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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    430001 8jhf:F (3.68) BS03 SAM ? GO:0003677 ... P62805 38052811
    430002 8jhf:K (3.68) BS02 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    430003 8jhg:K (3.58) BS01 SAM 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 38052811
    430004 8jhl:A (2.10004) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37534597
    430005 8jhl:A (2.10004) BS02 DNU 3.6.5.2 GO:0003924 ... P01116 37534597
    430006 8jhn:D (3.75) BS01 UR9 ? GO:0001781 ... P08173
    Q8TDS4    		 38431681
    430007 8jhq:A (3.6) BS01 S1P ? GO:0022857 ... Q8IVW8
    Q9V2J8    		 38123824
    430008 8jhy:A (2.87) BS01 IX8 ? GO:0001781 ... Q8TDS4 37597514
    430009 8jhy:A (2.87) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    430010 8ji2:A (1.75) BS02 67I ? GO:0046872 ... A0A861B387 37973794
    430011 8ji2:B (1.75) BS02 67I ? GO:0046872 ... A0A861B387 37973794
    430012 8ji3:A (1.78) BS03 67I ? GO:0046872 ... A0A861B387 37973794
    430013 8ji3:B (1.78) BS03 67I ? GO:0046872 ... A0A861B387 37973794
    430014 8ji4:A (1.67) BS02 64X ? GO:0046872 ... A0A861B387 37973794
    430015 8ji4:B (1.67) BS02 64X ? GO:0046872 ... A0A861B387 37973794
    430016 8ji5:A (2.01) BS03 64X ? GO:0046872 ... A0A861B387 37973794
    430017 8ji5:B (2.01) BS03 64X ? GO:0046872 ... A0A861B387 37973794
    430018 8ji6:A (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    430019 8ji6:B (1.9) BS02 TRP ? GO:0046872 ... A0A861B387 37973794
    430020 8ji7:A (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    430021 8ji7:B (1.61) BS03 TRP ? GO:0046872 ... A0A861B387 37973794
    430022 8jia:A (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    430023 8jia:B (3.9) BS01 ATP ? GO:0000287 ... O05779 38044344
    430024 8jig:A (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    430025 8jig:B (2.4) BS01 8JA 2.3.2.27 N/A Q96T88 N/A
    430026 8jii:A (3.17) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    430027 8jii:A (3.17) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    430028 8jii:A (3.17) BS03 IX8 ? GO:0001781 ... Q8TDS4 37597514
    430029 8jij:A (2.5) BS01 PLP ? N/A A0A4S4ESS1 N/A
    430030 8jik:A (2.6) BS01 PLP ? N/A A0A4S4ESS1 N/A
    430031 8jil:A (3.5) BS01 NIO ? GO:0001781 ... Q8TDS4 37597514
    430032 8jil:A (3.5) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    430033 8jim:E (2.98) BS01 AW9 ? GO:0001781 ... Q8TDS4 37597514
    430034 8jip:R (2.85) BS02 D6M ? GO:0004888 ... P43220 37549266
    430035 8jir:R (2.57) BS02 D6M ? GO:0004888 ... P43220 37549266
    430036 8jit:R (2.91) BS02 D6M ? GO:0004888 ... P47871 37549266
    430037 8jiu:R (2.76) BS02 D6M ? GO:0004888 ... P47871 37549266
    430038 8jj8:F (3.2) BS01 H98 ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    430039 8jjb:A (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    430040 8jjb:B (2.68) BS01 USI ? GO:0000226 ... P02554 38430854
    430041 8jjb:B (2.68) BS02 GDP ? GO:0000226 ... P02554 38430854
    430042 8jjb:C (2.68) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    430043 8jjb:D (2.68) BS02 GTP ? GO:0000226 ... P02554 38430854
    430044 8jjb:D (2.68) BS03 USI ? GO:0000226 ... P02554 38430854
    430045 8jjb:F (2.68) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    430046 8jjc:A (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    430047 8jjc:B (2.76) BS01 UPO ? GO:0000226 ... P02554 38430854
    430048 8jjc:B (2.76) BS02 GDP ? GO:0000226 ... P02554 38430854
    430049 8jjc:C (2.76) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 38430854
    430050 8jjc:D (2.76) BS01 GTP ? GO:0000226 ... P02554 38430854
    430051 8jjc:F (2.76) BS01 ACP 6.3.2.25 GO:0036211 ... A0A8V0Z8P0 38430854
    430052 8jjk:A (1.7) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    430053 8jjl:A (3.2) BS01 DZQ ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    430054 8jjn:A (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    430055 8jjn:B (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    430056 8jjn:C (1.98) BS01 UPG N/A GO:0016757 ... N/A N/A
    430057 8jjo:F (3.4) BS01 JTZ ? GO:0004930 ... P07550
    P0ABE7    		 37580554
    430058 8jjp:A (2.9) BS02 CLR N/A N/A P46091 N/A
    430059 8jjq:A (1.64) BS01 UD2 N/A GO:0016757 ... N/A N/A
    430060 8jjq:B (1.64) BS01 UD2 N/A GO:0016757 ... N/A N/A
    430061 8jjq:C (1.64) BS01 UD2 N/A GO:0016757 ... N/A N/A
    430062 8jjr:A (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430063 8jjr:A (2.8) BS02 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430064 8jjr:A (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430065 8jjr:A (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430066 8jjr:A (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430067 8jjr:A (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430068 8jjr:A (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430069 8jjr:A (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36I308 38493166
