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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15601 1kh4:B (2.4) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    15602 1kh5:A (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    15603 1kh5:B (2.0) BS04 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    15604 1kh9:A (2.5) BS04 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    15605 1kh9:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    15606 1khf:A (2.02) BS02 PEP 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 11851336
    15607 1khh:A (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    15608 1khh:B (2.5) BS01 SAH 2.1.1.2 GO:0030731 ... P10868 12079381
    15609 1khj:A (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    15610 1khj:B (2.3) BS03 AF3 3.1.3.1 GO:0000287 ... P00634 11884134
    15611 1khl:A (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    15612 1khl:B (2.5) BS03 PO4 3.1.3.1 GO:0000287 ... P00634 11884134
    15613 1khr:A (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    15614 1khr:A (2.8) BS02 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    15615 1khr:A (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15616 1khr:A (2.8) BS04 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15617 1khr:B (2.8) BS01 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    15618 1khr:B (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15619 1khr:B (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15620 1khr:C (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15621 1khr:C (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15622 1khr:D (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15623 1khr:D (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15624 1khr:E (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15625 1khr:E (2.8) BS02 VIR 2.3.1.- GO:0016740 ... P50870 11841212
    15626 1khr:E (2.8) BS03 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15627 1khr:F (2.8) BS01 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15628 1khr:F (2.8) BS02 COA 2.3.1.- GO:0016740 ... P50870 11841212
    15629 1kht:B (2.5) BS01 AMP 2.7.4.3 GO:0004017 ... P43411 12860130
    15630 1kht:C (2.5) BS01 AMP 2.7.4.3 GO:0004017 ... P43411 12860130
    15631 1khz:A (2.04) BS01 ADV 3.6.1.13 GO:0000287 ... Q93K97 12135348
    15632 1khz:B (2.04) BS03 ADV 3.6.1.13 GO:0000287 ... Q93K97 12135348
    15633 1ki0:A (1.75) BS01 BCN 3.4.21.7 N/A P00747 12054798
    15634 1ki0:A (1.75) BS02 BCN 3.4.21.7 N/A P00747 12054798
    15635 1ki0:A (1.75) BS03 BCN 3.4.21.7 N/A P00747 12054798
    15636 1ki2:A (2.2) BS01 GA2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15637 1ki2:B (2.2) BS01 GA2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15638 1ki3:A (2.37) BS01 PE2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15639 1ki3:B (2.37) BS01 PE2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15640 1ki4:A (2.34) BS01 BTD 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15641 1ki4:B (2.34) BS01 BTD 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15642 1ki6:A (2.37) BS01 AHU 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15643 1ki6:B (2.37) BS01 AHU 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15644 1ki7:A (2.2) BS01 ID2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15645 1ki7:B (2.2) BS01 ID2 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15646 1ki8:A (2.2) BS01 BVD 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15647 1ki8:B (2.2) BS01 BVD 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15648 1kia:A (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    15649 1kia:B (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    15650 1kia:C (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    15651 1kia:D (2.8) BS01 SAM 2.1.1.20 GO:0005542 ... P13255 N/A
    15652 1kib:A (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15653 1kib:B (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15654 1kib:C (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15655 1kib:D (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15656 1kib:E (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15657 1kib:F (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15658 1kib:G (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15659 1kib:H (3.5) BS01 HEC ? GO:0005506 ... P00118 12077429
    15660 1kic:A (1.6) BS02 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15661 1kic:A (1.6) BS03 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15662 1kic:A (1.6) BS04 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15663 1kic:B (1.6) BS02 NOS 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15664 1kie:A (2.0) BS02 AD3 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15665 1kie:B (2.0) BS02 AD3 3.2.2.1 GO:0006139 ... Q9GPQ4 11854281
