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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425601 8iri:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425602 8iri:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425603 8iri:d (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425604 8iri:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425605 8iri:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425606 8iri:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425607 8iri:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425608 8iri:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425609 8iri:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425610 8iri:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425611 8iri:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    425612 8iri:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425613 8iri:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425614 8iri:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425615 8iri:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425616 8iri:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    425617 8irk:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425618 8irk:A (2.35) BS02 PYR 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425619 8irk:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425620 8irk:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425621 8irk:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425622 8irm:A (2.6) BS01 ADE ? GO:0005345 ... Q9SRK7 38172575
    425623 8irm:B (2.6) BS01 ADE ? GO:0005345 ... Q9SRK7 38172575
    425624 8irn:A (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    425625 8irn:B (2.7) BS01 EMU ? GO:0005345 ... Q9SRK7 38172575
    425626 8iro:A (2.7) BS01 ZEA ? GO:0005345 ... Q9SRK7 38172575
    425627 8iro:B (2.7) BS01 ZEA ? GO:0005345 ... Q9SRK7 38172575
    425628 8irp:A (2.8) BS01 H35 ? GO:0005345 ... Q9SRK7 38172575
    425629 8irp:B (2.8) BS01 H35 ? GO:0005345 ... Q9SRK7 38172575
    425630 8irr:R (3.2) BS01 R5F ? GO:0001588 ... P21728 37221270
    425631 8irr:R (3.2) BS02 CLR ? GO:0001588 ... P21728 37221270
    425632 8irr:R (3.2) BS03 CLR ? GO:0001588 ... P21728 37221270
    425633 8irs:R (3.0) BS01 R5F ? GO:0000139 ... P0ABE7
    P14416
    37221270
    425634 8irt:R (2.7) BS01 R5F ? GO:0001591 ... P0ABE7
    P35462
    37221270
    425635 8iru:R (3.2) BS01 R5F N/A GO:0004930 ... N/A 37221270
    425636 8iru:R (3.2) BS02 CLR N/A GO:0004930 ... N/A 37221270
    425637 8iru:R (3.2) BS03 CLR N/A GO:0004930 ... N/A 37221270
    425638 8iru:R (3.2) BS04 CLR N/A GO:0004930 ... N/A 37221270
    425639 8iru:R (3.2) BS05 CLR N/A GO:0004930 ... N/A 37221270
    425640 8irv:R (3.1) BS01 R5F ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425641 8irv:R (3.1) BS02 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425642 8irv:R (3.1) BS03 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425643 8irv:R (3.1) BS04 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425644 8irv:R (3.1) BS05 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425645 8irv:R (3.1) BS06 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425646 8irv:R (3.1) BS07 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425647 8irv:R (3.1) BS08 CLR ? GO:0001588 ... P0ABE7
    P21918
    37221270
    425648 8iry:A (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425649 8iry:A (2.35) BS02 PYR 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425650 8iry:B (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425651 8iry:C (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425652 8iry:D (2.35) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425653 8irz:A (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425654 8irz:B (2.86) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425655 8is0:A (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425656 8is0:A (3.02) BS02 DHA 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425657 8is0:B (3.02) BS01 PLP 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425658 8is0:B (3.02) BS02 DHA 4.4.-.- GO:0016829 ... A0R5M7 38072054
    425659 8is4:A (1.9) BS01 URF N/A GO:0016787 ... N/A 37680460
    425660 8is4:B (1.9) BS01 URF N/A GO:0016787 ... N/A 37680460
    425661 8is7:A (1.6) BS01 FPS N/A GO:0003824 ... B9UXM0 N/A
    425662 8is7:A (1.6) BS02 FPS N/A GO:0003824 ... B9UXM0 N/A
    425663 8is8:A (2.3) BS01 GST N/A GO:0003824 ... B9UXM0 N/A
    425664 8is8:A (2.3) BS02 GST N/A GO:0003824 ... B9UXM0 N/A
    425665 8is9:A (1.59) BS01 FPS N/A GO:0003824 ... B9UXM0 N/A
    425666 8isa:A (1.59) BS01 GST N/A GO:0003824 ... B9UXM0 N/A
    425667 8isj:A (3.0) BS01 O6E ? GO:0000155 ... P14712 37491602
