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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    431801 8jze:O (2.99) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    431802 8jze:O (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431803 8jze:P (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431804 8jze:P (2.99) BS02 PID N/A GO:0009765 ... N/A 38319970
    431805 8jze:P (2.99) BS03 PID N/A GO:0009765 ... N/A 38319970
    431806 8jze:P (2.99) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431807 8jze:P (2.99) BS05 PID N/A GO:0009765 ... N/A 38319970
    431808 8jze:P (2.99) BS06 PID N/A GO:0009765 ... N/A 38319970
    431809 8jze:P (2.99) BS07 UIX N/A GO:0009765 ... N/A 38319970
    431810 8jze:P (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431811 8jze:P (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431812 8jze:P (2.99) BS10 KC1 N/A GO:0009765 ... N/A 38319970
    431813 8jze:P (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431814 8jze:P (2.99) BS12 KC1 N/A GO:0009765 ... N/A 38319970
    431815 8jze:P (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431816 8jze:P (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    431817 8jze:P (2.99) BS15 KC1 N/A GO:0009765 ... N/A 38319970
    431818 8jze:P (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431819 8jze:a (2.99) BS01 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431820 8jze:a (2.99) BS02 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431821 8jze:a (2.99) BS03 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431822 8jze:a (2.99) BS04 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431823 8jze:a (2.99) BS05 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431824 8jze:a (2.99) BS06 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431825 8jze:a (2.99) BS07 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431826 8jze:a (2.99) BS08 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431827 8jze:a (2.99) BS09 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431828 8jze:a (2.99) BS10 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431829 8jze:a (2.99) BS11 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431830 8jze:a (2.99) BS12 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431831 8jze:a (2.99) BS13 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431832 8jze:a (2.99) BS14 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431833 8jze:a (2.99) BS15 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431834 8jze:a (2.99) BS16 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431835 8jze:a (2.99) BS17 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431836 8jze:a (2.99) BS18 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431837 8jze:a (2.99) BS19 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431838 8jze:a (2.99) BS20 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431839 8jze:a (2.99) BS21 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431840 8jze:a (2.99) BS22 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431841 8jze:a (2.99) BS23 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431842 8jze:a (2.99) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431843 8jze:a (2.99) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431844 8jze:a (2.99) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431845 8jze:a (2.99) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431846 8jze:a (2.99) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431847 8jze:a (2.99) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431848 8jze:a (2.99) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431849 8jze:a (2.99) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431850 8jze:a (2.99) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431851 8jze:a (2.99) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431852 8jze:a (2.99) BS34 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431853 8jze:a (2.99) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431854 8jze:a (2.99) BS36 SF4 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431855 8jze:a (2.99) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431856 8jze:a (2.99) BS38 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431857 8jze:a (2.99) BS39 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431858 8jze:a (2.99) BS40 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431859 8jze:a (2.99) BS41 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431860 8jze:a (2.99) BS42 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    431861 8jze:b (2.99) BS01 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431862 8jze:b (2.99) BS02 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431863 8jze:b (2.99) BS03 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431864 8jze:b (2.99) BS04 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431865 8jze:b (2.99) BS05 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431866 8jze:b (2.99) BS06 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431867 8jze:b (2.99) BS07 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431868 8jze:b (2.99) BS08 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431869 8jze:b (2.99) BS09 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431870 8jze:b (2.99) BS10 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431871 8jze:b (2.99) BS11 SF4 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431872 8jze:b (2.99) BS12 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431873 8jze:b (2.99) BS13 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431874 8jze:b (2.99) BS14 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431875 8jze:b (2.99) BS15 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431876 8jze:b (2.99) BS16 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431877 8jze:b (2.99) BS17 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431878 8jze:b (2.99) BS18 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431879 8jze:b (2.99) BS19 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431880 8jze:b (2.99) BS20 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431881 8jze:b (2.99) BS21 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431882 8jze:b (2.99) BS22 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431883 8jze:b (2.99) BS23 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431884 8jze:b (2.99) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431885 8jze:b (2.99) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431886 8jze:b (2.99) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431887 8jze:b (2.99) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431888 8jze:b (2.99) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431889 8jze:b (2.99) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431890 8jze:b (2.99) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431891 8jze:b (2.99) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431892 8jze:b (2.99) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431893 8jze:b (2.99) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431894 8jze:b (2.99) BS34 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431895 8jze:b (2.99) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431896 8jze:b (2.99) BS36 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431897 8jze:b (2.99) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431898 8jze:b (2.99) BS38 PQN 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431899 8jze:b (2.99) BS39 DD6 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    431900 8jze:c (2.99) BS01 SF4 1.97.1.12 GO:0009055 ... A0A812FX01 38319970
