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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    432201 8jzf:b (2.7) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432202 8jzf:b (2.7) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432203 8jzf:b (2.7) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432204 8jzf:b (2.7) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432205 8jzf:b (2.7) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432206 8jzf:b (2.7) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432207 8jzf:b (2.7) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432208 8jzf:b (2.7) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432209 8jzf:b (2.7) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432210 8jzf:b (2.7) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432211 8jzf:b (2.7) BS34 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432212 8jzf:b (2.7) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432213 8jzf:b (2.7) BS36 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432214 8jzf:b (2.7) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432215 8jzf:b (2.7) BS38 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432216 8jzf:b (2.7) BS39 DD6 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    432217 8jzf:c (2.7) BS01 SF4 1.97.1.12 GO:0009055 ... A0A812FX01 38319970
    432218 8jzf:c (2.7) BS02 SF4 1.97.1.12 GO:0009055 ... A0A812FX01 38319970
    432219 8jzf:f (2.7) BS01 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432220 8jzf:f (2.7) BS02 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432221 8jzf:f (2.7) BS03 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432222 8jzf:f (2.7) BS04 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432223 8jzf:f (2.7) BS05 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432224 8jzf:f (2.7) BS06 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432225 8jzf:f (2.7) BS07 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432226 8jzf:f (2.7) BS08 CLA ? GO:0009522 ... A0A812QHR9 38319970
    432227 8jzf:h (2.7) BS01 CLA ? N/A A0A812Q823 38319970
    432228 8jzf:h (2.7) BS02 CLA ? N/A A0A812Q823 38319970
    432229 8jzf:h (2.7) BS03 UIX ? N/A A0A812Q823 38319970
    432230 8jzf:h (2.7) BS04 CLA ? N/A A0A812Q823 38319970
    432231 8jzf:h (2.7) BS05 DD6 ? N/A A0A812Q823 38319970
    432232 8jzf:h (2.7) BS06 CLA ? N/A A0A812Q823 38319970
    432233 8jzf:h (2.7) BS07 CLA ? N/A A0A812Q823 38319970
    432234 8jzf:i (2.7) BS01 CLA ? GO:0009522 ... A0A812IJ75 38319970
    432235 8jzf:i (2.7) BS02 CLA ? GO:0009522 ... A0A812IJ75 38319970
    432236 8jzf:j (2.7) BS01 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432237 8jzf:j (2.7) BS02 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432238 8jzf:j (2.7) BS03 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432239 8jzf:j (2.7) BS04 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432240 8jzf:j (2.7) BS05 PID ? GO:0009522 ... A0A812LLR4 38319970
    432241 8jzf:j (2.7) BS06 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432242 8jzf:j (2.7) BS07 CLA ? GO:0009522 ... A0A812LLR4 38319970
    432243 8jzf:l (2.7) BS01 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432244 8jzf:l (2.7) BS02 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432245 8jzf:l (2.7) BS03 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432246 8jzf:l (2.7) BS04 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432247 8jzf:l (2.7) BS05 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432248 8jzf:l (2.7) BS06 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432249 8jzf:l (2.7) BS07 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432250 8jzf:l (2.7) BS08 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432251 8jzf:l (2.7) BS09 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432252 8jzf:l (2.7) BS10 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432253 8jzf:l (2.7) BS11 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432254 8jzf:l (2.7) BS12 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432255 8jzf:l (2.7) BS13 CLA ? GO:0009522 ... A0A812S6M2 38319970
    432256 8jzf:l (2.7) BS14 UIX ? GO:0009522 ... A0A812S6M2 38319970
    432257 8jzf:m (2.7) BS01 CLA ? N/A A0A812M556 38319970
    432258 8jzf:m (2.7) BS02 CLA ? N/A A0A812M556 38319970
