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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    437201 8ptq:A (1.55) BS01 EJI 3.1.1.23 GO:0004622 ... Q99685 38241614
    437202 8ptr:A (1.73) BS01 EFH 3.1.1.23 GO:0004622 ... Q99685 38241614
    437203 8pts:A (1.76) BS01 EIF N/A GO:0001917 ... Q16774 39190717
    437204 8pts:B (1.76) BS01 EIF N/A GO:0001917 ... Q16774 39190717
    437205 8ptt:A (2.5) BS01 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437206 8ptt:A (2.5) BS03 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437207 8ptt:B (2.5) BS01 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437208 8ptt:B (2.5) BS02 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437209 8ptt:C (2.5) BS01 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437210 8ptt:C (2.5) BS03 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437211 8ptt:D (2.5) BS01 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437212 8ptt:D (2.5) BS02 F2V N/A GO:0000287 ... Q9UKK9 N/A
    437213 8ptv:A (1.6) BS02 ACV N/A GO:0005737 ... P05326 N/A
    437214 8ptx:C (2.87) BS02 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437215 8ptx:C (2.87) BS03 ACO 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437216 8ptx:C (2.87) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437217 8pty:C (3.58) BS01 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437218 8pty:C (3.58) BS02 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437219 8ptz:C (3.35) BS02 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437220 8ptz:C (3.35) BS03 A2U 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437221 8ptz:C (3.35) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437222 8pu0:C (4.25) BS02 DCA 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437223 8pu0:C (4.25) BS03 SF4 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437224 8pu0:C (4.25) BS04 MET 2.3.1.311 GO:0000049 ... Q9H9T3 38750017
    437225 8pu1:A (1.702) BS01 POL N/A N/A A0A3E3DY87 N/A
    437226 8pu1:B (1.702) BS02 POL N/A GO:0015970 ... A0A3E3DY42 N/A
    437227 8pu1:B (1.702) BS03 POL N/A GO:0015970 ... A0A3E3DY42 N/A
    437228 8pu1:B (1.702) BS04 POL N/A GO:0015970 ... A0A3E3DY42 N/A
    437229 8pu1:B (1.702) BS05 APC N/A GO:0015970 ... A0A3E3DY42 N/A
    437230 8pu4:A (2.62) BS01 DOU N/A GO:0015970 ... A0A3E3DY42 N/A
    437231 8pu4:B (2.62) BS01 DOU N/A GO:0015970 ... A0A3E3DY42 N/A
    437232 8pu4:C (2.62) BS01 DOU N/A GO:0015970 ... A0A3E3DY42 N/A
    437233 8puj:A (1.7) BS01 CBY N/A N/A A0A0P0F756 N/A
    437234 8pun:A (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437235 8pun:A (2.3) BS02 9D2 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437236 8pun:B (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437237 8pun:B (2.3) BS02 9D2 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437238 8pun:C (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437239 8pun:D (2.3) BS01 FMN 1.6.99.1 GO:0000166 ... A0A0R0LNE8 N/A
    437240 8puq:A (1.95) BS01 HEM ? GO:0004601 ... P01958 37860963
    437241 8puq:B (1.95) BS01 HEM ? GO:0004601 ... P02062 37860963
    437242 8pur:A (1.85) BS01 HEM ? GO:0004601 ... P01958 37860963
    437243 8pur:B (1.85) BS01 HEM ? GO:0004601 ... P02062 37860963
    437244 8put:A (2.0) BS01 NAD N/A GO:0005737 ... C4KGY0 38582076
    437245 8put:A (2.0) BS02 NAD N/A GO:0005737 ... C4KGY0 38582076
    437246 8put:B (2.0) BS01 NAD N/A GO:0005737 ... C4KGY0 38582076
    437247 8put:B (2.0) BS02 NAD N/A GO:0005737 ... C4KGY0 38582076
    437248 8put:C (2.0) BS01 NAD N/A GO:0005737 ... C4KGY0 38582076
    437249 8put:C (2.0) BS02 NAD N/A GO:0005737 ... C4KGY0 38582076
    437250 8put:D (2.0) BS01 NAD N/A GO:0005737 ... C4KGY0 38582076
    437251 8put:D (2.0) BS02 NAD N/A GO:0005737 ... C4KGY0 38582076
    437252 8pux:A (2.05) BS01 B3F ? N/A Q15562 38116405
    437253 8puy:B (2.2) BS01 F3Y ? N/A Q15562 38116405
    437254 8pv1:CH (2.56) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437255 8pv1:Cd (2.56) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437256 8pv2:CH (2.63) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437257 8pv2:Cd (2.63) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437258 8pv3:CH (2.8) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437259 8pv3:Cd (2.8) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    437260 8pv4:CH (2.9) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437261 8pv4:Cd (2.9) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437262 8pv5:CH (2.86) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437263 8pv5:Cd (2.86) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437264 8pv6:CH (2.94) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437265 8pv6:Cd (2.94) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437266 8pv7:CH (2.12) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437267 8pv7:Cd (2.12) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437268 8pv8:CH (2.91) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437269 8pv8:Cd (2.91) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437270 8pvb:A (3.6) BS01 HSM ? GO:0004888 ... P28472 38011573
