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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    434001 8onm:B (1.85) BS02 PMP ? GO:0003824 ... D5EHC5 N/A
    434002 8onn:A (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    434003 8onn:B (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    434004 8onn:C (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    434005 8onn:D (2.1) BS01 OCF ? GO:0003824 ... D5EHC5 37548495
    434006 8onv:A (1.01) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37258666
    434007 8onv:A (1.01) BS02 VU6 3.6.5.2 GO:0003924 ... P01116 37258666
    434008 8oo1:A (3.7) BS01 URA ? GO:0005886 ... P0AGM7 39209842
    434009 8oo1:A (3.7) BS02 DMU ? GO:0005886 ... P0AGM7 39209842
    434010 8oo1:A (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    434011 8oo1:C (3.7) BS01 DMU ? GO:0005886 ... P0AGM7 39209842
    434012 8oo1:C (3.7) BS02 URA ? GO:0005886 ... P0AGM7 39209842
    434013 8oo1:C (3.7) BS03 DMU ? GO:0005886 ... P0AGM7 39209842
    434014 8oo2:A (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    434015 8oo2:B (1.85) BS01 AV8 ? GO:0000976 ... V9XTV0 37466921
    434016 8oo5:P (2.25) BS01 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    434017 8oo5:P (2.25) BS02 VUF 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    434018 8oo7:A (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434019 8oo7:B (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434020 8oo7:C (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434021 8oo7:D (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434022 8oo7:E (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434023 8oo7:F (2.8) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434024 8oo7:G (2.8) BS03 ALF N/A GO:0003677 ... N/A 37384673
    434025 8oo7:G (2.8) BS04 ADP N/A GO:0003677 ... N/A 37384673
    434026 8oo7:J (2.8) BS03 ATP ? N/A G0S589 37384673
    434027 8oo8:A (1.4) BS02 VV8 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    434028 8oo9:G (3.2) BS03 ADP N/A GO:0003677 ... N/A 37384673
    434029 8oo9:G (3.2) BS04 ALF N/A GO:0003677 ... N/A 37384673
    434030 8ooc:A (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434031 8ooc:B (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434032 8ooc:C (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434033 8ooc:D (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434034 8ooc:E (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434035 8ooc:F (2.93) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434036 8ooc:J (2.93) BS01 ATP ? N/A G0S589 37384673
    434037 8ood:A (1.497) BS02 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    434038 8ood:A (1.497) BS03 VY3 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    434039 8oof:J (2.9) BS01 ATP ? N/A G0S589 37384673
    434040 8oog:A (1.384) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 37389247
    434041 8oog:A (1.384) BS02 VUO 2.5.1.6 GO:0004478 ... P31153 37389247
    434042 8ooi:A (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434043 8ooi:A (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434044 8ooi:B (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434045 8ooi:B (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434046 8ooi:C (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434047 8ooi:C (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434048 8ooi:D (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434049 8ooi:D (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434050 8ooi:E (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434051 8ooi:E (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434052 8ooi:F (2.61) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 38326645
    434053 8ooi:F (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    434054 8ooj:A (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434055 8ooj:A (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434056 8ooj:B (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434057 8ooj:B (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434058 8ooj:C (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434059 8ooj:C (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434060 8ooj:D (2.1) BS01 UDP 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434061 8ooj:D (2.1) BS02 VVC 2.7.1.113
    2.7.1.74
    2.7.1.76    		 GO:0004136 ... P27707 38064712
    434062 8oom:A (1.82) BS01 PNY ? GO:0016407 ... Q84G21 N/A
    434063 8ooo:A (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    434064 8ooo:A (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434065 8ooo:A (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434066 8ooo:B (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    434067 8ooo:B (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434068 8ooo:B (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434069 8ooo:C (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    434070 8ooo:C (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434071 8ooo:C (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434072 8ooo:D (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    434073 8ooo:D (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434074 8ooo:D (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434075 8ooo:E (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434076 8ooo:E (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    434077 8ooo:E (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434078 8ooo:F (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434079 8ooo:F (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434080 8ooo:F (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    434081 8ooo:G (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434082 8ooo:G (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    434083 8ooo:G (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434084 8ooo:H (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434085 8ooo:H (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434086 8ooo:H (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    434087 8ooo:I (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434088 8ooo:I (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    434089 8ooo:I (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434090 8ooo:J (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434091 8ooo:J (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434092 8ooo:J (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    434093 8ooo:K (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434094 8ooo:K (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    434095 8ooo:K (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434096 8ooo:L (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434097 8ooo:L (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434098 8ooo:L (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    434099 8oop:A (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434100 8oop:B (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434101 8oop:C (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434102 8oop:D (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434103 8oop:E (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434104 8oop:F (2.7) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434105 8oop:G (2.7) BS03 ADP N/A GO:0003677 ... N/A 37384673
