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BioLiP
Download all results in tab-seperated text for 45 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v81:A (3.8) BS01 ADP ? GO:0005515 ... P12612 21701561
    2 4v81:A (3.8) BS02 BEF ? GO:0005515 ... P12612 21701561
    3 4v81:B (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    4 4v81:B (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    5 4v81:C (3.8) BS01 ADP ? GO:0005524 ... P39077 21701561
    6 4v81:C (3.8) BS02 BEF ? GO:0005524 ... P39077 21701561
    7 4v81:D (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    8 4v81:D (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    9 4v81:E (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    10 4v81:F (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    11 4v81:F (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    12 4v81:G (3.8) BS01 ADP ? GO:0005524 ... P42943 21701561
    13 4v81:H (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    14 4v81:H (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    15 4v81:J (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    16 4v81:J (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    17 4v81:L (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    18 4v81:L (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    19 4v81:M (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    20 4v81:M (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    21 4v81:N (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    22 4v81:N (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    23 4v81:P (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    24 4v81:P (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    25 4v81:a (3.8) BS01 ADP ? GO:0005515 ... P12612 21701561
    26 4v81:a (3.8) BS02 BEF ? GO:0005515 ... P12612 21701561
    27 4v81:b (3.8) BS01 ADP ? GO:0005515 ... P39076 21701561
    28 4v81:b (3.8) BS02 BEF ? GO:0005515 ... P39076 21701561
    29 4v81:e (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    30 4v81:e (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    31 4v81:f (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    32 4v81:f (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    33 4v81:g (3.8) BS01 ADP ? GO:0005524 ... P42943 21701561
    34 4v81:h (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    35 4v81:h (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    36 4v81:k (3.8) BS01 ADP ? GO:0005524 ... P39077 21701561
    37 4v81:k (3.8) BS02 BEF ? GO:0005524 ... P39077 21701561
    38 4v81:l (3.8) BS01 ADP ? GO:0005524 ... P39078 21701561
    39 4v81:l (3.8) BS02 BEF ? GO:0005524 ... P39078 21701561
    40 4v81:m (3.8) BS01 ADP ? GO:0005524 ... P40413 21701561
    41 4v81:m (3.8) BS02 BEF ? GO:0005524 ... P40413 21701561
    42 4v81:n (3.8) BS01 ADP ? GO:0005524 ... P39079 21701561
    43 4v81:n (3.8) BS02 BEF ? GO:0005524 ... P39079 21701561
    44 4v81:p (3.8) BS01 ADP ? GO:0005524 ... P47079 21701561
    45 4v81:p (3.8) BS02 BEF ? GO:0005524 ... P47079 21701561
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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