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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    435201 8oxb:A (2.99) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    435202 8oxc:A (2.58) BS01 VN4 7.6.2.1 GO:0000166 ... O43520 37980352
    435203 8oxc:A (2.58) BS03 PIE 7.6.2.1 GO:0000166 ... O43520 37980352
    435204 8oxe:A (2.26) BS01 ADP 2.7.1.134 GO:0000287 ... A4H2J0 38146842
    435205 8oxg:A (1.731) BS01 W5N 3.4.11.18 GO:0006508 ... P50579 38530115
    435206 8oxg:B (1.731) BS01 W5N 3.4.11.18 GO:0006508 ... P50579 38530115
    435207 8oxm:A (3.3) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435208 8oxm:B (3.3) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435209 8oxn:AAA (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    435210 8oxn:BBB (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    435211 8oxn:CCC (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    435212 8oxn:DDD (2.0) BS01 VFH 1.13.11.48 GO:0003824 ... O31266 37799987
    435213 8oxo:A (3.0) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435214 8oxo:B (3.0) BS02 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435215 8oxp:A (2.6) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435216 8oxp:B (2.6) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435217 8oxq:A (2.5) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435218 8oxq:B (2.5) BS01 ANP 2.7.11.1 GO:0000077 ... Q13315 37756394
    435219 8oxs:C (1.6) BS01 GLA N/A N/A P01556 N/A
    435220 8oxs:C (1.6) BS02 GAL N/A N/A P01556 N/A
    435221 8oxs:D (1.6) BS01 GLA N/A N/A P01556 N/A
    435222 8oxs:D (1.6) BS02 GAL N/A N/A P01556 N/A
    435223 8oxs:E (1.6) BS01 GLA N/A N/A P01556 N/A
    435224 8oxs:E (1.6) BS02 GAL N/A N/A P01556 N/A
    435225 8oxs:F (1.6) BS01 GAL N/A N/A P01556 N/A
    435226 8oxs:G (1.6) BS01 GAL N/A N/A P01556 N/A
    435227 8oxs:G (1.6) BS02 GLA N/A N/A P01556 N/A
    435228 8oxs:H (1.6) BS01 GAL N/A N/A P01556 N/A
    435229 8oxs:H (1.6) BS02 GLA N/A N/A P01556 N/A
    435230 8oxs:I (1.6) BS01 GAL N/A N/A P01556 N/A
    435231 8oxs:K (1.6) BS01 GLA N/A N/A P01556 N/A
    435232 8oxs:K (1.6) BS02 GAL N/A N/A P01556 N/A
    435233 8oxs:L (1.6) BS01 GLA N/A N/A P01556 N/A
    435234 8oxs:L (1.6) BS02 GAL N/A N/A P01556 N/A
    435235 8oxt:AAA (2.003) BS01 ZZ8 1.13.11.48 GO:0003824 ... O31266 37799987
    435236 8oxt:BBB (2.003) BS01 ZZ8 1.13.11.48 GO:0003824 ... O31266 37799987
    435237 8oxu:B (2.94) BS01 W5R ? GO:0005524 ... P02829 37509087
    435238 8oxu:C (2.94) BS01 W5R ? GO:0005524 ... P02829 37509087
    435239 8oxx:A (2.5) BS04 P6S 2.3.2.13 GO:0018149 ... Q08188 37798283
    435240 8oxx:A (2.5) BS05 ONL 2.3.2.13 GO:0018149 ... Q08188 37798283
    435241 8oxx:A (2.5) BS06 DVA 2.3.2.13 GO:0018149 ... Q08188 37798283
    435242 8oy1:A (3.34) BS01 GDP ? GO:0000139 ... P08754 N/A
    435243 8oy2:A (2.618) BS01 W5W 2.7.11.22 GO:0000082 ... P24941 37983497
    435244 8oy3:A (2.16) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435245 8oy3:B (2.16) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435246 8oy4:A (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435247 8oy4:B (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435248 8oy5:A (2.27) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435249 8oy5:B (2.27) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435250 8oy6:A (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435251 8oy6:B (2.35) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435252 8oy7:A (2.36) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435253 8oy7:B (2.36) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435254 8oy8:A (2.39) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435255 8oy8:B (2.39) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435256 8oy9:A (2.24) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435257 8oy9:B (2.24) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435258 8oya:A (2.18) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435259 8oya:B (2.18) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435260 8oyb:A (2.25) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435261 8oyb:B (2.25) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435262 8oyc:A (2.5) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435263 8oyc:B (2.5) BS03 FDA 4.1.99.3 GO:0000166 ... Q8PYK9 38033070
    435264 8oyg:A (2.3) BS03 PAF ? GO:0016020 ... Q9K0A9 37645971