    437271 8pvb:A (3.6) BS02 V8D ? GO:0004888 ... P28472 38011573
    437272 8pvd:A (3.4) BS01 NDP 1.11.1.6 GO:0000302 ... P04040 38011573
    437273 8pvd:A (3.4) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 38011573
    437274 8pvf:A (2.9) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 38011573
    437275 8pvk:CH (2.55) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437276 8pvk:Cd (2.55) BS02 GTP ? GO:0005525 ... G0SBX1 37921038
    437277 8pvl:CH (2.19) BS03 GTP ? GO:0003723 ... G0S8F1 37921038
    437278 8pvl:Cd (2.19) BS04 GTP ? GO:0005525 ... G0SBX1 37921038
    437279 8pvm:A (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    437280 8pvm:A (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437281 8pvm:A (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437282 8pvm:A (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437283 8pvm:A (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437284 8pvm:A (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    437285 8pvm:A (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    437286 8pvm:B (1.38) BS01 402 1.12.7.2 GO:0005506 ... P29166 37983562
    437287 8pvm:B (1.38) BS02 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437288 8pvm:B (1.38) BS03 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437289 8pvm:B (1.38) BS04 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437290 8pvm:B (1.38) BS05 SF4 1.12.7.2 GO:0005506 ... P29166 37983562
    437291 8pvm:B (1.38) BS06 FES 1.12.7.2 GO:0005506 ... P29166 37983562
    437292 8pvm:B (1.38) BS07 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    437293 8pvm:B (1.38) BS08 74C 1.12.7.2 GO:0005506 ... P29166 37983562
    437294 8pvo:A (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    437295 8pvo:B (2.25) BS01 FW3 2.7.11.1 GO:0004672 ... P68400 39067440
    437296 8pvp:A (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    437297 8pvp:B (2.6) BS01 FWU 2.7.11.1 GO:0004672 ... P68400 39067440
    437298 8pvr:A (3.06) BS01 EUJ N/A N/A F7B113 N/A
    437299 8pvr:B (3.06) BS01 EUJ N/A N/A F7B113 N/A
    437300 8pvs:A (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    437301 8pvs:B (1.68) BS01 GLA 3.2.1.22
    3.2.1.n1
    3.2.1.n2    		 GO:0004557 ... B2UNU8 38684911
    437302 8pvx:A (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    437303 8pvx:B (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    437304 8pvx:C (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    437305 8pvx:D (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    437306 8pvx:E (3.55) BS02 ADP N/A GO:0000287 ... P68135 N/A
    437307 8pw1:A (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437308 8pw1:B (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437309 8pw1:C (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437310 8pw1:D (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437311 8pw1:E (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437312 8pw1:F (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437313 8pw1:G (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437314 8pw1:H (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437315 8pw1:I (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437316 8pw1:J (2.2) BS01 GKO 3.4.19.12 GO:0002176 ... P09936 38239128
    437317 8pw5:1 (3.6) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437318 8pw5:1 (3.6) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437319 8pw5:2 (3.6) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    437320 8pw5:3 (3.6) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437321 8pw5:3 (3.6) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437322 8pw5:3 (3.6) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437323 8pw5:6 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    437324 8pw5:9 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437325 8pw5:9 (3.6) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437326 8pw5:C (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    437327 8pw5:C (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    437328 8pw5:D (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437329 8pw5:D1 (3.6) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    437330 8pw5:E (3.6) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437331 8pw5:N (3.6) BS01 HEM ? GO:0001666 ... P00158 38575788
    437332 8pw5:N (3.6) BS02 HEM ? GO:0001666 ... P00158 38575788