    425668 8isj:B (3.0) BS01 O6E ? GO:0000155 ... P14712 37491602
    425669 8isk:A (3.3) BS01 O6E ? GO:0000155 ... Q6XFQ4 37491602
    425670 8isk:B (3.3) BS01 O6E ? GO:0000155 ... Q6XFQ4 37491602
    425671 8ism:A (2.76) BS01 ZJZ ? GO:0003677 ... P02768 N/A
    425672 8isp:A (2.11) BS01 Q53 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    425673 8isq:A (2.24) BS01 ZZ7 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    425674 8isr:A (2.09) BS01 Q6R 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    425675 8isr:B (2.09) BS01 Q6R 3.5.2.6 GO:0008800 ... A0A126NGE0 38588869
    425676 8it4:A (2.4) BS01 SKU 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425677 8it4:B (2.4) BS01 SKU 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425678 8it5:C (2.2) BS01 QAI 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425679 8it6:C (2.55) BS01 Q90 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425680 8it7:C (2.8) BS01 Q9F 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425681 8it8:C (1.95) BS01 Q9L 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425682 8it9:A (2.14) BS01 ZL6 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 37418628
    425683 8it9:A (2.14) BS02 AKG 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 37418628
    425684 8ita:A (2.5) BS01 R0U N/A GO:0008194 ... N/A 37581303
    425685 8ita:A (2.5) BS02 UDP N/A GO:0008194 ... N/A 37581303
    425686 8itb:C (2.38) BS01 Q9R 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425687 8itb:C (2.38) BS02 Q9R 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425688 8itc:C (1.88) BS01 QA0 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425689 8itc:C (1.88) BS02 QA0 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425690 8itd:C (1.9) BS01 QA3 5.4.2.11
    5.4.2.4
    GO:0003824 ... P18669 N/A
    425691 8itf:R (3.46) BS01 8IA ? GO:0001594 ... Q5QD04 37225986
    425692 8itr:A (2.44) BS01 LPC ? GO:0003677 ... P02768 37731243
    425693 8itr:A (2.44) BS02 LPC ? GO:0003677 ... P02768 37731243
    425694 8itr:A (2.44) BS03 LPC ? GO:0003677 ... P02768 37731243
    425695 8itr:A (2.44) BS04 LPC ? GO:0003677 ... P02768 37731243
    425696 8itr:A (2.44) BS05 LPC ? GO:0003677 ... P02768 37731243
    425697 8itr:A (2.44) BS06 LPC ? GO:0003677 ... P02768 37731243
    425698 8itt:A (3.03) BS01 LPC ? GO:0003677 ... P02768 37731243
    425699 8itt:A (3.03) BS02 LPC ? GO:0003677 ... P02768 37731243
    425700 8itt:A (3.03) BS03 LPC ? GO:0003677 ... P02768 37731243
    425701 8itt:B (3.03) BS01 LPC ? GO:0003677 ... P02768 37731243
    425702 8itt:B (3.03) BS02 LPC ? GO:0003677 ... P02768 37731243
    425703 8itt:B (3.03) BS03 LPC ? GO:0003677 ... P02768 37731243
    425704 8itv:A (2.3) BS02 GTP 3.6.5.- GO:0000054 ... P62826 N/A
    425705 8itv:C (2.3) BS01 Q73 ? GO:0000055 ... P30822 N/A
    425706 8itx:A (1.12) BS01 SXP ? GO:0030246 ... P17931 N/A
    425707 8itx:B (1.12) BS01 SXP ? GO:0030246 ... P17931 N/A
    425708 8ity:P (3.9) BS02 SF4 ? GO:0000428 ... Q9H1D9 37165065
    425709 8itz:A (1.22) BS01 QB2 ? GO:0030246 ... P17931 N/A
    425710 8iu0:A (2.66) BS01 RET N/A GO:0016020 ... N/A 37652010
    425711 8iu1:A (1.97) BS01 QB2 ? GO:0030246 ... P16110 N/A
    425712 8iu2:R (3.35) BS01 RET ? GO:0001750 ... P04000 N/A
    425713 8iu9:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    425714 8iu9:A (1.8) BS02 BGC ? GO:0016787 ... A5FBI2 37269952
    425715 8iu9:A (1.8) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    425716 8iua:A (1.8) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    425717 8iua:A (1.8) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    425718 8iua:A (1.8) BS03 BGC ? GO:0016787 ... A5FBI2 37269952
    425719 8iub:A (1.18) BS01 GLC ? GO:0016787 ... A5FBI2 37269952
    425720 8iub:A (1.18) BS02 GLC ? GO:0016787 ... A5FBI2 37269952
    425721 8iub:A (1.18) BS03 GLC ? GO:0016787 ... A5FBI2 37269952
    425722 8iuc:A (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    425723 8iuc:A (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    425724 8iuc:B (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    425725 8iuc:B (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    425726 8iuc:C (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    425727 8iuc:C (1.56) BS02 GLC ? GO:0003824 ... A5FBJ5 37269952
    425728 8iue:P (4.1) BS03 SF4 ? GO:0000428 ... Q9H1D9 37165065
    425729 8iuf:1A (2.81) BS01 FES N/A GO:0008137 ... N/A 38388527
    425730 8iuf:1A (2.81) BS02 SF4 N/A GO:0008137 ... N/A 38388527
    425731 8iuf:1A (2.81) BS03 SF4 N/A GO:0008137 ... N/A 38388527
    425732 8iuf:4D (2.81) BS01 S12 N/A N/A N/A 38388527
