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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17801 1m17:A (2.6) BS01 AQ4 2.7.10.1 GO:0004672 ... P00533 12196540 BindingDB: IC50=30nM, Ki=0.100000nM, Kd=0.520000nM
    17802 1m1b:A (2.25) BS02 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    17803 1m1b:B (2.25) BS01 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    17804 1m1n:A (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    17805 1m1n:A (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    17806 1m1n:B (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    17807 1m1n:C (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    17808 1m1n:C (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    17809 1m1n:D (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    17810 1m1n:E (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    17811 1m1n:E (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    17812 1m1n:F (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    17813 1m1n:G (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    17814 1m1n:G (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    17815 1m1n:H (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    17816 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    17817 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    17818 1m1p:A (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17819 1m1p:A (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17820 1m1p:A (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17821 1m1p:A (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17822 1m1p:B (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17823 1m1p:B (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17824 1m1p:B (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17825 1m1p:B (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17826 1m1p:C (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17827 1m1p:C (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17828 1m1p:C (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17829 1m1p:C (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17830 1m1p:D (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17831 1m1p:D (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17832 1m1p:D (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17833 1m1p:D (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17834 1m1p:E (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17835 1m1p:E (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17836 1m1p:E (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17837 1m1p:E (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17838 1m1p:E (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    17839 1m1p:F (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17840 1m1p:F (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17841 1m1p:F (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17842 1m1p:F (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17843 1m1p:F (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    17844 1m1q:A (0.97) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17845 1m1q:A (0.97) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17846 1m1q:A (0.97) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17847 1m1q:A (0.97) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17848 1m1r:A (1.02) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    17849 1m1r:A (1.02) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    17850 1m1r:A (1.02) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    17851 1m1r:A (1.02) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    17852 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17853 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17854 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17855 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17856 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17857 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17858 1m1y:E (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17859 1m1y:F (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17860 1m1y:G (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17861 1m1y:H (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17862 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17863 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17864 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17865 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17866 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17867 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17868 1m1y:M (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17869 1m1y:N (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17870 1m1y:O (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17871 1m1y:P (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17872 1m20:A (1.8) BS01 HEM ? GO:0020037 ... P00171 12199707
    17873 1m2a:A (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    17874 1m2a:B (1.5) BS01 FES ? GO:0046872 ... O66511 12089152
    17875 1m2b:A (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    17876 1m2b:B (1.25) BS01 FES ? GO:0046872 ... O66511 12089152
    17877 1m2d:A (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    17878 1m2d:B (1.05) BS01 FES ? GO:0046872 ... O66511 12089152
    17879 1m2g:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    17880 1m2h:A (1.8) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    17881 1m2i:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    17882 1m2j:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    17883 1m2k:A (1.47) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    17884 1m2m:A (1.8) BS01 HEM ? GO:0020037 ... P00171 N/A
    17885 1m2n:A (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    17886 1m2n:B (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    17887 1m2o:A (2.5) BS02 GNP ? GO:0000139 ... P15303 12239560
    17888 1m2o:B (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    17889 1m2o:D (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    17890 1m2p:A (2.0) BS01 HNA 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.11, Ki=0.78uM
    BindingDB: Ki=780nM
    17891 1m2q:A (1.79) BS01 MNX 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.10, Ki=0.80uM
    BindingDB: Ki=800nM
    17892 1m2r:A (1.7) BS01 MNY 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    BindingDB: Ki=350nM
    17893 1m2t:A (1.89) BS01 ADE 3.2.2.22 GO:0017148 ... P81446 12351890
    17894 1m2w:A (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    17895 1m2w:A (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    17896 1m2w:B (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    17897 1m2w:B (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    17898 1m2x:A (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    17899 1m2x:B (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    17900 1m2x:C (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    17901 1m2x:D (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    17902 1m2z:A (2.5) BS02 DEX ? N/A P04150 12151000 BindingDB: EC50=2.5nM, Ki=1.2nM, IC50=5nM, Kd=19nM
