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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    426401 8iwz:G (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    426402 8iwz:G (2.52) BS02 CLA ? GO:0009765 ... P12333 37653340
    426403 8iwz:G (2.52) BS03 CLA ? GO:0009765 ... P12333 37653340
    426404 8iwz:G (2.52) BS04 CHL ? GO:0009765 ... P12333 37653340
    426405 8iwz:G (2.52) BS05 CHL ? GO:0009765 ... P12333 37653340
    426406 8iwz:G (2.52) BS06 CHL ? GO:0009765 ... P12333 37653340
    426407 8iwz:G (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    426408 8iwz:G (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    426409 8iwz:G (2.52) BS09 CLA ? GO:0009765 ... P12333 37653340
    426410 8iwz:G (2.52) BS10 CLA ? GO:0009765 ... P12333 37653340
    426411 8iwz:G (2.52) BS11 CLA ? GO:0009765 ... P12333 37653340
    426412 8iwz:G (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    426413 8iwz:G (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    426414 8iwz:G (2.52) BS14 CHL ? GO:0009765 ... P12333 37653340
    426415 8iwz:N (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    426416 8iwz:N (2.52) BS02 CLA ? GO:0009765 ... P12333 37653340
    426417 8iwz:N (2.52) BS03 CLA ? GO:0009765 ... P12333 37653340
    426418 8iwz:N (2.52) BS04 CHL ? GO:0009765 ... P12333 37653340
    426419 8iwz:N (2.52) BS05 CHL ? GO:0009765 ... P12333 37653340
    426420 8iwz:N (2.52) BS06 CHL ? GO:0009765 ... P12333 37653340
    426421 8iwz:N (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    426422 8iwz:N (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    426423 8iwz:N (2.52) BS09 CLA ? GO:0009765 ... P12333 37653340
    426424 8iwz:N (2.52) BS10 CLA ? GO:0009765 ... P12333 37653340
    426425 8iwz:N (2.52) BS11 CLA ? GO:0009765 ... P12333 37653340
    426426 8iwz:N (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    426427 8iwz:N (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    426428 8iwz:Y (2.52) BS01 CHL ? GO:0009765 ... P12333 37653340
    426429 8iwz:Y (2.52) BS02 CHL ? GO:0009765 ... P12333 37653340
    426430 8iwz:Y (2.52) BS03 CHL ? GO:0009765 ... P12333 37653340
    426431 8iwz:Y (2.52) BS04 CLA ? GO:0009765 ... P12333 37653340
    426432 8iwz:Y (2.52) BS05 CLA ? GO:0009765 ... P12333 37653340
    426433 8iwz:Y (2.52) BS06 CLA ? GO:0009765 ... P12333 37653340
    426434 8iwz:Y (2.52) BS07 CHL ? GO:0009765 ... P12333 37653340
    426435 8iwz:Y (2.52) BS08 CHL ? GO:0009765 ... P12333 37653340
    426436 8iwz:Y (2.52) BS09 CHL ? GO:0009765 ... P12333 37653340
    426437 8iwz:Y (2.52) BS10 CHL ? GO:0009765 ... P12333 37653340
    426438 8iwz:Y (2.52) BS11 CHL ? GO:0009765 ... P12333 37653340
    426439 8iwz:Y (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    426440 8iwz:Y (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    426441 8iwz:Y (2.52) BS14 CLA ? GO:0009765 ... P12333 37653340
    426442 8iwz:Y (2.52) BS15 CLA ? GO:0009765 ... P12333 37653340
    426443 8iwz:Y (2.52) BS16 CLA ? GO:0009765 ... P12333 37653340
    426444 8ix0:G (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    426445 8ix0:G (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    426446 8ix0:G (2.64) BS03 CHL ? GO:0009765 ... P12333 37653340
    426447 8ix0:G (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    426448 8ix0:G (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    426449 8ix0:G (2.64) BS06 CLA ? GO:0009765 ... P12333 37653340
    426450 8ix0:G (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    426451 8ix0:N (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    426452 8ix0:N (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    426453 8ix0:N (2.64) BS03 CHL ? GO:0009765 ... P12333 37653340
    426454 8ix0:N (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    426455 8ix0:N (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    426456 8ix0:N (2.64) BS06 CHL ? GO:0009765 ... P12333 37653340
    426457 8ix0:N (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    426458 8ix0:N (2.64) BS08 CLA ? GO:0009765 ... P12333 37653340
    426459 8ix0:Y (2.64) BS01 CHL ? GO:0009765 ... P12333 37653340
    426460 8ix0:Y (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    426461 8ix0:Y (2.64) BS03 CLA ? GO:0009765 ... P12333 37653340
    426462 8ix0:Y (2.64) BS04 CHL ? GO:0009765 ... P12333 37653340
    426463 8ix0:Y (2.64) BS05 CHL ? GO:0009765 ... P12333 37653340
    426464 8ix0:Y (2.64) BS06 CHL ? GO:0009765 ... P12333 37653340
    426465 8ix0:Y (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    426466 8ix0:Y (2.64) BS08 CLA ? GO:0009765 ... P12333 37653340