    431901 8jze:c (2.99) BS02 SF4 1.97.1.12 GO:0009055 ... A0A812FX01 38319970
    431902 8jze:f (2.99) BS01 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431903 8jze:f (2.99) BS02 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431904 8jze:f (2.99) BS03 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431905 8jze:f (2.99) BS04 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431906 8jze:f (2.99) BS05 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431907 8jze:f (2.99) BS06 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431908 8jze:f (2.99) BS07 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431909 8jze:f (2.99) BS08 CLA ? GO:0009522 ... A0A812QHR9 38319970
    431910 8jze:h (2.99) BS01 CLA ? N/A A0A812Q823 38319970
    431911 8jze:h (2.99) BS02 CLA ? N/A A0A812Q823 38319970
    431912 8jze:h (2.99) BS03 UIX ? N/A A0A812Q823 38319970
    431913 8jze:h (2.99) BS04 CLA ? N/A A0A812Q823 38319970
    431914 8jze:h (2.99) BS05 DD6 ? N/A A0A812Q823 38319970
    431915 8jze:h (2.99) BS06 CLA ? N/A A0A812Q823 38319970
    431916 8jze:h (2.99) BS07 CLA ? N/A A0A812Q823 38319970
    431917 8jze:i (2.99) BS01 CLA ? GO:0009522 ... A0A812IJ75 38319970
    431918 8jze:i (2.99) BS02 CLA ? GO:0009522 ... A0A812IJ75 38319970
    431919 8jze:j (2.99) BS01 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431920 8jze:j (2.99) BS02 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431921 8jze:j (2.99) BS03 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431922 8jze:j (2.99) BS04 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431923 8jze:j (2.99) BS05 PID ? GO:0009522 ... A0A812LLR4 38319970
    431924 8jze:j (2.99) BS06 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431925 8jze:j (2.99) BS07 CLA ? GO:0009522 ... A0A812LLR4 38319970
    431926 8jze:l (2.99) BS01 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431927 8jze:l (2.99) BS02 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431928 8jze:l (2.99) BS03 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431929 8jze:l (2.99) BS04 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431930 8jze:l (2.99) BS05 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431931 8jze:l (2.99) BS06 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431932 8jze:l (2.99) BS07 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431933 8jze:l (2.99) BS08 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431934 8jze:l (2.99) BS09 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431935 8jze:l (2.99) BS10 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431936 8jze:l (2.99) BS11 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431937 8jze:l (2.99) BS12 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431938 8jze:l (2.99) BS13 CLA ? GO:0009522 ... A0A812S6M2 38319970
    431939 8jze:l (2.99) BS14 UIX ? GO:0009522 ... A0A812S6M2 38319970
    431940 8jze:m (2.99) BS01 CLA ? N/A A0A812M556 38319970
    431941 8jze:m (2.99) BS02 CLA ? N/A A0A812M556 38319970
    431942 8jzf:A (2.7) BS01 DD6 N/A GO:0009765 ... N/A 38319970
    431943 8jzf:A (2.7) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431944 8jzf:A (2.7) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431945 8jzf:A (2.7) BS04 UIX N/A GO:0009765 ... N/A 38319970
    431946 8jzf:A (2.7) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431947 8jzf:A (2.7) BS06 KC1 N/A GO:0009765 ... N/A 38319970
    431948 8jzf:A (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431949 8jzf:A (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431950 8jzf:A (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431951 8jzf:A (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431952 8jzf:A (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431953 8jzf:A (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431954 8jzf:A (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431955 8jzf:A (2.7) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431956 8jzf:A (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431957 8jzf:A (2.7) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431958 8jzf:A (2.7) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431959 8jzf:A (2.7) BS18 CLA N/A GO:0009765 ... N/A 38319970
    431960 8jzf:B (2.7) BS01 CLA N/A GO:0009765 ... N/A 38319970
    431961 8jzf:B (2.7) BS02 CLA N/A GO:0009765 ... N/A 38319970
    431962 8jzf:B (2.7) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431963 8jzf:B (2.7) BS04 DD6 N/A GO:0009765 ... N/A 38319970
    431964 8jzf:B (2.7) BS05 DD6 N/A GO:0009765 ... N/A 38319970
    431965 8jzf:B (2.7) BS06 UIX N/A GO:0009765 ... N/A 38319970
    431966 8jzf:B (2.7) BS07 DD6 N/A GO:0009765 ... N/A 38319970
    431967 8jzf:B (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431968 8jzf:B (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    431969 8jzf:B (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431970 8jzf:B (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431971 8jzf:B (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431972 8jzf:B (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431973 8jzf:B (2.7) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431974 8jzf:B (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431975 8jzf:B (2.7) BS16 CLA N/A GO:0009765 ... N/A 38319970
    431976 8jzf:B (2.7) BS17 CLA N/A GO:0009765 ... N/A 38319970
    431977 8jzf:D (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    431978 8jzf:D (2.7) BS02 PID N/A GO:0009765 ... N/A 38319970
    431979 8jzf:D (2.7) BS03 DD6 N/A GO:0009765 ... N/A 38319970
    431980 8jzf:D (2.7) BS04 PID N/A GO:0009765 ... N/A 38319970
    431981 8jzf:D (2.7) BS05 PID N/A GO:0009765 ... N/A 38319970
    431982 8jzf:D (2.7) BS06 PID N/A GO:0009765 ... N/A 38319970
    431983 8jzf:D (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431984 8jzf:D (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    431985 8jzf:D (2.7) BS09 KC1 N/A GO:0009765 ... N/A 38319970
    431986 8jzf:D (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    431987 8jzf:D (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    431988 8jzf:D (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    431989 8jzf:D (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    431990 8jzf:D (2.7) BS14 KC1 N/A GO:0009765 ... N/A 38319970
    431991 8jzf:D (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    431992 8jzf:F (2.7) BS01 PID N/A GO:0009765 ... N/A 38319970
    431993 8jzf:F (2.7) BS02 DD6 N/A GO:0009765 ... N/A 38319970
    431994 8jzf:F (2.7) BS03 PID N/A GO:0009765 ... N/A 38319970
    431995 8jzf:F (2.7) BS04 PID N/A GO:0009765 ... N/A 38319970
    431996 8jzf:F (2.7) BS05 PID N/A GO:0009765 ... N/A 38319970
    431997 8jzf:F (2.7) BS06 CLA N/A GO:0009765 ... N/A 38319970
    431998 8jzf:F (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    431999 8jzf:F (2.7) BS08 KC1 N/A GO:0009765 ... N/A 38319970
    432000 8jzf:F (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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