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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jce:0 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 26809121
    2 3jce:1 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 26809121
    3 3jce:2 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 26809121
    4 3jce:3 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 26809121
    5 3jce:4 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 26809121
    6 3jce:5 (3.2) BS01 rna ? GO:0000027 ... P0A7L0 26809121
    7 3jce:5 (3.2) BS02 rna ? GO:0000027 ... P0A7L0 26809121
    8 3jce:C (3.2) BS01 rna ? GO:0000027 ... P60422 26809121
    9 3jce:C (3.2) BS02 rna ? GO:0000027 ... P60422 26809121
    10 3jce:D (3.2) BS01 rna ? GO:0000027 ... P60438 26809121
    11 3jce:E (3.2) BS01 rna ? GO:0001070 ... P60723 26809121
    12 3jce:F (3.2) BS01 rna ? GO:0000027 ... P62399 26809121
    13 3jce:F (3.2) BS02 rna ? GO:0000027 ... P62399 26809121
    14 3jce:F (3.2) BS03 rna ? GO:0000027 ... P62399 26809121
    15 3jce:G (3.2) BS01 rna ? GO:0000027 ... P0AG55 26809121
    16 3jce:H (3.2) BS01 rna ? GO:0002181 ... P0A7R1 26809121
    17 3jce:I (3.2) BS01 rna ? GO:0000027 ... P0A7J7 26809121
    18 3jce:J (3.2) BS01 rna ? GO:0002181 ... P0AA10 26809121
    19 3jce:K (3.2) BS01 rna ? GO:0002181 ... P0ADY3 26809121
    20 3jce:K (3.2) BS02 rna ? GO:0002181 ... P0ADY3 26809121
    21 3jce:L (3.2) BS01 rna ? GO:0002181 ... P02413 26809121
    22 3jce:M (3.2) BS01 rna ? GO:0000027 ... P0ADY7 26809121
    23 3jce:M (3.2) BS02 rna ? GO:0000027 ... P0ADY7 26809121
    24 3jce:M (3.2) BS03 rna ? GO:0000027 ... P0ADY7 26809121
    25 3jce:N (3.2) BS01 rna ? GO:0000027 ... P0AG44 26809121
    26 3jce:O (3.2) BS01 rna ? GO:0002181 ... P0C018 26809121
    27 3jce:O (3.2) BS02 rna ? GO:0002181 ... P0C018 26809121
    28 3jce:P (3.2) BS01 rna ? GO:0000027 ... P0A7K6 26809121
    29 3jce:P (3.2) BS02 rna ? GO:0000027 ... P0A7K6 26809121
    30 3jce:Q (3.2) BS01 rna ? GO:0000027 ... P0A7L3 26809121
    31 3jce:R (3.2) BS01 rna ? GO:0002181 ... P0AG48 26809121
    32 3jce:S (3.2) BS01 rna ? GO:0002181 ... P61175 26809121
    33 3jce:T (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 26809121
    34 3jce:U (3.2) BS01 rna ? GO:0000027 ... P60624 26809121
    35 3jce:V (3.2) BS01 rna ? GO:0000027 ... P68919 26809121
    36 3jce:W (3.2) BS01 rna ? GO:0000027 ... P0A7L8 26809121
    37 3jce:X (3.2) BS01 rna ? GO:0000027 ... P0A7M2 26809121
    38 3jce:Y (3.2) BS01 rna ? GO:0000027 ... P0A7M6 26809121
    39 3jce:Z (3.2) BS01 rna ? GO:0000027 ... P0AG51 26809121
    40 3jce:b (3.2) BS01 rna ? GO:0000028 ... P0A7V0 26809121
    41 3jce:c (3.2) BS01 rna ? GO:0000028 ... P0A7V3 26809121
    42 3jce:c (3.2) BS02 rna ? GO:0000028 ... P0A7V3 26809121
    43 3jce:d (3.2) BS01 rna ? GO:0000028 ... P0A7V8 26809121
    44 3jce:e (3.2) BS01 rna ? GO:0000028 ... P0A7W1 26809121
    45 3jce:e (3.2) BS02 rna ? GO:0000028 ... P0A7W1 26809121
    46 3jce:f (3.2) BS01 rna ? GO:0002181 ... P02358 26809121
    47 3jce:g (3.2) BS01 rna ? GO:0000028 ... P02359 26809121
    48 3jce:g (3.2) BS02 rna ? GO:0000028 ... P02359 26809121
    49 3jce:h (3.2) BS01 rna ? GO:0000028 ... P0A7W7 26809121
    50 3jce:i (3.2) BS01 rna ? GO:0000049 ... P0A7X3 26809121
    51 3jce:i (3.2) BS02 rna ? GO:0000049 ... P0A7X3 26809121
    52 3jce:j (3.2) BS01 rna ? GO:0000049 ... P0A7R5 26809121
    53 3jce:k (3.2) BS01 rna ? GO:0002181 ... P0A7R9 26809121
    54 3jce:l (3.2) BS01 rna ? GO:0000049 ... P0A7S3 26809121
    55 3jce:m (3.2) BS01 rna ? GO:0000049 ... P0A7S9 26809121
    56 3jce:m (3.2) BS02 rna ? GO:0000049 ... P0A7S9 26809121
    57 3jce:n (3.2) BS01 rna ? GO:0000028 ... P0AG59 26809121
    58 3jce:o (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 26809121
    59 3jce:o (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 26809121
    60 3jce:p (3.2) BS01 rna ? GO:0000028 ... P0A7T3 26809121
    61 3jce:q (3.2) BS01 rna ? GO:0000028 ... P0AG63 26809121
    62 3jce:r (3.2) BS01 rna ? GO:0002181 ... P0A7T7 26809121
    63 3jce:s (3.2) BS01 rna ? GO:0000028 ... P0A7U3 26809121
    64 3jce:t (3.2) BS01 rna ? GO:0000028 ... P0A7U7 26809121
    65 3jce:u (3.2) BS01 rna ? GO:0000028 ... P68679 26809121
    66 3jce:x (3.2) BS01 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    67 3jce:x (3.2) BS02 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    68 3jce:x (3.2) BS03 rna 3.6.5.n1 GO:0003746 ... P60785 26809121
    69 3jce:x (3.2) BS04 GNP 3.6.5.n1 GO:0003746 ... P60785 26809121
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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