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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 282 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6jo5:1 (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    2 6jo5:1 (2.9) BS02 CLA ? GO:0009765 ... Q05093 31182847
    3 6jo5:1 (2.9) BS03 CLA ? GO:0009765 ... Q05093 31182847
    4 6jo5:1 (2.9) BS04 CLA ? GO:0009765 ... Q05093 31182847
    5 6jo5:1 (2.9) BS05 CLA ? GO:0009765 ... Q05093 31182847
    6 6jo5:1 (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    7 6jo5:1 (2.9) BS07 CLA ? GO:0009765 ... Q05093 31182847
    8 6jo5:1 (2.9) BS08 CLA ? GO:0009765 ... Q05093 31182847
    9 6jo5:1 (2.9) BS09 CLA ? GO:0009765 ... Q05093 31182847
    10 6jo5:1 (2.9) BS10 CLA ? GO:0009765 ... Q05093 31182847
    11 6jo5:1 (2.9) BS11 CLA ? GO:0009765 ... Q05093 31182847
    12 6jo5:1 (2.9) BS12 CLA ? GO:0009765 ... Q05093 31182847
    13 6jo5:1 (2.9) BS13 CLA ? GO:0009765 ... Q05093 31182847
    14 6jo5:2 (2.9) BS01 CLA ? GO:0009416 ... A8IKC8 31182847
    15 6jo5:2 (2.9) BS02 CLA ? GO:0009416 ... A8IKC8 31182847
    16 6jo5:2 (2.9) BS03 CLA ? GO:0009416 ... A8IKC8 31182847
    17 6jo5:2 (2.9) BS04 CLA ? GO:0009416 ... A8IKC8 31182847
    18 6jo5:2 (2.9) BS05 CLA ? GO:0009416 ... A8IKC8 31182847
    19 6jo5:2 (2.9) BS06 CLA ? GO:0009416 ... A8IKC8 31182847
    20 6jo5:2 (2.9) BS07 CLA ? GO:0009416 ... A8IKC8 31182847
    21 6jo5:2 (2.9) BS08 CLA ? GO:0009416 ... A8IKC8 31182847
    22 6jo5:2 (2.9) BS09 CLA ? GO:0009416 ... A8IKC8 31182847
    23 6jo5:3 (2.9) BS01 CLA N/A GO:0009765 ... N/A 31182847
    24 6jo5:3 (2.9) BS02 CLA N/A GO:0009765 ... N/A 31182847
    25 6jo5:3 (2.9) BS03 CLA N/A GO:0009765 ... N/A 31182847
    26 6jo5:3 (2.9) BS04 CLA N/A GO:0009765 ... N/A 31182847
    27 6jo5:3 (2.9) BS05 CLA N/A GO:0009765 ... N/A 31182847
    28 6jo5:3 (2.9) BS06 CLA N/A GO:0009765 ... N/A 31182847
    29 6jo5:3 (2.9) BS07 CLA N/A GO:0009765 ... N/A 31182847
    30 6jo5:3 (2.9) BS08 CHL N/A GO:0009765 ... N/A 31182847
    31 6jo5:3 (2.9) BS09 CLA N/A GO:0009765 ... N/A 31182847
    32 6jo5:3 (2.9) BS10 CLA N/A GO:0009765 ... N/A 31182847
    33 6jo5:3 (2.9) BS11 CLA N/A GO:0009765 ... N/A 31182847
    34 6jo5:3 (2.9) BS12 CLA N/A GO:0009765 ... N/A 31182847
    35 6jo5:3 (2.9) BS13 CLA N/A GO:0009765 ... N/A 31182847
    36 6jo5:3 (2.9) BS14 CLA N/A GO:0009765 ... N/A 31182847
    37 6jo5:3 (2.9) BS15 CLA N/A GO:0009765 ... N/A 31182847
    38 6jo5:3 (2.9) BS16 CLA N/A GO:0009765 ... N/A 31182847
    39 6jo5:4 (2.9) BS01 CHL ? GO:0009765 ... Q75VZ0 31182847
    40 6jo5:4 (2.9) BS02 CLA ? GO:0009765 ... Q75VZ0 31182847
    41 6jo5:4 (2.9) BS03 CLA ? GO:0009765 ... Q75VZ0 31182847
    42 6jo5:4 (2.9) BS04 CLA ? GO:0009765 ... Q75VZ0 31182847
    43 6jo5:4 (2.9) BS05 CLA ? GO:0009765 ... Q75VZ0 31182847
    44 6jo5:4 (2.9) BS06 CHL ? GO:0009765 ... Q75VZ0 31182847
    45 6jo5:4 (2.9) BS07 CHL ? GO:0009765 ... Q75VZ0 31182847
    46 6jo5:4 (2.9) BS08 CHL ? GO:0009765 ... Q75VZ0 31182847
    47 6jo5:4 (2.9) BS09 CLA ? GO:0009765 ... Q75VZ0 31182847
    48 6jo5:4 (2.9) BS10 CLA ? GO:0009765 ... Q75VZ0 31182847
    49 6jo5:4 (2.9) BS11 CLA ? GO:0009765 ... Q75VZ0 31182847
    50 6jo5:4 (2.9) BS12 CLA ? GO:0009765 ... Q75VZ0 31182847
    51 6jo5:4 (2.9) BS13 CLA ? GO:0009765 ... Q75VZ0 31182847