    434106 8oop:G (2.7) BS04 ALF N/A GO:0003677 ... N/A 37384673
    434107 8oop:J (2.7) BS02 ATP ? N/A G0S589 37384673
    434108 8ooq:A (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434109 8ooq:A (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434110 8ooq:B (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434111 8ooq:B (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434112 8ooq:C (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434113 8ooq:C (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434114 8ooq:D (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434115 8ooq:D (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434116 8ooq:E (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434117 8ooq:E (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434118 8ooq:F (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434119 8ooq:F (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434120 8ooq:G (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434121 8ooq:G (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434122 8ooq:H (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434123 8ooq:H (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434124 8ooq:I (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434125 8ooq:I (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434126 8ooq:J (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434127 8ooq:J (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434128 8ooq:K (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434129 8ooq:K (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434130 8ooq:L (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434131 8ooq:L (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434132 8ooq:P (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434133 8ooq:P (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434134 8ooq:Q (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434135 8ooq:Q (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434136 8ooq:S (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434137 8ooq:S (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434138 8ooq:T (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434139 8ooq:T (2.91) BS04 AKG N/A GO:0003824 ... N/A 38243071
    434140 8ooq:U (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434141 8ooq:U (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434142 8ooq:V (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434143 8ooq:V (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434144 8ooq:X (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434145 8ooq:X (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434146 8ooq:Y (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434147 8ooq:Y (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434148 8ooq:Z (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434149 8ooq:Z (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434150 8ooq:a (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434151 8ooq:a (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434152 8ooq:b (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434153 8ooq:b (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    434154 8ooq:c (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    434155 8ooq:c (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    434156 8oor:A (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434157 8oor:B (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434158 8oor:C (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYI5 37384673
    434159 8oor:D (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434160 8oor:E (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434161 8oor:F (2.87) BS01 ADP 3.6.4.12 GO:0000492 ... G0RYC2 37384673
    434162 8oor:J (2.87) BS01 ATP ? N/A G0S589 37384673
    434163 8oos:G (3.29) BS03 ADP N/A GO:0003677 ... N/A 37384673
    434164 8oos:G (3.29) BS04 ALF N/A GO:0003677 ... N/A 37384673
    434165 8oot:J (2.85) BS01 ATP ? N/A G0S589 37384673
    434166 8oov:A (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    434167 8oov:B (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    434168 8oov:C (1.7) BS01 PAP 2.7.4.6 GO:0000287 ... P15531 37298313
    434169 8ooz:A (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434170 8ooz:B (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434171 8ooz:C (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434172 8ooz:D (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434173 8ooz:E (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434174 8ooz:F (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434175 8ooz:G (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434176 8ooz:H (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434177 8ooz:I (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434178 8ooz:J (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434179 8ooz:K (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434180 8ooz:K (2.7) BS02 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434181 8ooz:L (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    434182 8op9:A (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    434183 8op9:A (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    434184 8op9:B (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    434185 8op9:B (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    434186 8op9:C (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    434187 8op9:D (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    434188 8op9:E (3.36) BS01 ABU ? GO:0004888 ... P24046 37659407
    434189 8op9:E (3.36) BS02 ABU ? GO:0004888 ... P24046 37659407
    434190 8opm:A (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434191 8opm:A (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434192 8opm:B (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434193 8opm:B (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434194 8opm:C (3.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434195 8opm:C (3.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434196 8opn:A (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434197 8opn:A (4.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434198 8opn:B (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434199 8opn:B (4.7) BS02 5N6 ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    434200 8opn:C (4.7) BS01 SIA ? GO:0003700 ... E0YJ44
    P03069    		 37794193
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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