    435265 8oyi:C (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435266 8oyi:C (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435267 8oyi:C (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435268 8oyi:G (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435269 8oyi:G (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435270 8oyi:G (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435271 8oyi:K (2.19) BS02 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435272 8oyi:K (2.19) BS03 HXG 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435273 8oyi:K (2.19) BS04 ETF 1.14.13.25 GO:0004497 ... Q603F1 38187819
    435274 8oyq:A (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    435275 8oyq:B (1.8) BS01 W6T 2.7.13.3 GO:0016310 ... Q56310 N/A
    435276 8oyz:A (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    435277 8oyz:B (1.85) BS01 WXC 2.7.13.3 GO:0016310 ... Q56310 N/A
    435278 8oz1:A (1.3) BS01 RBH 3.2.1.4 GO:0000272 ... B3PD52 38161374
    435279 8oz1:A (1.3) BS02 YLL 3.2.1.4 GO:0000272 ... B3PD52 38161374
    435280 8oz2:A (1.04) BS01 NAP 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    435281 8oz2:A (1.04) BS02 30L 1.1.1.21
    1.1.1.300
    1.1.1.372
    1.1.1.54    		 GO:0001523 ... P15121 N/A
    435282 8oz5:A (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435283 8oz5:A (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435284 8oz5:B (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435285 8oz5:B (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435286 8oz5:C (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435287 8oz5:C (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435288 8oz5:D (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435289 8oz5:D (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435290 8oz5:E (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435291 8oz5:E (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435292 8oz5:F (2.04) BS01 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435293 8oz5:F (2.04) BS02 WC8 N/A GO:0005737 ... A0A193DUB4 N/A
    435294 8oz8:A (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    435295 8oz8:B (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    435296 8oz8:C (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    435297 8oz8:D (1.85) BS01 NM2 4.1.2.10 GO:0016829 ... E8WYN5 N/A
    435298 8oz9:A (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    435299 8oz9:B (1.4) BS01 W6E 2.7.13.3 GO:0016310 ... Q56310 N/A
    435300 8oza:A (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    435301 8oza:B (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    435302 8oza:C (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    435303 8oza:D (1.8) BS01 WRH 3.4.22.15 GO:0006508 ... P07711 38630165
    435304 8ozf:A (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435305 8ozf:C (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435306 8ozf:F (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435307 8ozf:H (3.73) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435308 8ozg:A (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435309 8ozg:C (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435310 8ozg:F (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435311 8ozg:H (3.37) BS03 AR6 ? GO:0007165 ... A0A316E683 37467330
    435312 8ozi:A (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    435313 8ozi:C (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    435314 8ozi:E (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    435315 8ozi:G (3.22) BS03 NAD ? GO:0007165 ... A0A316E683 37467330
    435316 8ozp:A (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    435317 8ozp:H (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    435318 8ozp:L (11.9) BS01 MAN N/A N/A A0A1Q1N9U9 39013471
    435319 8ozp:L (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    435320 8ozv:A (1.52) BS01 NDP ? GO:0000166 ... A0A179UH34 37581897
    435321 8ozv:A (1.52) BS02 W65 ? GO:0000166 ... A0A179UH34 37581897
    435322 8ozw:A (2.01) BS01 TXP ? GO:0000166 ... A0A179UH34 37581897
    435323 8ozw:B (2.01) BS01 TXP ? GO:0000166 ... A0A179UH34 37581897
    435324 8p01:A (2.094) BS01 W78 ? GO:0002218 ... Q86WV6 37450324
    435325 8p02:A (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435326 8p02:A (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435327 8p02:B (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435328 8p02:B (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435329 8p02:C (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435330 8p02:C (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435331 8p02:D (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435332 8p02:D (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435333 8p02:E (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435334 8p02:E (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435335 8p02:F (2.3) BS01 BYC N/A GO:0005737 ... A0A193DUB4 N/A