    425733 8iuf:4F (2.81) BS01 S12 N/A N/A N/A 38388527
    425734 8iuf:A6 (2.81) BS01 ZMP N/A N/A N/A 38388527
    425735 8iuf:A9 (2.81) BS01 NDP N/A N/A N/A 38388527
    425736 8iuf:AB (2.81) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    425737 8iuf:AC (2.81) BS01 ZMP N/A GO:0006633 ... N/A 38388527
    425738 8iuf:B5 (2.81) BS01 U10 N/A N/A N/A 38388527
    425739 8iuf:B9 (2.81) BS01 ZMP N/A N/A N/A 38388527
    425740 8iuf:C1 (2.81) BS01 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    425741 8iuf:C1 (2.81) BS02 HEA 7.1.1.9 GO:0004129 ... Q34463 38388527
    425742 8iuf:N4 (2.81) BS01 U10 7.1.1.2 GO:0003954 ... A0A0S2YRV6 38388527
    425743 8iuf:QC (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    425744 8iuf:QC (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    425745 8iuf:QD (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    425746 8iuf:QE (2.81) BS01 FES N/A GO:0008121 ... N/A 38388527
    425747 8iuf:Qc (2.81) BS01 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    425748 8iuf:Qc (2.81) BS02 HEM ? GO:0005739 ... A0A0S2YRT7 38388527
    425749 8iuf:Qd (2.81) BS01 HEC 7.1.1.8 GO:0005739 ... P20114 38388527
    425750 8iuf:Qe (2.81) BS01 FES N/A GO:0008121 ... N/A 38388527
    425751 8iuf:S2 (2.81) BS01 SF4 N/A GO:0016651 ... N/A 38388527
    425752 8iuf:S7 (2.81) BS01 SF4 N/A GO:0008137 ... N/A 38388527
    425753 8iuf:S8 (2.81) BS01 SF4 N/A GO:0016020 ... N/A 38388527
    425754 8iuf:S8 (2.81) BS02 SF4 N/A GO:0016020 ... N/A 38388527
    425755 8iuf:V1 (2.81) BS01 FMN N/A GO:0010181 ... N/A 38388527
    425756 8iuf:V1 (2.81) BS02 SF4 N/A GO:0010181 ... N/A 38388527
    425757 8iuf:V2 (2.81) BS01 FES N/A GO:0016491 ... N/A 38388527
    425758 8iug:0 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    425759 8iug:0 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425760 8iug:0 (2.86) BS03 U42 ? GO:0005886 ... A7NQE9 37468106
    425761 8iug:0 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    425762 8iug:0 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    425763 8iug:1 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425764 8iug:1 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    425765 8iug:1 (2.86) BS03 U4Z ? GO:0005886 ... Q83XD1 37468106
    425766 8iug:2 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    425767 8iug:2 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425768 8iug:3 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425769 8iug:3 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    425770 8iug:3 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    425771 8iug:3 (2.86) BS04 U4Z ? GO:0005886 ... Q83XD1 37468106
    425772 8iug:4 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    425773 8iug:4 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425774 8iug:4 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    425775 8iug:5 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425776 8iug:5 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    425777 8iug:5 (2.86) BS03 U4Z ? GO:0005886 ... Q83XD1 37468106
    425778 8iug:5 (2.86) BS04 BCL ? GO:0005886 ... Q83XD1 37468106
    425779 8iug:6 (2.86) BS01 U42 ? GO:0005886 ... A7NQE9 37468106
    425780 8iug:6 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425781 8iug:6 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    425782 8iug:6 (2.86) BS04 BCL ? GO:0005886 ... A7NQE9 37468106
    425783 8iug:6 (2.86) BS05 BCL ? GO:0005886 ... A7NQE9 37468106
    425784 8iug:7 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425785 8iug:7 (2.86) BS02 U4Z ? GO:0005886 ... Q83XD1 37468106
    425786 8iug:7 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    425787 8iug:8 (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    425788 8iug:8 (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425789 8iug:8 (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    425790 8iug:9 (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425791 8iug:9 (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    425792 8iug:9 (2.86) BS03 BCL ? GO:0005886 ... Q83XD1 37468106
    425793 8iug:A (2.86) BS01 BCL ? GO:0005886 ... Q83XD1 37468106
    425794 8iug:A (2.86) BS02 BCL ? GO:0005886 ... Q83XD1 37468106
    425795 8iug:B (2.86) BS01 BCL ? GO:0005886 ... A7NQE9 37468106
    425796 8iug:B (2.86) BS02 BCL ? GO:0005886 ... A7NQE9 37468106
    425797 8iug:B (2.86) BS03 BCL ? GO:0005886 ... A7NQE9 37468106
    425798 8iug:C (2.86) BS01 BCL ? GO:0005506 ... Q83XC9 37468106
    425799 8iug:C (2.86) BS02 HEC ? GO:0005506 ... Q83XC9 37468106
    425800 8iug:C (2.86) BS03 HEC ? GO:0005506 ... Q83XC9 37468106

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218