Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v9e:AA (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    2 4v9e:AB (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    3 4v9e:AC (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    4 4v9e:AD (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    5 4v9e:AE (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    6 4v9e:AF (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    7 4v9e:AG (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    8 4v9e:AH (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    9 4v9e:AI (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    10 4v9e:AJ (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    11 4v9e:AK (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    12 4v9e:AL (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    13 4v9e:AM (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    14 4v9e:AN (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    15 4v9e:AO (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    16 4v9e:AP (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    17 4v9e:AQ (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    18 4v9e:AR (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    19 4v9e:BA (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    20 4v9e:BB (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    21 4v9e:BC (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    22 4v9e:BD (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    23 4v9e:BE (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    24 4v9e:BF (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    25 4v9e:BG (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    26 4v9e:BH (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    27 4v9e:BI (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    28 4v9e:BJ (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    29 4v9e:BK (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    30 4v9e:BL (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    31 4v9e:BM (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    32 4v9e:BN (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    33 4v9e:BO (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    34 4v9e:BP (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    35 4v9e:BQ (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    36 4v9e:BR (3.4) BS01 rna ? GO:0003723 ... D3K5I7 23129612
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218