    426467 8ix0:Y (2.64) BS09 CLA ? GO:0009765 ... P12333 37653340
    426468 8ix1:G (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    426469 8ix1:G (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    426470 8ix1:G (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    426471 8ix1:G (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    426472 8ix1:G (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    426473 8ix1:G (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    426474 8ix1:G (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    426475 8ix1:G (2.63) BS08 CLA ? GO:0009765 ... P12333 37653340
    426476 8ix1:G (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    426477 8ix1:G (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    426478 8ix1:G (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    426479 8ix1:G (2.63) BS12 CLA ? GO:0009765 ... P12333 37653340
    426480 8ix1:N (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    426481 8ix1:N (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    426482 8ix1:N (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    426483 8ix1:N (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    426484 8ix1:N (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    426485 8ix1:N (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    426486 8ix1:N (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    426487 8ix1:N (2.63) BS08 CHL ? GO:0009765 ... P12333 37653340
    426488 8ix1:N (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    426489 8ix1:N (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    426490 8ix1:N (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    426491 8ix1:N (2.63) BS12 CLA ? GO:0009765 ... P12333 37653340
    426492 8ix1:N (2.63) BS13 CLA ? GO:0009765 ... P12333 37653340
    426493 8ix1:Y (2.63) BS01 CHL ? GO:0009765 ... P12333 37653340
    426494 8ix1:Y (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    426495 8ix1:Y (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    426496 8ix1:Y (2.63) BS04 CHL ? GO:0009765 ... P12333 37653340
    426497 8ix1:Y (2.63) BS05 CHL ? GO:0009765 ... P12333 37653340
    426498 8ix1:Y (2.63) BS06 CHL ? GO:0009765 ... P12333 37653340
    426499 8ix1:Y (2.63) BS07 CHL ? GO:0009765 ... P12333 37653340
    426500 8ix1:Y (2.63) BS08 CLA ? GO:0009765 ... P12333 37653340
    426501 8ix1:Y (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    426502 8ix1:Y (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    426503 8ix1:Y (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    426504 8ix2:G (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    426505 8ix2:G (2.8) BS02 CHL ? GO:0009765 ... P12333 37653340
    426506 8ix2:G (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    426507 8ix2:G (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    426508 8ix2:G (2.8) BS05 CHL ? GO:0009765 ... P12333 37653340
    426509 8ix2:G (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    426510 8ix2:G (2.8) BS07 CLA ? GO:0009765 ... P12333 37653340
    426511 8ix2:G (2.8) BS08 CLA ? GO:0009765 ... P12333 37653340
    426512 8ix2:G (2.8) BS09 CLA ? GO:0009765 ... P12333 37653340
    426513 8ix2:G (2.8) BS10 CLA ? GO:0009765 ... P12333 37653340
    426514 8ix2:N (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    426515 8ix2:N (2.8) BS02 CHL ? GO:0009765 ... P12333 37653340
    426516 8ix2:N (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    426517 8ix2:N (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    426518 8ix2:N (2.8) BS05 CLA ? GO:0009765 ... P12333 37653340
    426519 8ix2:N (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    426520 8ix2:Y (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    426521 8ix2:Y (2.8) BS02 CLA ? GO:0009765 ... P12333 37653340
    426522 8ix2:Y (2.8) BS03 CHL ? GO:0009765 ... P12333 37653340
    426523 8ix2:Y (2.8) BS04 CHL ? GO:0009765 ... P12333 37653340
    426524 8ix2:Y (2.8) BS05 CHL ? GO:0009765 ... P12333 37653340
    426525 8ix2:Y (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    426526 8ix2:Y (2.8) BS07 CLA ? GO:0009765 ... P12333 37653340
    426527 8ix2:Y (2.8) BS08 CLA ? GO:0009765 ... P12333 37653340
    426528 8ix7:A (1.7) BS01 GSH 2.5.1.18 GO:0004364 ... A2XC69 N/A
    426529 8ix7:B (1.7) BS01 GSH 2.5.1.18 GO:0004364 ... A2XC69 N/A
    426530 8ix8:A (1.5) BS01 TEB 3.5.2.6 GO:0008800 ... Q01166 N/A
    426531 8ix9:A (2.198) BS01 NDP 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426532 8ix9:B (2.198) BS01 NDP 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426533 8ix9:C (2.198) BS01 NDP 1.1.1.169 GO:0005737 ... Q9I2Y5 38962820
