (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    3 6kpj:A (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    4 6kpj:A (2.56) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    5 6kpj:B (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    6 6kpj:B (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    7 6kpj:B (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    8 6kpj:B (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    9 6kpj:C (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    10 6kpj:C (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    11 6kpj:C (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    12 6kpj:D (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    13 6kpj:D (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    14 6kpj:D (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    15 6kpj:D (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    16 6kpj:E (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    17 6kpj:E (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    18 6kpj:E (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    19 6kpj:F (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    20 6kpj:F (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    21 6kpj:F (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    22 6kpj:F (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    23 6kpj:G (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    24 6kpj:G (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    25 6kpj:G (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    26 6kpj:G (2.56) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    27 6kpj:H (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    28 6kpj:H (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    29 6kpj:H (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    30 6kpj:H (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    31 6kpj:I (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    32 6kpj:I (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    33 6kpj:I (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    34 6kpj:I (2.56) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    35 6kpj:J (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    36 6kpj:J (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    37 6kpj:J (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    38 6kpj:J (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    39 6kpj:K (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    40 6kpj:K (2.56) BS02 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    41 6kpj:K (2.56) BS03 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    42 6kpj:K (2.56) BS04 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    43 6kpj:L (2.56) BS01 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    44 6kpj:L (2.56) BS02 MG 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    45 6kpj:L (2.56) BS03 NAI 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    46 6kpj:L (2.56) BS04 9TY 1.1.1.86 GO:0004455 ... Q97YJ9 31829582
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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