    52 6jo5:4 (2.9) BS14 CLA ? GO:0009765 ... Q75VZ0 31182847
    53 6jo5:4 (2.9) BS15 CLA ? GO:0009765 ... Q75VZ0 31182847
    54 6jo5:4 (2.9) BS16 CHL ? GO:0009765 ... Q75VZ0 31182847
    55 6jo5:5 (2.9) BS01 CLA ? GO:0009765 ... Q75VY8 31182847
    56 6jo5:5 (2.9) BS02 CLA ? GO:0009765 ... Q75VY8 31182847
    57 6jo5:5 (2.9) BS03 CLA ? GO:0009765 ... Q75VY8 31182847
    58 6jo5:5 (2.9) BS04 CLA ? GO:0009765 ... Q75VY8 31182847
    59 6jo5:5 (2.9) BS05 CLA ? GO:0009765 ... Q75VY8 31182847
    60 6jo5:5 (2.9) BS06 CLA ? GO:0009765 ... Q75VY8 31182847
    61 6jo5:5 (2.9) BS07 CHL ? GO:0009765 ... Q75VY8 31182847
    62 6jo5:5 (2.9) BS08 CHL ? GO:0009765 ... Q75VY8 31182847
    63 6jo5:5 (2.9) BS09 CLA ? GO:0009765 ... Q75VY8 31182847
    64 6jo5:5 (2.9) BS10 CLA ? GO:0009765 ... Q75VY8 31182847
    65 6jo5:5 (2.9) BS11 CLA ? GO:0009765 ... Q75VY8 31182847
    66 6jo5:5 (2.9) BS12 CLA ? GO:0009765 ... Q75VY8 31182847
    67 6jo5:5 (2.9) BS13 CLA ? GO:0009765 ... Q75VY8 31182847
    68 6jo5:5 (2.9) BS14 CLA ? GO:0009765 ... Q75VY8 31182847
    69 6jo5:5 (2.9) BS15 CLA ? GO:0009765 ... Q75VY8 31182847
    70 6jo5:5 (2.9) BS16 CLA ? GO:0009765 ... Q75VY8 31182847
    71 6jo5:5 (2.9) BS17 CHL ? GO:0009765 ... Q75VY8 31182847
    72 6jo5:5 (2.9) BS18 CLA ? GO:0009765 ... Q75VY8 31182847
    73 6jo5:5 (2.9) BS19 CLA ? GO:0009765 ... Q75VY8 31182847
    74 6jo5:5 (2.9) BS20 CLA ? GO:0009765 ... Q75VY8 31182847
    75 6jo5:6 (2.9) BS01 CLA ? GO:0009416 ... Q75VY6 31182847
    76 6jo5:6 (2.9) BS02 CLA ? GO:0009416 ... Q75VY6 31182847
    77 6jo5:6 (2.9) BS03 CLA ? GO:0009416 ... Q75VY6 31182847
    78 6jo5:6 (2.9) BS04 CLA ? GO:0009416 ... Q75VY6 31182847
    79 6jo5:6 (2.9) BS05 CLA ? GO:0009416 ... Q75VY6 31182847
    80 6jo5:6 (2.9) BS06 CLA ? GO:0009416 ... Q75VY6 31182847
    81 6jo5:6 (2.9) BS07 CLA ? GO:0009416 ... Q75VY6 31182847
    82 6jo5:6 (2.9) BS08 CHL ? GO:0009416 ... Q75VY6 31182847
    83 6jo5:6 (2.9) BS09 CHL ? GO:0009416 ... Q75VY6 31182847
    84 6jo5:6 (2.9) BS10 CHL ? GO:0009416 ... Q75VY6 31182847
    85 6jo5:6 (2.9) BS11 CLA ? GO:0009416 ... Q75VY6 31182847
    86 6jo5:6 (2.9) BS12 CLA ? GO:0009416 ... Q75VY6 31182847
    87 6jo5:6 (2.9) BS13 CLA ? GO:0009416 ... Q75VY6 31182847
    88 6jo5:6 (2.9) BS14 CLA ? GO:0009416 ... Q75VY6 31182847
    89 6jo5:6 (2.9) BS15 CLA ? GO:0009416 ... Q75VY6 31182847
    90 6jo5:6 (2.9) BS16 CLA ? GO:0009416 ... Q75VY6 31182847
    91 6jo5:6 (2.9) BS17 CLA ? GO:0009416 ... Q75VY6 31182847
    92 6jo5:6 (2.9) BS18 CLA ? GO:0009416 ... Q75VY6 31182847
    93 6jo5:6 (2.9) BS19 CHL ? GO:0009416 ... Q75VY6 31182847
    94 6jo5:6 (2.9) BS20 CLA ? GO:0009416 ... Q75VY6 31182847
    95 6jo5:7 (2.9) BS01 CLA ? GO:0009765 ... Q84Y02 31182847
    96 6jo5:7 (2.9) BS02 CLA ? GO:0009765 ... Q84Y02 31182847
    97 6jo5:7 (2.9) BS03 CLA ? GO:0009765 ... Q84Y02 31182847
    98 6jo5:7 (2.9) BS04 CLA ? GO:0009765 ... Q84Y02 31182847
    99 6jo5:7 (2.9) BS05 CLA ? GO:0009765 ... Q84Y02 31182847
    100 6jo5:7 (2.9) BS06 CHL ? GO:0009765 ... Q84Y02 31182847
    101 6jo5:7 (2.9) BS07 CLA ? GO:0009765 ... Q84Y02 31182847
    102 6jo5:7 (2.9) BS08 CLA ? GO:0009765 ... Q84Y02 31182847
    103 6jo5:7 (2.9) BS09 CLA ? GO:0009765 ... Q84Y02 31182847
    104 6jo5:7 (2.9) BS10 CLA ? GO:0009765 ... Q84Y02 31182847