    435336 8p02:F (2.3) BS02 BYN N/A GO:0005737 ... A0A193DUB4 N/A
    435337 8p04:A (2.6) BS01 WAK 2.7.12.1 GO:0004672 ... P49759 37487467
    435338 8p05:A (2.45) BS01 WAK 2.7.11.1 GO:0004672 ... P68400 37487467
    435339 8p05:B (2.45) BS01 WAK 2.7.11.1 GO:0004672 ... P68400 37487467
    435340 8p06:A (2.4) BS01 WAU 2.7.11.1 GO:0004672 ... P68400 38959455
    435341 8p06:B (2.4) BS01 WAU 2.7.11.1 GO:0004672 ... P68400 38959455
    435342 8p07:A (2.4) BS01 WAP 2.7.11.1 GO:0004672 ... P68400 38959455
    435343 8p07:B (2.4) BS01 WAP 2.7.11.1 GO:0004672 ... P68400 38959455
    435344 8p08:A (2.4) BS01 WAZ 2.7.12.1 GO:0004672 ... P49759 38051674
    435345 8p0a:A (3.67) BS01 ATP N/A N/A Q14683 N/A
    435346 8p0a:A (3.67) BS02 ATP N/A N/A Q14683 N/A
    435347 8p0a:B (3.67) BS01 ATP N/A N/A Q9UQE7 N/A
    435348 8p0a:B (3.67) BS02 ATP N/A N/A Q9UQE7 N/A
    435349 8p0e:A (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13    		 N/A G3M8F4 38289106
    435350 8p0e:B (1.59) BS01 APR 2.7.7.48
    3.6.1.15
    3.6.4.13    		 N/A G3M8F4 38289106
    435351 8p0f:A (1.98) BS01 WBN ? N/A P40337 N/A
    435352 8p0f:D (1.98) BS01 WBN ? N/A P40337 N/A
    435353 8p0i:A (3.5) BS01 WC3 N/A N/A Q9UIQ6 39167040
    435354 8p0i:B (3.5) BS01 WC3 N/A N/A Q9UIQ6 39167040
    435355 8p0m:A (1.961) BS01 WCF ? N/A Q99594 38565920
    435356 8p0m:B (1.961) BS01 WCF ? N/A Q99594 38565920
    435357 8p0m:C (1.961) BS01 WCF N/A N/A Q99594 38565920
    435358 8p0m:D (1.961) BS01 WCF N/A N/A Q99594 38565920
    435359 8p0o:A (1.76) BS01 GDU N/A N/A N/A 37723184
    435360 8p0o:B (1.76) BS01 GDU N/A N/A N/A 37723184
    435361 8p0p:A (2.73) BS01 U2F N/A N/A N/A 37723184
    435362 8p0p:B (2.73) BS01 UDP N/A N/A N/A 37723184
    435363 8p0q:A (2.8) BS02 UDP N/A N/A N/A 37723184
    435364 8p0q:B (2.8) BS02 UDP N/A N/A N/A 37723184
    435365 8p0t:I (2.65) BS01 X5C 3.4.25.1 N/A A2F2T6 N/A
    435366 8p0t:J (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 N/A
    435367 8p0t:L (2.65) BS01 X5C 3.4.25.1 N/A A2DD57 N/A
    435368 8p0t:M (2.65) BS01 X5C ? GO:0000502 ... A2F716 N/A
    435369 8p0t:W (2.65) BS01 X5C 3.4.25.1 N/A A2F2T6 N/A
    435370 8p0t:X (2.65) BS01 X5C ? GO:0000502 ... A2F3H9 N/A
    435371 8p0t:Z (2.65) BS01 X5C 3.4.25.1 N/A A2DD57 N/A
    435372 8p0t:a (2.65) BS01 X5C ? GO:0000502 ... A2F716 N/A
    435373 8p11:D (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435374 8p11:E (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435375 8p11:F (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435376 8p11:G (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435377 8p11:G (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    435378 8p11:H (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435379 8p11:H (1.9) BS02 WD5 ? GO:0004888 ... P58154 N/A
    435380 8p11:I (1.9) BS01 WD5 ? GO:0004888 ... P58154 N/A
    435381 8p14:A (2.57) BS01 VIS 3.4.19.12 N/A Q96RU2 N/A
    435382 8p1e:D (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    435383 8p1e:E (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    435384 8p1e:I (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    435385 8p1e:J (2.1) BS01 WD2 ? GO:0004888 ... P58154 N/A
    435386 8p1f:A (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    435387 8p1f:E (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    435388 8p1f:G (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    435389 8p1f:H (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    435390 8p1f:I (2.1) BS01 WCW ? GO:0004888 ... P58154 N/A
    435391 8p1h:A (1.95) BS01 AZI ? N/A P36544
    P63104    		 37804592
    435392 8p1i:A (2.97) BS01 WQW ? GO:0005886 ... A0A332Z023 38177534
    435393 8p1i:B (2.97) BS01 WR6 ? GO:0005886 ... A0A332Z023 38177534
    435394 8p1m:A (3.23) BS02 ATP 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    435395 8p1o:A (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    435396 8p1o:B (2.17) BS01 WEW ? N/A Q9NZQ7 38229762
    435397 8p1p:A (2.76) BS01 WF0 3.4.19.12 N/A Q96RU2 N/A
    435398 8p1p:B (2.76) BS01 WF0 3.4.19.12 N/A Q96RU2 N/A
    435399 8p1q:A (2.79) BS01 WFT 3.4.19.12 N/A Q96RU2 N/A
    435400 8p1q:B (2.79) BS01 WFT 3.4.19.12 N/A Q96RU2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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