    15666 1kif:A (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15667 1kif:B (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15668 1kif:C (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15669 1kif:D (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15670 1kif:E (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15671 1kif:F (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15672 1kif:G (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15673 1kif:H (2.6) BS01 FAD 1.4.3.3 GO:0003884 ... P00371 8755502
    15674 1kij:A (2.3) BS01 NOV 5.6.2.2 GO:0003677 ... Q5SHZ4 11850422
    15675 1kij:B (2.3) BS01 NOV 5.6.2.2 GO:0003677 ... Q5SHZ4 11850422
    15676 1kim:A (2.14) BS01 THM 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15677 1kim:B (2.14) BS01 THM 2.7.1.21 GO:0004797 ... P0DTH5 9715911
    15678 1kiu:B (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15679 1kiu:D (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15680 1kiu:F (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15681 1kiu:H (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15682 1kiu:J (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15683 1kiu:L (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15684 1kiu:N (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15685 1kiu:P (3.0) BS01 MMA ? GO:0005515 ... P08191 12010488
    15686 1kiz:B (2.6) BS01 POP 4.2.3.6 GO:0016106 ... P13513 11827517
    15687 1kj1:A (2.2) BS01 MAN ? N/A Q38789 11856826
    15688 1kj1:A (2.2) BS02 MAN ? N/A Q38789 11856826
    15689 1kj1:A (2.2) BS03 MAN ? N/A Q38789 11856826
    15690 1kj1:A (2.2) BS04 MAN ? N/A Q38789 11856826
    15691 1kj1:A (2.2) BS05 MAN ? N/A Q38789 11856826
    15692 1kj1:D (2.2) BS01 MAN ? N/A Q38783 11856826
    15693 1kj1:D (2.2) BS02 MAN ? N/A Q38783 11856826
    15694 1kj1:D (2.2) BS03 MAN ? N/A Q38783 11856826
    15695 1kj1:D (2.2) BS04 MAN ? N/A Q38783 11856826
    15696 1kj1:D (2.2) BS05 MAN ? N/A Q38783 11856826
    15697 1kj1:P (2.2) BS01 MAN ? N/A Q38789 11856826
    15698 1kj1:P (2.2) BS02 MAN ? N/A Q38789 11856826
    15699 1kj1:P (2.2) BS03 MAN ? N/A Q38789 11856826
    15700 1kj1:P (2.2) BS04 MAN ? N/A Q38789 11856826
    15701 1kj1:P (2.2) BS05 MAN ? N/A Q38789 11856826
    15702 1kj1:Q (2.2) BS01 MAN ? N/A Q38783 11856826
    15703 1kj1:Q (2.2) BS02 MAN ? N/A Q38783 11856826
    15704 1kj1:Q (2.2) BS03 MAN ? N/A Q38783 11856826
    15705 1kj1:Q (2.2) BS04 MAN ? N/A Q38783 11856826
    15706 1kj1:Q (2.2) BS05 MAN ? N/A Q38783 11856826
    15707 1kj2:A (2.71) BS01 SIA N/A N/A N/A 11911820
    15708 1kj8:A (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    15709 1kj8:A (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    15710 1kj8:B (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    15711 1kj8:B (1.6) BS03 GAR 6.3.1.21 GO:0000287 ... P33221 11953435
    15712 1kj9:A (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    15713 1kj9:B (1.6) BS02 ATP 6.3.1.21 GO:0000287 ... P33221 11953435
    15714 1kji:A (1.6) BS02 ACP 6.3.1.21 GO:0000287 ... P33221 11953435
    15715 1kji:B (1.6) BS02 ACP 6.3.1.21 GO:0000287 ... P33221 11953435
    15716 1kjj:A (1.75) BS02 AGS 6.3.1.21 GO:0000287 ... P33221 11953435
    15717 1kjj:B (1.75) BS02 AGS 6.3.1.21 GO:0000287 ... P33221 11953435
    15718 1kjl:A (1.4) BS01 GAL ? GO:0030246 ... P17931 15701008
    15719 1kjo:A (1.6) BS06 THR 3.4.24.27 GO:0004222 ... P00800 N/A
    15720 1kjp:A (1.6) BS06 GLU 3.4.24.27 GO:0004222 ... P00800 N/A
    15721 1kjq:A (1.05) BS02 ADP 6.3.1.21 GO:0000287 ... P33221 11953435
    15722 1kjq:B (1.05) BS01 ADP 6.3.1.21 GO:0000287 ... P33221 11953435
    15723 1kjr:A (1.55) BS01 GAL ? GO:0030246 ... P17931 15701008 PDBbind: -logKd/Ki=6.06, Kd=0.88uM
    15724 1kjr:A (1.55) BS02 BEK ? GO:0030246 ... P17931 15701008 PDBbind: -logKd/Ki=6.06, Kd=0.88uM
    15725 1kjx:A (2.6) BS01 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    15726 1kjy:A (2.7) BS01 GDP ? GO:0000287 ... P63096 11976690
    15727 1kjy:C (2.7) BS01 GDP ? GO:0000287 ... P63096 11976690
    15728 1kk1:A (1.8) BS02 GNP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    15729 1kk2:A (2.1) BS02 GDP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    15730 1kk3:A (1.9) BS02 GDP 3.6.5.3 GO:0000049 ... Q9V1G0 11927566
