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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    426601 8ixe:H (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426602 8ixe:J (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426603 8ixe:K (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426604 8ixe:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426605 8ixe:W (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426606 8ixe:Z (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426607 8ixe:a (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426608 8ixe:h (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426609 8ixe:l (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426610 8ixe:p (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426611 8ixe:q (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426612 8ixf:A (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426613 8ixf:B (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426614 8ixf:C (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426615 8ixf:D (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426616 8ixf:E (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426617 8ixf:F (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426618 8ixf:G (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426619 8ixf:H (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426620 8ixf:I (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426621 8ixf:J (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426622 8ixf:K (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426623 8ixf:L (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426624 8ixf:M (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426625 8ixf:N (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426626 8ixf:O (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426627 8ixf:P (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426628 8ixf:Q (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426629 8ixf:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426630 8ixf:S (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426631 8ixf:T (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426632 8ixf:U (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426633 8ixf:V (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426634 8ixf:W (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426635 8ixf:X (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426636 8ixf:Y (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426637 8ixf:Z (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426638 8ixf:a (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426639 8ixg:B (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426640 8ixg:H (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426641 8ixg:J (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426642 8ixg:K (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68368 37439022
    426643 8ixg:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426644 8ixg:W (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426645 8ixg:Z (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426646 8ixg:a (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426647 8ixg:h (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426648 8ixg:l (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426649 8ixg:p (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426650 8ixg:q (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426651 8ixh:A (1.95) BS01 1QQ 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426652 8ixh:B (1.95) BS01 1QQ 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426653 8ixh:C (1.95) BS01 1QQ 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426654 8ixm:A (1.96) BS01 NAP 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426655 8ixm:A (1.96) BS02 COI 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426656 8ixm:B (1.96) BS01 NAP 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426657 8ixm:B (1.96) BS02 COI 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426658 8ixq:B (2.1) BS01 LW8 ? GO:0016757 ... A9Y8T1 N/A
    426659 8ixq:B (2.1) BS02 GDP ? GO:0016757 ... A9Y8T1 N/A
    426660 8ixq:D (2.1) BS01 GDP ? GO:0016757 ... A9Y8T1 N/A
    426661 8ixq:D (2.1) BS02 LW8 ? GO:0016757 ... A9Y8T1 N/A
    426662 8ixs:A (1.48) BS01 T6I ? N/A Q14145 37197451
    426663 8ixt:A (1.2) BS01 B12 ? GO:0005576 ... Q9R0D6 38636663
    426664 8ixt:A (1.2) BS02 GSH ? GO:0005576 ... Q9R0D6 38636663
    426665 8ixu:A (1.3) BS01 B12 ? GO:0005576 ... Q9R0D6 38636663
    426666 8ixv:A (1.72) BS01 RZO ? N/A O00481 37674084
    426667 8ixw:A (1.8) BS01 SEY ? N/A A0A1Y9SHR5 N/A
    426668 8ixw:A (1.8) BS02 SEY ? N/A A0A1Y9SHR5 N/A
    426669 8ixw:A (1.8) BS03 SEY ? N/A A0A1Y9SHR5 N/A
    426670 8ixw:B (1.8) BS01 SEY ? N/A A0A1Y9SHR5 N/A
    426671 8ixx:A (1.7) BS01 1RG 3.5.2.6 GO:0008800 ... Q01166 N/A
    426672 8ixz:A (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426673 8ixz:B (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426674 8ixz:C (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426675 8ixz:D (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426676 8ixz:E (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426677 8ixz:F (2.33) BS01 4UR ? N/A Q6PVL0 38103556
    426678 8iy0:A (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426679 8iy0:B (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426680 8iy0:C (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426681 8iy0:D (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426682 8iy0:E (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426683 8iy0:F (2.26) BS01 3AM ? N/A Q6PVL0 38103556
    426684 8iy1:A (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426685 8iy1:B (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426686 8iy1:C (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426687 8iy1:D (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426688 8iy1:E (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426689 8iy1:F (2.1) BS01 3AM ? N/A Q6PVL0 38103556
    426690 8iy2:A (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    426691 8iy2:A (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    426692 8iy2:A (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426693 8iy2:B (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    426694 8iy2:B (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    426695 8iy2:B (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426696 8iy2:C (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    426697 8iy2:C (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    426698 8iy2:C (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426699 8iy2:D (2.76) BS01 3GP ? N/A Q6PVL0 38103556
    426700 8iy2:D (2.76) BS02 3AM ? N/A Q6PVL0 38103556
