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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 6g5i:A (3.5) BS01 rna ? GO:0000028 ... P08865 29875412
    2 6g5i:B (3.5) BS01 rna ? GO:0002181 ... P61247 29875412
    3 6g5i:C (3.5) BS01 rna ? GO:0002181 ... P15880 29875412
    4 6g5i:D (3.5) BS01 rna 4.2.99.18 GO:0000977 ... P23396 29875412
    5 6g5i:E (3.5) BS01 rna ? GO:0002181 ... P62701 29875412
    6 6g5i:F (3.5) BS01 rna ? GO:0000028 ... P46782 29875412
    7 6g5i:G (3.5) BS01 rna ? GO:0000082 ... P62753 29875412
    8 6g5i:H (3.5) BS01 rna ? GO:0001843 ... P62081 29875412
    9 6g5i:I (3.5) BS01 rna ? GO:0000462 ... P62241 29875412
    10 6g5i:J (3.5) BS01 rna ? GO:0002181 ... P46781 29875412
    11 6g5i:K (3.5) BS01 rna ? GO:0002181 ... P46783 29875412
    12 6g5i:L (3.5) BS01 rna ? GO:0002181 ... P62280 29875412
    13 6g5i:M (3.5) BS01 rna ? GO:0002181 ... P25398 29875412
    14 6g5i:N (3.5) BS01 rna ? GO:0002181 ... P62277 29875412
    15 6g5i:O (3.5) BS01 rna ? GO:0000028 ... P62263 29875412
    16 6g5i:P (3.5) BS01 rna ? GO:0000028 ... P62841 29875412
    17 6g5i:Q (3.5) BS01 rna ? GO:0000462 ... P62249 29875412
    18 6g5i:R (3.5) BS01 rna ? GO:0002181 ... P08708 29875412
    19 6g5i:S (3.5) BS01 rna ? GO:0002181 ... P62269 29875412
    20 6g5i:T (3.5) BS01 rna ? GO:0000028 ... P39019 29875412
    21 6g5i:U (3.5) BS01 rna ? GO:0002181 ... P60866 29875412
    22 6g5i:W (3.5) BS01 rna ? GO:0002181 ... P62244 29875412
    23 6g5i:X (3.5) BS01 rna ? GO:0002181 ... P62266 29875412
    24 6g5i:Y (3.5) BS01 rna ? GO:0002181 ... P62847 29875412
    25 6g5i:Z (3.5) BS01 rna ? GO:0002181 ... P62851 29875412
    26 6g5i:b (3.5) BS01 rna ? GO:0000028 ... P42677 29875412
    27 6g5i:c (3.5) BS01 rna ? GO:0000028 ... P62857 29875412
    28 6g5i:d (3.5) BS01 rna ? GO:0002181 ... P62273 29875412
    29 6g5i:d (3.5) BS02 ZN ? GO:0002181 ... P62273 29875412
    30 6g5i:e (3.5) BS01 rna ? GO:0003735 ... P62861 29875412
    31 6g5i:f (3.5) BS01 rna ? GO:0002181 ... P62979 29875412
    32 6g5i:f (3.5) BS02 ZN ? GO:0002181 ... P62979 29875412
    33 6g5i:g (3.5) BS01 rna ? GO:0001891 ... P63244 29875412
    34 6g5i:x (3.5) BS01 rna ? GO:0003676 ... Q9NRX1 29875412
    35 6g5i:y (3.5) BS01 rna 3.1.-.- GO:0004519 ... Q9ULX3 29875412
    36 6g5i:y (3.5) BS02 ZN 3.1.-.- GO:0004519 ... Q9ULX3 29875412
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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