    15731 1kk4:A (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15732 1kk4:A (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15733 1kk4:B (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15734 1kk4:B (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15735 1kk4:C (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15736 1kk4:C (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15737 1kk4:D (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15738 1kk4:D (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15739 1kk4:E (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15740 1kk4:E (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15741 1kk4:F (2.7) BS01 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15742 1kk4:F (2.7) BS02 ACO 2.3.1.- GO:0016740 ... P50870 11841212
    15743 1kk8:A (2.3) BS02 BEF ? GO:0003774 ... P24733 12297624
    15744 1kk8:A (2.3) BS03 ADP ? GO:0003774 ... P24733 12297624
    15745 1kkb:A (2.6) BS01 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    15746 1kkb:A (2.6) BS02 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    15747 1kkf:A (2.6) BS02 HDA 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    15748 1kkf:A (2.6) BS03 IMP 6.3.4.4 GO:0000166 ... P0A7D4 11741996
    15749 1kkj:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15750 1kkk:A (1.6) BS06 ASP 3.4.24.27 GO:0004222 ... P00800 N/A
    15751 1kkp:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15752 1kkp:A (1.93) BS02 SER 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15753 1kkq:A (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213 PDBbind: -logKd/Ki=6.62, IC50=0.24uM
    15754 1kkq:B (3.0) BS03 471 ? GO:0003677 ... Q07869 11845213
    15755 1kkq:C (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    15756 1kkq:D (3.0) BS02 471 ? GO:0003677 ... Q07869 11845213
    15757 1kkr:A (2.1) BS02 2AS 4.3.1.2 GO:0016829 ... O66145 11796115
    15758 1kkr:B (2.1) BS01 2AS 4.3.1.2 GO:0016829 ... O66145 11796115
    15759 1kkt:A (2.2) BS01 MAN 3.2.1.113 GO:0004571 ... P31723 11714724
    15760 1kl1:A (1.93) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15761 1kl1:A (1.93) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15762 1kl2:A (2.7) BS01 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15763 1kl2:A (2.7) BS02 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15764 1kl2:A (2.7) BS03 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15765 1kl2:A (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15766 1kl2:A (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15767 1kl2:B (2.7) BS01 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15768 1kl2:B (2.7) BS02 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15769 1kl2:B (2.7) BS03 PLP 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15770 1kl2:B (2.7) BS04 GLY 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15771 1kl2:B (2.7) BS05 FON 2.1.2.1 GO:0003824 ... Q7SIB6 11877399
    15772 1kl6:A (1.8) BS06 ALA 3.4.24.27 GO:0004222 ... P00800 N/A
    15773 1kl7:A (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    15774 1kl7:B (2.7) BS01 PLP 4.2.3.1 GO:0004795 ... P16120 11756443
    15775 1klf:B (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15776 1klf:D (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15777 1klf:F (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15778 1klf:H (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15779 1klf:J (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15780 1klf:L (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15781 1klf:N (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15782 1klf:P (2.79) BS01 MAN ? GO:0005515 ... P08191 12010488
    15783 1kli:H (1.69) BS02 BEN 3.4.21.21 GO:0004252 ... P08709 12225752
    15784 1klj:H (2.44) BS02 EDO 3.4.21.21 GO:0004252 ... P08709 12225752
    15785 1klk:A (2.3) BS01 PMD 1.5.1.3 GO:0004146 ... P16184 12037296 MOAD: ic50=0.21uM
    BindingDB: IC50=210nM
    15786 1klk:A (2.3) BS02 NDP 1.5.1.3 GO:0004146 ... P16184 12037296
    15787 1kll:A (1.5) BS01 MC ? N/A O05205 12121648 PDBbind: -logKd/Ki=5.20, Kd=6.3uM
    15788 1klm:A (2.65) BS01 SPP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 9108091
    15789 1kly:A (1.5) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15790 1klz:A (1.5) BS01 CL 4.1.1.23 GO:0004590 ... O26232 11900543
    15791 1klz:A (1.5) BS02 U 4.1.1.23 GO:0004590 ... O26232 11900543
    15792 1km0:A (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15793 1km0:A (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15794 1km0:B (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15795 1km0:B (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15796 1km0:C (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15797 1km0:C (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15798 1km0:D (1.7) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15799 1km0:D (1.7) BS02 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM
    15800 1km1:A (1.6) BS01 UP6 4.1.1.23 GO:0004590 ... O26232 11900543 BindingDB: Ki=12400nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218