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BioLiP
Download all results in tab-seperated text for 70 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5uyp:03 (3.9) BS01 rna ? GO:0000027 ... P0A7L0 28538735
    2 5uyp:03 (3.9) BS02 rna ? GO:0000027 ... P0A7L0 28538735
    3 5uyp:04 (3.9) BS01 rna ? GO:0000027 ... P60422 28538735
    4 5uyp:04 (3.9) BS02 rna ? GO:0000027 ... P60422 28538735
    5 5uyp:05 (3.9) BS01 rna ? GO:0000027 ... P60438 28538735
    6 5uyp:06 (3.9) BS01 rna ? GO:0001070 ... P60723 28538735
    7 5uyp:07 (3.9) BS01 rna ? GO:0000027 ... P62399 28538735
    8 5uyp:07 (3.9) BS02 rna ? GO:0000027 ... P62399 28538735
    9 5uyp:07 (3.9) BS03 rna ? GO:0000027 ... P62399 28538735
    10 5uyp:08 (3.9) BS01 rna ? GO:0000027 ... P0AG55 28538735
    11 5uyp:09 (3.9) BS01 rna ? GO:0002181 ... P0A7R1 28538735
    12 5uyp:10 (3.9) BS01 rna ? GO:0003735 ... P0A7J3 28538735
    13 5uyp:11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 28538735
    14 5uyp:12 (3.9) BS01 rna ? GO:0002181 ... P0AA10 28538735
    15 5uyp:13 (3.9) BS01 rna ? GO:0002181 ... P0ADY3 28538735
    16 5uyp:13 (3.9) BS02 rna ? GO:0002181 ... P0ADY3 28538735
    17 5uyp:14 (3.9) BS01 rna ? GO:0002181 ... P02413 28538735
    18 5uyp:15 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 28538735
    19 5uyp:15 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 28538735
    20 5uyp:16 (3.9) BS01 rna ? GO:0000027 ... P0AG44 28538735
    21 5uyp:17 (3.9) BS01 rna ? GO:0002181 ... P0C018 28538735
    22 5uyp:17 (3.9) BS02 rna ? GO:0002181 ... P0C018 28538735
    23 5uyp:18 (3.9) BS01 rna ? GO:0000027 ... P0A7K6 28538735
    24 5uyp:18 (3.9) BS02 rna ? GO:0000027 ... P0A7K6 28538735
    25 5uyp:19 (3.9) BS01 rna ? GO:0000027 ... P0A7L3 28538735
    26 5uyp:20 (3.9) BS01 rna ? GO:0002181 ... P0AG48 28538735
    27 5uyp:21 (3.9) BS01 rna ? GO:0002181 ... P61175 28538735
    28 5uyp:22 (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 28538735
    29 5uyp:23 (3.9) BS01 rna ? GO:0000027 ... P60624 28538735
    30 5uyp:24 (3.9) BS01 rna ? GO:0000027 ... P68919 28538735
    31 5uyp:24 (3.9) BS02 rna ? GO:0000027 ... P68919 28538735
    32 5uyp:25 (3.9) BS01 rna ? GO:0003735 ... P0A7L8 28538735
    33 5uyp:25 (3.9) BS02 rna ? GO:0003735 ... P0A7L8 28538735
    34 5uyp:26 (3.9) BS01 rna ? GO:0000027 ... P0A7M2 28538735
    35 5uyp:27 (3.9) BS01 rna ? GO:0000027 ... P0A7M6 28538735
    36 5uyp:28 (3.9) BS01 rna ? GO:0000027 ... P0AG51 28538735
    37 5uyp:28 (3.9) BS02 rna ? GO:0000027 ... P0AG51 28538735
    38 5uyp:29 (3.9) BS01 rna ? GO:0002181 ... P0A7M9 28538735
    39 5uyp:30 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 28538735
    40 5uyp:31 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 28538735
    41 5uyp:32 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 28538735
    42 5uyp:33 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 28538735
    43 5uyp:34 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 28538735
    44 5uyp:B (3.9) BS01 rna ? GO:0000028 ... P0A7V0 28538735
    45 5uyp:C (3.9) BS01 rna ? GO:0003676 ... P0A7V3 28538735
    46 5uyp:D (3.9) BS01 rna ? GO:0000028 ... P0A7V8 28538735
    47 5uyp:E (3.9) BS01 rna ? GO:0000028 ... P0A7W1 28538735
    48 5uyp:F (3.9) BS01 rna ? GO:0003735 ... P02358 28538735
    49 5uyp:G (3.9) BS01 rna ? GO:0003723 ... P02359 28538735
    50 5uyp:G (3.9) BS02 rna ? GO:0003723 ... P02359 28538735
    51 5uyp:H (3.9) BS01 rna ? GO:0000028 ... P0A7W7 28538735
    52 5uyp:I (3.9) BS01 rna ? GO:0000049 ... P0A7X3 28538735
    53 5uyp:I (3.9) BS02 rna ? GO:0000049 ... P0A7X3 28538735
    54 5uyp:J (3.9) BS01 rna ? GO:0000049 ... P0A7R5 28538735
    55 5uyp:K (3.9) BS01 rna ? GO:0002181 ... P0A7R9 28538735
    56 5uyp:L (3.9) BS01 rna ? GO:0000049 ... P0A7S3 28538735
    57 5uyp:M (3.9) BS01 rna ? GO:0000049 ... P0A7S9 28538735
    58 5uyp:M (3.9) BS02 rna ? GO:0000049 ... P0A7S9 28538735
    59 5uyp:N (3.9) BS01 rna ? GO:0000028 ... P0AG59 28538735
    60 5uyp:O (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 28538735
    61 5uyp:O (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 28538735
    62 5uyp:P (3.9) BS01 rna ? GO:0000028 ... P0A7T3 28538735
    63 5uyp:Q (3.9) BS01 rna ? GO:0000028 ... P0AG63 28538735
    64 5uyp:R (3.9) BS01 rna ? GO:0003735 ... P0A7T7 28538735
    65 5uyp:S (3.9) BS01 rna ? GO:0003723 ... P0A7U3 28538735
    66 5uyp:T (3.9) BS01 rna ? GO:0000028 ... P0A7U7 28538735
    67 5uyp:U (3.9) BS01 rna ? GO:0000028 ... P68679 28538735
    68 5uyp:Z (3.9) BS01 rna ? GO:0003723 ... P0CE47 28538735
    69 5uyp:Z (3.9) BS02 rna ? GO:0003723 ... P0CE47 28538735
    70 5uyp:Z (3.9) BS03 LYS ? GO:0003723 ... P0CE47 28538735
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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