    432259 8jzg:A (2.39) BS01 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432260 8jzg:A (2.39) BS02 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432261 8jzg:A (2.39) BS03 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432262 8jzg:A (2.39) BS04 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432263 8jzg:A (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432264 8jzg:B (2.39) BS01 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432265 8jzg:B (2.39) BS02 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432266 8jzg:B (2.39) BS03 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432267 8jzg:B (2.39) BS04 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432268 8jzg:B (2.39) BS05 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432269 8jzg:C (2.39) BS01 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432270 8jzg:C (2.39) BS02 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432271 8jzg:C (2.39) BS03 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432272 8jzg:C (2.39) BS04 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432273 8jzg:C (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432274 8jzg:D (2.39) BS01 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432275 8jzg:D (2.39) BS02 POP 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432276 8jzg:D (2.39) BS03 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432277 8jzg:D (2.39) BS04 ADN 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432278 8jzg:D (2.39) BS05 3PO 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432279 8jzg:D (2.39) BS06 SAM 2.5.1.6 GO:0000287 ... Q9K5E4 37846083
    432280 8jzk:A (2.55004) BS01 GSH 2.5.1.18 GO:0004364 ... A0A5N5L538 N/A
    432281 8jzn:A (2.47) BS01 AV0 2.4.1.34 GO:0000148 ... P38631 37703377
    432282 8jzn:A (2.47) BS02 AV0 2.4.1.34 GO:0000148 ... P38631 37703377
    432283 8jzn:A (2.47) BS03 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432284 8jzn:A (2.47) BS04 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432285 8jzn:A (2.47) BS05 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432286 8jzn:A (2.47) BS06 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432287 8jzn:A (2.47) BS07 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432288 8jzn:A (2.47) BS08 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432289 8jzn:A (2.47) BS09 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432290 8jzn:A (2.47) BS10 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432291 8jzn:A (2.47) BS11 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432292 8jzn:A (2.47) BS12 ERG 2.4.1.34 GO:0000148 ... P38631 37703377
    432293 8jzs:A (2.95) BS01 CLR ? GO:0005290 ... Q8N697 37863913
    432294 8jzs:A (2.95) BS02 CLR ? GO:0005290 ... Q8N697 37863913
    432295 8jzs:A (2.95) BS03 CLR ? GO:0005290 ... Q8N697 37863913
    432296 8jzs:B (2.95) BS01 CLR ? GO:0005290 ... Q8N697 37863913
    432297 8jzs:B (2.95) BS02 CLR ? GO:0005290 ... Q8N697 37863913
    432298 8jzs:B (2.95) BS03 CLR ? GO:0005290 ... Q8N697 37863913
    432299 8jzx:A (2.5) BS01 CLR ? GO:0005290 ... Q8N697 37863876
    432300 8jzx:A (2.5) BS02 Q09 ? GO:0005290 ... Q8N697 37863876
    432301 8jzx:A (2.5) BS03 CLR ? GO:0005290 ... Q8N697 37863876
    432302 8jzx:A (2.5) BS04 CLR ? GO:0005290 ... Q8N697 37863876
    432303 8jzx:A (2.5) BS05 CLR ? GO:0005290 ... Q8N697 37863876
    432304 8jzx:B (2.5) BS01 CLR ? GO:0005290 ... Q8N697 37863876
    432305 8jzx:B (2.5) BS02 CLR ? GO:0005290 ... Q8N697 37863876
    432306 8jzx:B (2.5) BS03 CLR ? GO:0005290 ... Q8N697 37863876
    432307 8jzx:B (2.5) BS04 Q09 ? GO:0005290 ... Q8N697 37863876
    432308 8k06:A (1.845) BS01 PSU 4.2.1.70 GO:0001522 ... Q84K35 38117089
    432309 8k06:B (1.845) BS01 RP5 4.2.1.70 GO:0001522 ... Q84K35 38117089
    432310 8k06:C (1.845) BS01 PSU 4.2.1.70 GO:0001522 ... Q84K35 38117089
    432311 8k0m:A (3.17) BS02 AKG N/A N/A Q32P28 39245686
    432312 8k14:A (1.28) BS01 VFI ? N/A O60885 37992518
    432313 8k16:A (3.1) BS01 ATP ? GO:0005515 ... O32080 38719864
    432314 8k16:B (3.1) BS01 ATP ? GO:0005515 ... O32080 38719864
    432315 8k1h:A (2.1) BS02 NAD 1.1.1.6 GO:0000166 ... A6TGD6 N/A
    432316 8k1j:A (3.0) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432317 8k1j:B (3.0) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432318 8k1j:B (3.0) BS06 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432319 8k1j:B (3.0) BS07 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432320 8k1k:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    432321 8k1k:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    432322 8k1l:A (3.44) BS01 ALF 7.2.2.13 GO:0000166 ... P17326 38079564
    432323 8k1n:C (3.0) BS01 RFP N/A GO:0005886 ... O05318 N/A
    432324 8k1o:B (2.9) BS01 ANP N/A GO:0005524 ... O86311 N/A
    432325 8k1o:B (2.9) BS02 ANP N/A GO:0005524 ... O86311 N/A
    432326 8k1o:C (2.9) BS01 ANP N/A GO:0005524 ... O86311 N/A
    432327 8k1o:C (2.9) BS02 ANP N/A GO:0005524 ... O86311 N/A
    432328 8k1p:B (3.4) BS01 ADP N/A GO:0005524 ... O86311 N/A
    432329 8k1p:B (3.4) BS02 ATP N/A GO:0005524 ... O86311 N/A
    432330 8k1p:C (3.4) BS01 ATP N/A GO:0005524 ... O86311 N/A