    426534 8ixa:A (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426535 8ixa:B (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426536 8ixa:C (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426537 8ixa:D (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426538 8ixa:E (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426539 8ixa:F (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426540 8ixa:G (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426541 8ixa:H (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426542 8ixa:I (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426543 8ixa:J (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426544 8ixa:K (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426545 8ixa:L (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426546 8ixa:M (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426547 8ixa:N (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426548 8ixa:O (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426549 8ixa:P (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426550 8ixa:Q (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426551 8ixa:R (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426552 8ixa:S (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426553 8ixa:T (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426554 8ixa:U (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426555 8ixa:V (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426556 8ixa:W (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426557 8ixa:X (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426558 8ixa:Y (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426559 8ixa:Z (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426560 8ixa:a (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426561 8ixb:A (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426562 8ixb:E (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426563 8ixb:F (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426564 8ixb:H (4.2) BS01 GTP 3.6.5.- GO:0000226 ... P68369 37439022
    426565 8ixb:Q (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426566 8ixb:U (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426567 8ixb:V (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426568 8ixb:W (4.2) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426569 8ixb:g (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426570 8ixb:k (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426571 8ixb:l (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426572 8ixb:m (4.2) BS01 ATP ? GO:0003777 ... P33176 37439022
    426573 8ixd:A (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426574 8ixd:B (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426575 8ixd:C (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426576 8ixd:D (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426577 8ixd:E (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426578 8ixd:F (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426579 8ixd:G (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426580 8ixd:H (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426581 8ixd:I (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    426582 8ixd:J (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426583 8ixd:K (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426584 8ixd:L (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426585 8ixd:M (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426586 8ixd:N (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426587 8ixd:O (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426588 8ixd:P (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426589 8ixd:Q (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426590 8ixd:R (4.4) BS01 G2P ? GO:0003924 ... Q7TMM9 37439022
    426591 8ixd:S (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426592 8ixd:T (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426593 8ixd:U (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426594 8ixd:V (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426595 8ixd:W (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426596 8ixd:X (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426597 8ixd:Y (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426598 8ixd:Z (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426599 8ixd:a (4.4) BS01 ATP ? GO:0003777 ... P33176 37439022
    426600 8ixe:B (4.4) BS01 GTP 3.6.5.- GO:0005200 ... P68373 37439022
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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