    430070 8jjr:A (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430071 8jjr:A (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430072 8jjr:A (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430073 8jjr:A (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430074 8jjr:A (2.8) BS13 UIX N/A GO:0009765 ... A0AA36I308 38493166
    430075 8jjr:A (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    430076 8jjr:A (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    430077 8jjr:A (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I308 38493166
    430078 8jjr:A (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I308 38493166
    430079 8jjr:A (2.8) BS18 CLA N/A GO:0009765 ... A0AA36I308 38493166
    430080 8jjr:B (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430081 8jjr:B (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    430082 8jjr:B (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430083 8jjr:B (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430084 8jjr:B (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430085 8jjr:B (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430086 8jjr:B (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430087 8jjr:B (2.8) BS08 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    430088 8jjr:B (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430089 8jjr:B (2.8) BS10 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430090 8jjr:B (2.8) BS11 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    430091 8jjr:B (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430092 8jjr:B (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430093 8jjr:B (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430094 8jjr:B (2.8) BS15 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430095 8jjr:B (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430096 8jjr:B (2.8) BS17 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430097 8jjr:C (2.8) BS01 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430098 8jjr:C (2.8) BS02 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430099 8jjr:C (2.8) BS03 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430100 8jjr:C (2.8) BS04 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430101 8jjr:C (2.8) BS05 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430102 8jjr:C (2.8) BS06 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430103 8jjr:C (2.8) BS07 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430104 8jjr:C (2.8) BS08 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430105 8jjr:C (2.8) BS09 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430106 8jjr:C (2.8) BS10 KC2 N/A GO:0009765 ... A0AA36MZ23 38493166
    430107 8jjr:C (2.8) BS11 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430108 8jjr:C (2.8) BS12 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430109 8jjr:C (2.8) BS13 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    430110 8jjr:C (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430111 8jjr:C (2.8) BS15 UIX N/A GO:0009765 ... A0AA36MZ23 38493166
    430112 8jjr:C (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430113 8jjr:C (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36MZ23 38493166
    430114 8jjr:C (2.8) BS18 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430115 8jjr:C (2.8) BS19 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    430116 8jjr:D (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430117 8jjr:D (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430118 8jjr:D (2.8) BS03 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430119 8jjr:D (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430120 8jjr:D (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430121 8jjr:D (2.8) BS06 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430122 8jjr:D (2.8) BS07 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430123 8jjr:D (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430124 8jjr:D (2.8) BS09 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430125 8jjr:D (2.8) BS10 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430126 8jjr:D (2.8) BS11 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430127 8jjr:D (2.8) BS12 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430128 8jjr:D (2.8) BS13 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    430129 8jjr:D (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    430130 8jjr:D (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    430131 8jjr:D (2.8) BS16 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    430132 8jjr:D (2.8) BS17 UIX N/A GO:0009765 ... A0AA36JNS8 38493166
    430133 8jjr:D (2.8) BS18 DD6 N/A GO:0009765 ... A0AA36JNS8 38493166