    426701 8iy2:D (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426702 8iy2:E (2.76) BS01 3AM ? N/A Q6PVL0 38103556
    426703 8iy2:E (2.76) BS02 3GP ? N/A Q6PVL0 38103556
    426704 8iy2:E (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426705 8iy2:F (2.76) BS01 3GP ? N/A Q6PVL0 38103556
    426706 8iy2:F (2.76) BS02 3AM ? N/A Q6PVL0 38103556
    426707 8iy2:F (2.76) BS03 3AM ? N/A Q6PVL0 38103556
    426708 8iy4:A (2.0) BS01 MER 3.5.2.6 GO:0008800 ... Q01166 N/A
    426709 8iy9:R (3.37) BS01 NIO ? GO:0001781 ... P08173
    Q8TDS4
    38431681
    426710 8iyb:A (1.5) BS01 FER 3.1.1.-
    3.1.1.72
    GO:0000272 ... A0A1L9T9J3 37783244
    426711 8iyb:B (1.5) BS01 FER 3.1.1.-
    3.1.1.72
    GO:0000272 ... A0A1L9T9J3 37783244
    426712 8iyc:A (1.55) BS01 SXX 3.1.1.-
    3.1.1.72
    GO:0000272 ... A0A1L9T9J3 37783244
    426713 8iyc:B (1.55) BS01 SXX 3.1.1.-
    3.1.1.72
    GO:0000272 ... A0A1L9T9J3 37783244
    426714 8iye:A (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    426715 8iye:B (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    426716 8iyf:A (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    426717 8iyf:B (1.9) BS01 GDP 2.5.1.135 GO:0003824 ... Q15JG1 N/A
    426718 8iyh:D (3.3) BS01 FI7 ? GO:0001781 ... P08173
    Q8TDS4
    38431681
    426719 8iyj:AA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426720 8iyj:AB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426721 8iyj:AC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426722 8iyj:AD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426723 8iyj:AE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426724 8iyj:AF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426725 8iyj:AG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426726 8iyj:AH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426727 8iyj:AI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426728 8iyj:AJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426729 8iyj:AK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426730 8iyj:AL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426731 8iyj:AM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426732 8iyj:AN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426733 8iyj:AO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426734 8iyj:AP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426735 8iyj:BB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426736 8iyj:BC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426737 8iyj:BD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426738 8iyj:BE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426739 8iyj:BF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426740 8iyj:BG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426741 8iyj:BH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426742 8iyj:BI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426743 8iyj:BJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426744 8iyj:BK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426745 8iyj:BL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426746 8iyj:BM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426747 8iyj:BN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426748 8iyj:BO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426749 8iyj:BP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426750 8iyj:CB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426751 8iyj:CB (3.5) BS02 GTP ? GO:0003725 ... P68372 37295417
    426752 8iyj:CC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426753 8iyj:CD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426754 8iyj:CE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426755 8iyj:CF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426756 8iyj:CG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426757 8iyj:CH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426758 8iyj:CI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426759 8iyj:CJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426760 8iyj:CK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426761 8iyj:CL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426762 8iyj:CM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426763 8iyj:CN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426764 8iyj:CO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426765 8iyj:CP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426766 8iyj:CQ (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426767 8iyj:DB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426768 8iyj:DC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426769 8iyj:DD (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426770 8iyj:DE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426771 8iyj:DF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426772 8iyj:DG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426773 8iyj:DH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426774 8iyj:DI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426775 8iyj:DJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426776 8iyj:DK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426777 8iyj:DL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426778 8iyj:DM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426779 8iyj:DN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426780 8iyj:DO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426781 8iyj:DP (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426782 8iyj:DQ (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426783 8iyj:EA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426784 8iyj:EB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426785 8iyj:EC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426786 8iyj:ED (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426787 8iyj:EE (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426788 8iyj:EF (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426789 8iyj:EG (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426790 8iyj:EH (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426791 8iyj:EI (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426792 8iyj:EJ (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426793 8iyj:EK (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426794 8iyj:EL (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426795 8iyj:EM (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426796 8iyj:EN (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426797 8iyj:EO (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426798 8iyj:FA (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417
    426799 8iyj:FB (3.5) BS01 GDP ? GO:0003725 ... P68372 37295417
    426800 8iyj:FC (3.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37295417

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218