    432331 8k1q:A (3.68) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432332 8k1q:A (3.68) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432333 8k1q:A (3.68) BS03 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432334 8k1q:B (3.68) BS03 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432335 8k1q:B (3.68) BS04 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432336 8k1q:B (3.68) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432337 8k1s:A (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432338 8k1s:B (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432339 8k1s:C (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432340 8k1s:D (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432341 8k1s:E (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432342 8k1s:F (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432343 8k1s:G (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432344 8k1s:H (2.83) BS01 ADP ? GO:0005515 ... O32080 38719864
    432345 8k1t:A (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432346 8k1t:B (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432347 8k1t:C (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432348 8k1t:D (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432349 8k1t:E (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432350 8k1t:F (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432351 8k1t:G (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432352 8k1t:H (2.48) BS01 ATP ? GO:0005515 ... O32080 38719864
    432353 8k1u:A (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432354 8k1u:B (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432355 8k1u:C (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432356 8k1u:D (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432357 8k1u:E (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432358 8k1u:F (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432359 8k1u:G (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432360 8k1u:H (2.82) BS01 ATP ? GO:0005515 ... O32080 38719864
    432361 8k1v:A (3.48) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432362 8k1v:A (3.48) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432363 8k1v:B (3.48) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432364 8k1y:A (2.15) BS01 VAL N/A GO:0003677 ... P02768 N/A
    432365 8k1z:A (3.41) BS01 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432366 8k1z:A (3.41) BS02 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432367 8k1z:B (3.41) BS04 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432368 8k1z:B (3.41) BS05 Y01 ? GO:0005267 ... Q9NPC2 38630723
    432369 8k2a:Se (2.9) BS02 GDP N/A GO:0003723 ... P51398 38942792
    432370 8k2b:v (3.4) BS01 PNS N/A GO:0000266 ... L0R8F8 38942792
    432371 8k2c:Lo (2.4) BS04 T1C N/A GO:0002181 ... P83881 38942792
    432372 8k2c:SF (2.4) BS03 T1C N/A GO:0000028 ... P46782 38942792
    432373 8k2d:CD (3.2) BS03 GDP N/A GO:0003746 ... P32324 38942792
    432374 8k2d:Lj (3.2) BS03 T1C N/A GO:0000448 ... P49166 38942792
    432375 8k2e:A (1.6) BS01 VIM N/A N/A Q96MU7 N/A
    432376 8k2e:B (1.6) BS01 VIM N/A N/A Q96MU7 N/A
    432377 8k2h:A (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    432378 8k2h:B (2.2) BS01 GNL ? GO:0003674 ... Q7Y231 38730244
    432379 8k2i:A (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    432380 8k2i:B (2.5) BS01 NGT ? GO:0003674 ... Q7Y231 38730244
    432381 8k2k:A (1.75) BS01 GNL N/A N/A N/A 38730244
    432382 8k2m:A (1.65) BS01 GNL N/A N/A N/A 38730244
    432383 8k2v:A (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432384 8k2v:B (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432385 8k2v:C (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432386 8k2v:D (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432387 8k2v:E (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432388 8k2v:F (3.52) BS01 BTI N/A GO:0002169 ... Q96RQ3 N/A
    432389 8k2v:G (3.52) BS01 BTI N/A GO:0002169 ... Q9HCC0 N/A
    432390 8k2v:G (3.52) BS02 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432391 8k2v:H (3.52) BS01 BTI N/A GO:0002169 ... Q9HCC0 N/A
    432392 8k2v:H (3.52) BS02 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432393 8k2v:I (3.52) BS01 BTI N/A GO:0002169 ... Q9HCC0 N/A
    432394 8k2v:I (3.52) BS02 BTI N/A GO:0002169 ... Q9HCC0 N/A
    432395 8k2v:I (3.52) BS03 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432396 8k2v:J (3.52) BS01 BTI N/A GO:0002169 ... Q9HCC0 N/A
    432397 8k2v:J (3.52) BS02 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432398 8k2v:K (3.52) BS01 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432399 8k2v:L (3.52) BS01 ACO N/A GO:0002169 ... Q9HCC0 N/A
    432400 8k2w:R (3.0) BS01 CLR ? GO:0002685 ... P0ABE7
    P41145
    P49682    		 38012179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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