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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425401 8irh:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425402 8irh:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425403 8irh:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425404 8irh:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425405 8irh:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425406 8irh:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425407 8irh:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425408 8irh:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425409 8irh:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425410 8irh:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425411 8irh:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    425412 8irh:C (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    425413 8irh:C (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    425414 8irh:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425415 8irh:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425416 8irh:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425417 8irh:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425418 8irh:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425419 8irh:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425420 8irh:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425421 8irh:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425422 8irh:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425423 8irh:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425424 8irh:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425425 8irh:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425426 8irh:C (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    425427 8irh:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425428 8irh:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425429 8irh:D (2.25) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425430 8irh:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425431 8irh:D (2.25) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425432 8irh:D (2.25) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425433 8irh:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425434 8irh:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425435 8irh:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425436 8irh:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425437 8irh:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425438 8irh:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425439 8irh:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425440 8irh:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425441 8irh:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425442 8irh:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425443 8irh:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425444 8irh:a (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    425445 8irh:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425446 8irh:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425447 8irh:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425448 8irh:a (2.25) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425449 8irh:a (2.25) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425450 8irh:a (2.25) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425451 8irh:a (2.25) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425452 8irh:a (2.25) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425453 8irh:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425454 8irh:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425455 8irh:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425456 8irh:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425457 8irh:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425458 8irh:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425459 8irh:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425460 8irh:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425461 8irh:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425462 8irh:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425463 8irh:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425464 8irh:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425465 8irh:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425466 8irh:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425467 8irh:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425468 8irh:c (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    425469 8irh:c (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    425470 8irh:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425471 8irh:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425472 8irh:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425473 8irh:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425474 8irh:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425475 8irh:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425476 8irh:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425477 8irh:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425478 8irh:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425479 8irh:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425480 8irh:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425481 8irh:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425482 8irh:c (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    425483 8irh:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425484 8irh:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425485 8irh:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425486 8irh:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425487 8irh:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425488 8irh:d (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425489 8irh:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425490 8irh:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425491 8irh:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425492 8irh:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425493 8irh:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425494 8irh:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425495 8irh:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425496 8irh:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    425497 8irh:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425498 8irh:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425499 8irh:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425500 8irh:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425501 8iri:A (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    425502 8iri:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425503 8iri:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425504 8iri:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425505 8iri:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425506 8iri:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425507 8iri:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425508 8iri:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425509 8iri:A (2.25) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425510 8iri:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425511 8iri:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425512 8iri:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425513 8iri:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425514 8iri:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425515 8iri:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425516 8iri:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425517 8iri:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425518 8iri:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425519 8iri:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425520 8iri:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425521 8iri:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425522 8iri:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425523 8iri:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425524 8iri:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425525 8iri:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    425526 8iri:C (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    425527 8iri:C (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    425528 8iri:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425529 8iri:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425530 8iri:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425531 8iri:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425532 8iri:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425533 8iri:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425534 8iri:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425535 8iri:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425536 8iri:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425537 8iri:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425538 8iri:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425539 8iri:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425540 8iri:C (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    425541 8iri:D (2.25) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425542 8iri:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425543 8iri:D (2.25) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425544 8iri:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425545 8iri:D (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425546 8iri:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425547 8iri:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425548 8iri:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425549 8iri:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425550 8iri:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425551 8iri:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425552 8iri:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425553 8iri:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425554 8iri:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425555 8iri:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425556 8iri:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425557 8iri:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425558 8iri:X (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    425559 8iri:a (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    425560 8iri:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425561 8iri:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425562 8iri:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425563 8iri:a (2.25) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425564 8iri:a (2.25) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425565 8iri:a (2.25) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425566 8iri:a (2.25) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425567 8iri:a (2.25) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425568 8iri:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425569 8iri:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425570 8iri:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425571 8iri:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425572 8iri:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425573 8iri:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425574 8iri:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425575 8iri:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425576 8iri:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425577 8iri:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425578 8iri:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425579 8iri:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425580 8iri:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425581 8iri:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425582 8iri:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425583 8iri:c (2.25) BS01 OEY ? GO:0005737 ... D0VWR7 38297122
    425584 8iri:c (2.25) BS02 OEX ? GO:0005737 ... D0VWR7 38297122
    425585 8iri:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425586 8iri:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425587 8iri:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425588 8iri:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425589 8iri:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425590 8iri:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425591 8iri:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425592 8iri:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425593 8iri:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425594 8iri:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425595 8iri:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425596 8iri:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425597 8iri:c (2.25) BS15 CLA ? GO:0005737 ... D0VWR7 38297122
    425598 8iri:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425599 8iri:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425600 8iri:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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