    105 6jo5:7 (2.9) BS11 CLA ? GO:0009765 ... Q84Y02 31182847
    106 6jo5:7 (2.9) BS12 CLA ? GO:0009765 ... Q84Y02 31182847
    107 6jo5:7 (2.9) BS13 CLA ? GO:0009765 ... Q84Y02 31182847
    108 6jo5:7 (2.9) BS14 CLA ? GO:0009765 ... Q84Y02 31182847
    109 6jo5:7 (2.9) BS15 CLA ? GO:0009765 ... Q84Y02 31182847
    110 6jo5:7 (2.9) BS16 CLA ? GO:0009765 ... Q84Y02 31182847
    111 6jo5:7 (2.9) BS17 CLA ? GO:0009765 ... Q84Y02 31182847
    112 6jo5:8 (2.9) BS01 CHL ? GO:0009765 ... Q75VY7 31182847
    113 6jo5:8 (2.9) BS02 CLA ? GO:0009765 ... Q75VY7 31182847
    114 6jo5:8 (2.9) BS03 CLA ? GO:0009765 ... Q75VY7 31182847
    115 6jo5:8 (2.9) BS04 CLA ? GO:0009765 ... Q75VY7 31182847
    116 6jo5:8 (2.9) BS05 CLA ? GO:0009765 ... Q75VY7 31182847
    117 6jo5:8 (2.9) BS06 CHL ? GO:0009765 ... Q75VY7 31182847
    118 6jo5:8 (2.9) BS07 CLA ? GO:0009765 ... Q75VY7 31182847
    119 6jo5:8 (2.9) BS08 CLA ? GO:0009765 ... Q75VY7 31182847
    120 6jo5:8 (2.9) BS09 CLA ? GO:0009765 ... Q75VY7 31182847
    121 6jo5:8 (2.9) BS10 CLA ? GO:0009765 ... Q75VY7 31182847
    122 6jo5:8 (2.9) BS11 CLA ? GO:0009765 ... Q75VY7 31182847
    123 6jo5:8 (2.9) BS12 CLA ? GO:0009765 ... Q75VY7 31182847
    124 6jo5:8 (2.9) BS13 CLA ? GO:0009765 ... Q75VY7 31182847
    125 6jo5:8 (2.9) BS14 CLA ? GO:0009765 ... Q75VY7 31182847
    126 6jo5:8 (2.9) BS15 CLA ? GO:0009765 ... Q75VY7 31182847
    127 6jo5:9 (2.9) BS01 CLA ? GO:0009765 ... A8ITV3 31182847
    128 6jo5:9 (2.9) BS02 CLA ? GO:0009765 ... A8ITV3 31182847
    129 6jo5:9 (2.9) BS03 CLA ? GO:0009765 ... A8ITV3 31182847
    130 6jo5:9 (2.9) BS04 CLA ? GO:0009765 ... A8ITV3 31182847
    131 6jo5:9 (2.9) BS05 CLA ? GO:0009765 ... A8ITV3 31182847
    132 6jo5:9 (2.9) BS06 CHL ? GO:0009765 ... A8ITV3 31182847
    133 6jo5:9 (2.9) BS07 CHL ? GO:0009765 ... A8ITV3 31182847
    134 6jo5:9 (2.9) BS08 CLA ? GO:0009765 ... A8ITV3 31182847
    135 6jo5:9 (2.9) BS09 CLA ? GO:0009765 ... A8ITV3 31182847
    136 6jo5:9 (2.9) BS10 CLA ? GO:0009765 ... A8ITV3 31182847
    137 6jo5:9 (2.9) BS11 CLA ? GO:0009765 ... A8ITV3 31182847
    138 6jo5:9 (2.9) BS12 CLA ? GO:0009765 ... A8ITV3 31182847
    139 6jo5:A (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P12154 31182847
    140 6jo5:A (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    141 6jo5:A (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    142 6jo5:A (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    143 6jo5:A (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    144 6jo5:A (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    145 6jo5:A (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    146 6jo5:A (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    147 6jo5:A (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    148 6jo5:A (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    149 6jo5:A (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    150 6jo5:A (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    151 6jo5:A (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    152 6jo5:A (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    153 6jo5:A (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    154 6jo5:A (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    155 6jo5:A (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    156 6jo5:A (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    157 6jo5:A (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    158 6jo5:A (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    159 6jo5:A (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    160 6jo5:A (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    161 6jo5:A (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    162 6jo5:A (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    163 6jo5:A (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    164 6jo5:A (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    165 6jo5:A (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    166 6jo5:A (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    167 6jo5:A (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    168 6jo5:A (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    169 6jo5:A (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    170 6jo5:A (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    171 6jo5:A (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    172 6jo5:A (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    173 6jo5:A (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    174 6jo5:A (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    175 6jo5:A (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    176 6jo5:A (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    177 6jo5:A (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    178 6jo5:A (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    179 6jo5:A (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    180 6jo5:A (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    181 6jo5:A (2.9) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    182 6jo5:A (2.9) BS44 PQN 1.97.1.12 GO:0000287 ... P12154 31182847
    183 6jo5:A (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    184 6jo5:A (2.9) BS46 SF4 1.97.1.12 GO:0000287 ... P12154 31182847
    185 6jo5:A (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    186 6jo5:A (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    187 6jo5:A (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    188 6jo5:A (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    189 6jo5:A (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 31182847
    190 6jo5:B (2.9) BS01 CL0 1.97.1.12 GO:0000287 ... P09144 31182847
    191 6jo5:B (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    192 6jo5:B (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    193 6jo5:B (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    194 6jo5:B (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    195 6jo5:B (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    196 6jo5:B (2.9) BS07 SF4 1.97.1.12 GO:0000287 ... P09144 31182847
    197 6jo5:B (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    198 6jo5:B (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    199 6jo5:B (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 31182847
    200 6jo5:B (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 31182847

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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