    437333 8pw5:O (3.6) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437334 8pw5:O1 (3.6) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    437335 8pw5:P (3.6) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437336 8pw5:P1 (3.6) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    437337 8pw5:W1 (3.6) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    437338 8pw5:a (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437339 8pw5:a (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437340 8pw5:b (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    437341 8pw5:b (3.6) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    437342 8pw5:n (3.6) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437343 8pw5:n (3.6) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437344 8pw5:n1 (3.6) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    437345 8pw5:o (3.6) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    437346 8pw5:o (3.6) BS03 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    437347 8pw6:1 (3.3) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437348 8pw6:1 (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437349 8pw6:2 (3.3) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    437350 8pw6:3 (3.3) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437351 8pw6:3 (3.3) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437352 8pw6:3 (3.3) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437353 8pw6:6 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    437354 8pw6:9 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437355 8pw6:9 (3.3) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437356 8pw6:C (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    437357 8pw6:C (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    437358 8pw6:D (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437359 8pw6:D1 (3.3) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    437360 8pw6:E (3.3) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437361 8pw6:N (3.3) BS01 HEM ? GO:0001666 ... P00158 38575788
    437362 8pw6:N (3.3) BS02 HEM ? GO:0001666 ... P00158 38575788
    437363 8pw6:O (3.3) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437364 8pw6:O1 (3.3) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    437365 8pw6:P (3.3) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437366 8pw6:P1 (3.3) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    437367 8pw6:W1 (3.3) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    437368 8pw6:n (3.3) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437369 8pw6:n (3.3) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437370 8pw6:n1 (3.3) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    437371 8pw6:o (3.3) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    437372 8pw6:o (3.3) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    437373 8pw7:1 (3.5) BS01 FMN 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437374 8pw7:1 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91YT0 38575788
    437375 8pw7:2 (3.5) BS01 FES 7.1.1.2 GO:0005739 ... Q9D6J6 38575788
    437376 8pw7:3 (3.5) BS01 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437377 8pw7:3 (3.5) BS02 SF4 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437378 8pw7:3 (3.5) BS03 FES 7.1.1.2 GO:0005515 ... Q91VD9 38575788
    437379 8pw7:6 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q9DC70 38575788
    437380 8pw7:9 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437381 8pw7:9 (3.5) BS02 SF4 7.1.1.2 GO:0003954 ... Q8K3J1 38575788
    437382 8pw7:C (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    437383 8pw7:C (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    437384 8pw7:D (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437385 8pw7:D1 (3.5) BS01 SF4 7.1.1.2 GO:0003954 ... Q91WD5 38575788
    437386 8pw7:E (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437387 8pw7:N (3.5) BS01 HEM ? GO:0001666 ... P00158 38575788
    437388 8pw7:N (3.5) BS02 HEM ? GO:0001666 ... P00158 38575788
    437389 8pw7:O (3.5) BS01 HEC 7.1.1.8 GO:0005515 ... Q9D0M3 38575788
    437390 8pw7:O1 (3.5) BS01 DGT ? GO:0005739 ... Q99LC3 38575788
    437391 8pw7:P (3.5) BS01 FES 7.1.1.8 GO:0005515 ... Q9CR68 38575788
    437392 8pw7:P1 (3.5) BS01 NDP ? GO:0003954 ... Q9DC69 38575788
    437393 8pw7:T1 (3.5) BS01 ZMP ? GO:0005654 ... Q9CR21 38575788
    437394 8pw7:W1 (3.5) BS01 ZMP ? GO:0003674 ... Q9CQZ5 38575788
    437395 8pw7:n (3.5) BS02 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437396 8pw7:n (3.5) BS03 HEA 7.1.1.9 GO:0001666 ... P00397 38575788
    437397 8pw7:n1 (3.5) BS01 ZMP ? GO:0005739 ... Q9CQJ8 38575788
    437398 8pw7:o (3.5) BS01 HEA 7.1.1.9 GO:0001666 ... P00405 38575788
    437399 8pw7:o (3.5) BS02 CUA 7.1.1.9 GO:0001666 ... P00405 38575788
    437400 8pw8:A (2.3) BS01 HZ2 2.1.1.348 GO:0001510 ... Q9HCE5 38470714
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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