    430134 8jjr:E (2.8) BS01 CLA N/A GO:0009765 ... N/A 38493166
    430135 8jjr:E (2.8) BS02 DD6 N/A GO:0009765 ... N/A 38493166
    430136 8jjr:E (2.8) BS03 DD6 N/A GO:0009765 ... N/A 38493166
    430137 8jjr:E (2.8) BS04 KC2 N/A GO:0009765 ... N/A 38493166
    430138 8jjr:E (2.8) BS05 CLA N/A GO:0009765 ... N/A 38493166
    430139 8jjr:E (2.8) BS06 CLA N/A GO:0009765 ... N/A 38493166
    430140 8jjr:E (2.8) BS07 CLA N/A GO:0009765 ... N/A 38493166
    430141 8jjr:E (2.8) BS08 CLA N/A GO:0009765 ... N/A 38493166
    430142 8jjr:E (2.8) BS09 CLA N/A GO:0009765 ... N/A 38493166
    430143 8jjr:E (2.8) BS10 CLA N/A GO:0009765 ... N/A 38493166
    430144 8jjr:E (2.8) BS11 CLA N/A GO:0009765 ... N/A 38493166
    430145 8jjr:E (2.8) BS12 CLA N/A GO:0009765 ... N/A 38493166
    430146 8jjr:E (2.8) BS13 KC2 N/A GO:0009765 ... N/A 38493166
    430147 8jjr:E (2.8) BS14 CLA N/A GO:0009765 ... N/A 38493166
    430148 8jjr:E (2.8) BS15 CLA N/A GO:0009765 ... N/A 38493166
    430149 8jjr:E (2.8) BS16 DD6 N/A GO:0009765 ... N/A 38493166
    430150 8jjr:E (2.8) BS17 DD6 N/A GO:0009765 ... N/A 38493166
    430151 8jjr:E (2.8) BS18 DD6 N/A GO:0009765 ... N/A 38493166
    430152 8jjr:E (2.8) BS19 UIX N/A GO:0009765 ... N/A 38493166
    430153 8jjr:E (2.8) BS20 DD6 N/A GO:0009765 ... N/A 38493166
    430154 8jjr:F (2.8) BS01 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430155 8jjr:F (2.8) BS02 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430156 8jjr:F (2.8) BS03 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430157 8jjr:F (2.8) BS04 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430158 8jjr:F (2.8) BS05 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430159 8jjr:F (2.8) BS06 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430160 8jjr:F (2.8) BS07 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430161 8jjr:F (2.8) BS08 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430162 8jjr:F (2.8) BS09 KC2 N/A GO:0009765 ... A0AA36INW6 38493166
    430163 8jjr:F (2.8) BS10 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430164 8jjr:F (2.8) BS11 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    430165 8jjr:F (2.8) BS12 DD6 N/A GO:0009765 ... A0AA36INW6 38493166
    430166 8jjr:F (2.8) BS13 PID N/A GO:0009765 ... A0AA36INW6 38493166
    430167 8jjr:F (2.8) BS14 PID N/A GO:0009765 ... A0AA36INW6 38493166
    430168 8jjr:F (2.8) BS15 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430169 8jjr:F (2.8) BS16 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    430170 8jjr:G (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430171 8jjr:G (2.8) BS02 KC2 N/A GO:0009765 ... A0AA36I3A4 38493166
    430172 8jjr:G (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430173 8jjr:G (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430174 8jjr:G (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430175 8jjr:G (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430176 8jjr:G (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430177 8jjr:G (2.8) BS08 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430178 8jjr:G (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430179 8jjr:G (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430180 8jjr:G (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430181 8jjr:G (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    430182 8jjr:G (2.8) BS13 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    430183 8jjr:G (2.8) BS14 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    430184 8jjr:G (2.8) BS15 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    430185 8jjr:G (2.8) BS16 UIX N/A GO:0009765 ... A0AA36I3A4 38493166
    430186 8jjr:G (2.8) BS17 DD6 N/A GO:0009765 ... A0AA36I3A4 38493166
    430187 8jjr:H (2.8) BS01 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430188 8jjr:H (2.8) BS02 DD6 N/A GO:0009765 ... A0AA36NGX7 38493166
    430189 8jjr:H (2.8) BS03 KC2 N/A GO:0009765 ... A0AA36NGX7 38493166
    430190 8jjr:H (2.8) BS04 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430191 8jjr:H (2.8) BS05 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430192 8jjr:H (2.8) BS06 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430193 8jjr:H (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430194 8jjr:H (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430195 8jjr:H (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430196 8jjr:H (2.8) BS10 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430197 8jjr:H (2.8) BS11 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430198 8jjr:H (2.8) BS12 KC2 N/A GO:0009765 ... A0AA36NGX7 38493166
    430199 8jjr:H (2.8) BS13 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    430200 8jjr:H (2.8) BS14 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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