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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425201 8irf:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425202 8irf:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425203 8irf:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425204 8irf:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425205 8irf:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425206 8irf:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425207 8irf:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425208 8irf:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425209 8irf:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425210 8irf:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425211 8irf:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425212 8irf:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425213 8irf:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425214 8irf:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425215 8irf:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425216 8irf:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425217 8irf:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425218 8irf:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425219 8irf:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425220 8irf:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425221 8irf:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425222 8irf:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425223 8irf:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425224 8irf:a (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425225 8irf:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425226 8irf:a (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425227 8irf:a (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425228 8irf:a (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425229 8irf:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425230 8irf:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425231 8irf:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425232 8irf:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425233 8irf:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425234 8irf:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425235 8irf:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425236 8irf:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425237 8irf:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425238 8irf:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425239 8irf:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425240 8irf:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425241 8irf:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425242 8irf:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425243 8irf:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425244 8irf:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425245 8irf:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425246 8irf:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425247 8irf:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425248 8irf:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425249 8irf:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425250 8irf:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425251 8irf:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425252 8irf:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425253 8irf:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425254 8irf:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425255 8irf:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425256 8irf:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425257 8irf:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425258 8irf:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425259 8irf:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425260 8irf:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425261 8irf:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425262 8irf:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425263 8irf:d (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425264 8irf:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425265 8irf:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425266 8irf:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425267 8irf:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425268 8irf:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425269 8irf:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425270 8irf:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425271 8irf:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    425272 8irf:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425273 8irf:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425274 8irf:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425275 8irf:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425276 8irf:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    425277 8irg:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425278 8irg:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425279 8irg:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425280 8irg:A (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425281 8irg:A (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425282 8irg:A (2.3) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425283 8irg:A (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425284 8irg:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425285 8irg:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425286 8irg:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425287 8irg:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425288 8irg:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425289 8irg:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425290 8irg:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425291 8irg:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425292 8irg:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425293 8irg:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425294 8irg:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425295 8irg:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425296 8irg:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425297 8irg:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425298 8irg:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425299 8irg:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425300 8irg:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    425301 8irg:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425302 8irg:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425303 8irg:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425304 8irg:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425305 8irg:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425306 8irg:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425307 8irg:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425308 8irg:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425309 8irg:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425310 8irg:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425311 8irg:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425312 8irg:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425313 8irg:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425314 8irg:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425315 8irg:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425316 8irg:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425317 8irg:D (2.3) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425318 8irg:D (2.3) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425319 8irg:D (2.3) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425320 8irg:D (2.3) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425321 8irg:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425322 8irg:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425323 8irg:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    425324 8irg:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    425325 8irg:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    425326 8irg:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    425327 8irg:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    425328 8irg:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    425329 8irg:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    425330 8irg:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    425331 8irg:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425332 8irg:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425333 8irg:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425334 8irg:a (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425335 8irg:a (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425336 8irg:a (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425337 8irg:a (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425338 8irg:a (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425339 8irg:a (2.3) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425340 8irg:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425341 8irg:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425342 8irg:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425343 8irg:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425344 8irg:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425345 8irg:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425346 8irg:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425347 8irg:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425348 8irg:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425349 8irg:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425350 8irg:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425351 8irg:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425352 8irg:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425353 8irg:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425354 8irg:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425355 8irg:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425356 8irg:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425357 8irg:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425358 8irg:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425359 8irg:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425360 8irg:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425361 8irg:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425362 8irg:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425363 8irg:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425364 8irg:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425365 8irg:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425366 8irg:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425367 8irg:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425368 8irg:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425369 8irg:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425370 8irg:d (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425371 8irg:d (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425372 8irg:d (2.3) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425373 8irg:d (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425374 8irg:d (2.3) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425375 8irg:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425376 8irg:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425377 8irg:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    425378 8irg:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    425379 8irg:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    425380 8irg:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    425381 8irg:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    425382 8irg:h (2.3) BS04 CLA ? GO:0009523 ... P19052 38297122
    425383 8irg:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    425384 8irg:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    425385 8irg:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    425386 8irg:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425387 8irh:A (2.25) BS01 OEY 1.10.3.9 GO:0005506 ... P51765 38297122
    425388 8irh:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425389 8irh:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425390 8irh:A (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425391 8irh:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425392 8irh:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425393 8irh:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425394 8irh:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425395 8irh:A (2.25) BS10 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425396 8irh:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425397 8irh:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425398 8irh:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425399 8irh:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425400 8irh:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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