Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 67 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4v7b:AB (6.8) BS01 rna ? GO:0000028 ... P0A7V0 24324168
    2 4v7b:AC (6.8) BS01 rna ? GO:0000028 ... P0A7V3 24324168
    3 4v7b:AD (6.8) BS01 rna ? GO:0000028 ... P0A7V8 24324168
    4 4v7b:AE (6.8) BS01 rna ? GO:0000028 ... P0A7W1 24324168
    5 4v7b:AE (6.8) BS02 rna ? GO:0000028 ... P0A7W1 24324168
    6 4v7b:AF (6.8) BS01 rna ? GO:0002181 ... P02358 24324168
    7 4v7b:AG (6.8) BS01 rna ? GO:0000028 ... P02359 24324168
    8 4v7b:AH (6.8) BS01 rna ? GO:0000028 ... P0A7W7 24324168
    9 4v7b:AI (6.8) BS01 rna ? GO:0000049 ... P0A7X3 24324168
    10 4v7b:AI (6.8) BS02 rna ? GO:0000049 ... P0A7X3 24324168
    11 4v7b:AJ (6.8) BS01 rna ? GO:0000049 ... P0A7R5 24324168
    12 4v7b:AK (6.8) BS01 rna ? GO:0002181 ... P0A7R9 24324168
    13 4v7b:AL (6.8) BS01 rna ? GO:0000049 ... P0A7S3 24324168
    14 4v7b:AM (6.8) BS01 rna ? GO:0000049 ... P0A7S9 24324168
    15 4v7b:AN (6.8) BS01 rna ? GO:0000028 ... P0AG59 24324168
    16 4v7b:AO (6.8) BS01 rna ? GO:0000028 ... P0ADZ4 24324168
    17 4v7b:AP (6.8) BS01 rna ? GO:0000028 ... P0A7T3 24324168
    18 4v7b:AQ (6.8) BS01 rna ? GO:0000028 ... P0AG63 24324168
    19 4v7b:AR (6.8) BS01 rna ? GO:0002181 ... P0A7T7 24324168
    20 4v7b:AS (6.8) BS01 rna ? GO:0000028 ... P0A7U3 24324168
    21 4v7b:AT (6.8) BS01 rna ? GO:0000028 ... P0A7U7 24324168
    22 4v7b:AU (6.8) BS01 rna ? GO:0000028 ... P68679 24324168
    23 4v7b:AU (6.8) BS02 rna ? GO:0000028 ... P68679 24324168
    24 4v7b:AY (6.8) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    25 4v7b:AY (6.8) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    26 4v7b:AY (6.8) BS03 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    27 4v7b:AY (6.8) BS04 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    28 4v7b:AY (6.8) BS05 FUA 3.6.5.- GO:0003746 ... P0A6M8 24324168
    29 4v7b:AY (6.8) BS06 GDP 3.6.5.- GO:0003746 ... P0A6M8 24324168
    30 4v7b:B0 (6.8) BS01 rna ? GO:0000027 ... P0A7N4 24324168
    31 4v7b:B1 (6.8) BS01 rna ? GO:0000027 ... P0A7N9 24324168
    32 4v7b:B2 (6.8) BS01 rna ? GO:0002181 ... P0A7P5 24324168
    33 4v7b:B3 (6.8) BS01 rna ? GO:0002181 ... P0A7Q1 24324168
    34 4v7b:B4 (6.8) BS01 rna ? GO:0002181 ... P0A7Q6 24324168
    35 4v7b:B5 (6.8) BS01 rna ? GO:0002181 ... P0A7J3 24324168
    36 4v7b:BC (6.8) BS01 rna ? GO:0000027 ... P60422 24324168
    37 4v7b:BD (6.8) BS01 rna ? GO:0000027 ... P60438 24324168
    38 4v7b:BE (6.8) BS01 rna ? GO:0001070 ... P60723 24324168
    39 4v7b:BF (6.8) BS01 rna ? GO:0000027 ... P62399 24324168
    40 4v7b:BF (6.8) BS02 rna ? GO:0000027 ... P62399 24324168
    41 4v7b:BF (6.8) BS03 rna ? GO:0000027 ... P62399 24324168
    42 4v7b:BG (6.8) BS01 rna ? GO:0000027 ... P0AG55 24324168
    43 4v7b:BH (6.8) BS01 rna ? GO:0003735 ... P0A7R1 24324168
    44 4v7b:BI (6.8) BS01 rna ? GO:0000027 ... P0A7J7 24324168
    45 4v7b:BJ (6.8) BS01 rna ? GO:0002181 ... P0AA10 24324168
    46 4v7b:BK (6.8) BS01 rna ? GO:0002181 ... P0ADY3 24324168
    47 4v7b:BK (6.8) BS02 rna ? GO:0002181 ... P0ADY3 24324168
    48 4v7b:BL (6.8) BS01 rna ? GO:0002181 ... P02413 24324168
    49 4v7b:BM (6.8) BS01 rna ? GO:0000027 ... P0ADY7 24324168
    50 4v7b:BM (6.8) BS02 rna ? GO:0000027 ... P0ADY7 24324168
    51 4v7b:BN (6.8) BS01 rna ? GO:0000027 ... P0AG44 24324168
    52 4v7b:BO (6.8) BS01 rna ? GO:0002181 ... P0C018 24324168
    53 4v7b:BO (6.8) BS02 rna ? GO:0002181 ... P0C018 24324168
    54 4v7b:BP (6.8) BS01 rna ? GO:0000027 ... P0A7K6 24324168
    55 4v7b:BP (6.8) BS02 rna ? GO:0000027 ... P0A7K6 24324168
    56 4v7b:BQ (6.8) BS01 rna ? GO:0000027 ... P0A7L3 24324168
    57 4v7b:BR (6.8) BS01 rna ? GO:0002181 ... P0AG48 24324168
    58 4v7b:BS (6.8) BS01 rna ? GO:0002181 ... P61175 24324168
    59 4v7b:BT (6.8) BS01 rna ? GO:0000027 ... P0ADZ0 24324168
    60 4v7b:BU (6.8) BS01 rna ? GO:0000027 ... P60624 24324168
    61 4v7b:BV (6.8) BS01 rna ? GO:0000027 ... P68919 24324168
    62 4v7b:BV (6.8) BS02 rna ? GO:0000027 ... P68919 24324168
    63 4v7b:BW (6.8) BS01 rna ? GO:0000027 ... P0A7L8 24324168
    64 4v7b:BX (6.8) BS01 rna ? GO:0000027 ... P0A7M2 24324168
    65 4v7b:BY (6.8) BS01 rna ? GO:0000027 ... P0A7M6 24324168
    66 4v7b:BZ (6.8) BS01 rna ? GO:0000027 ... P0AG51 24324168
    67 4v7b:BZ (6.8) BS02 rna ? GO:0000027 ... P0AG51 24324168
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218