    17903 1m2z:D (2.5) BS02 DEX ? N/A P04150 12151000 BindingDB: EC50=2.5nM, Ki=1.2nM, IC50=5nM, Kd=19nM
    17904 1m32:A (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17905 1m32:A (2.2) BS02 POA 2.6.1.37 GO:0008483 ... P96060 12403617
    17906 1m32:B (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17907 1m32:B (2.2) BS02 PO4 2.6.1.37 GO:0008483 ... P96060 12403617
    17908 1m32:B (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17909 1m32:C (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17910 1m32:C (2.2) BS02 POA 2.6.1.37 GO:0008483 ... P96060 12403617
    17911 1m32:C (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17912 1m32:D (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17913 1m32:D (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17914 1m32:E (2.2) BS01 PO4 2.6.1.37 GO:0008483 ... P96060 12403617
    17915 1m32:E (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17916 1m32:E (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17917 1m32:F (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17918 1m32:F (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    17919 1m33:A (1.7) BS01 3OH 3.1.1.85 GO:0005515 ... P13001 12732651
    17920 1m34:A (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17921 1m34:A (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17922 1m34:B (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17923 1m34:C (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17924 1m34:C (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17925 1m34:D (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17926 1m34:E (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17927 1m34:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17928 1m34:E (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17929 1m34:E (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17930 1m34:F (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17931 1m34:F (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17932 1m34:F (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17933 1m34:F (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17934 1m34:F (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17935 1m34:G (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17936 1m34:G (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17937 1m34:G (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17938 1m34:G (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17939 1m34:H (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17940 1m34:H (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17941 1m34:H (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17942 1m34:H (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17943 1m34:I (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17944 1m34:I (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17945 1m34:J (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17946 1m34:K (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    17947 1m34:K (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    17948 1m34:L (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    17949 1m34:M (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17950 1m34:M (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17951 1m34:M (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17952 1m34:M (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17953 1m34:N (2.3) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17954 1m34:N (2.3) BS02 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17955 1m34:N (2.3) BS03 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17956 1m34:N (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17957 1m34:O (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17958 1m34:O (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17959 1m34:O (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17960 1m34:O (2.3) BS04 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17961 1m34:P (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17962 1m34:P (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    17963 1m34:P (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17964 1m34:P (2.3) BS04 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    17965 1m34:P (2.3) BS05 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    17966 1m3q:A (1.9) BS03 ANG 3.2.2.-
    4.2.99.18
    GO:0000978 ... O15527 15610848
    17967 1m3u:A (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17968 1m3u:B (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17969 1m3u:C (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17970 1m3u:D (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17971 1m3u:E (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17972 1m3u:F (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17973 1m3u:G (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17974 1m3u:H (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17975 1m3u:I (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17976 1m3u:J (1.8) BS02 KPL 2.1.2.11 GO:0000287 ... P31057 12906829
    17977 1m3x:L (2.55) BS01 BCL ? GO:0009772 ... P0C0Y8 12167672
    17978 1m3x:L (2.55) BS02 BCL ? GO:0009772 ... P0C0Y8 12167672
    17979 1m3x:L (2.55) BS03 BCL ? GO:0009772 ... P0C0Y8 12167672
    17980 1m3x:L (2.55) BS04 BPH ? GO:0009772 ... P0C0Y8 12167672
    17981 1m3x:L (2.55) BS05 U10 ? GO:0009772 ... P0C0Y8 12167672
    17982 1m3x:M (2.55) BS01 BCL ? GO:0009772 ... P0C0Y9 12167672
    17983 1m3x:M (2.55) BS02 BCL ? GO:0009772 ... P0C0Y9 12167672
    17984 1m3x:M (2.55) BS03 BPH ? GO:0009772 ... P0C0Y9 12167672
    17985 1m3x:M (2.55) BS05 BCL ? GO:0009772 ... P0C0Y9 12167672
    17986 1m3x:M (2.55) BS06 BPH ? GO:0009772 ... P0C0Y9 12167672
    17987 1m3x:M (2.55) BS07 U10 ? GO:0009772 ... P0C0Y9 12167672
    17988 1m3x:M (2.55) BS08 SPO ? GO:0009772 ... P0C0Y9 12167672
    17989 1m3x:M (2.55) BS09 CDL ? GO:0009772 ... P0C0Y9 12167672
    17990 1m3z:A (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    17991 1m3z:B (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    17992 1m3z:C (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    17993 1m3z:D (1.87) BS01 ACO 2.3.1.9 GO:0003985 ... P07097 12501183
    17994 1m40:A (0.85) BS01 CB4 3.5.2.6 GO:0005515 ... P62593 11996574
    17995 1m48:A (1.95) BS01 FRG ? GO:0002250 ... P60568 12582206 MOAD: Kd=8.2uM
    PDBbind: -logKd/Ki=5.09, Kd=8.2uM
    17996 1m48:B (1.95) BS01 FRG ? GO:0002250 ... P60568 12582206 MOAD: Kd=8.2uM
    17997 1m49:A (2.0) BS01 CMM ? GO:0002250 ... P60568 12582206
    17998 1m49:B (2.0) BS01 CMM ? GO:0002250 ... P60568 12582206
    17999 1m4a:A (2.18) BS01 MPE ? GO:0002250 ... P60568 12582206
    18000 1m4b:A (2.15) BS01 NMP ? GO:0002250 ... P60568 12582206

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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