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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    425001 8ird:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425002 8ird:a (2.3) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425003 8ird:a (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425004 8ird:a (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425005 8ird:a (2.3) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425006 8ird:a (2.3) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425007 8ird:a (2.3) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425008 8ird:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425009 8ird:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425010 8ird:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425011 8ird:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425012 8ird:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425013 8ird:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425014 8ird:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425015 8ird:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425016 8ird:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425017 8ird:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425018 8ird:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425019 8ird:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425020 8ird:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425021 8ird:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425022 8ird:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425023 8ird:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425024 8ird:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425025 8ird:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425026 8ird:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425027 8ird:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425028 8ird:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425029 8ird:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425030 8ird:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425031 8ird:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425032 8ird:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425033 8ird:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425034 8ird:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425035 8ird:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425036 8ird:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425037 8ird:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425038 8ird:d (2.3) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425039 8ird:d (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425040 8ird:d (2.3) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425041 8ird:d (2.3) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425042 8ird:d (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425043 8ird:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425044 8ird:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425045 8ird:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    425046 8ird:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    425047 8ird:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    425048 8ird:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    425049 8ird:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    425050 8ird:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    425051 8ird:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    425052 8ird:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    425053 8ird:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425054 8ird:x (2.3) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    425055 8ire:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425056 8ire:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425057 8ire:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425058 8ire:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425059 8ire:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425060 8ire:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425061 8ire:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425062 8ire:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425063 8ire:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425064 8ire:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425065 8ire:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425066 8ire:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425067 8ire:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425068 8ire:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425069 8ire:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425070 8ire:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425071 8ire:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425072 8ire:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425073 8ire:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425074 8ire:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425075 8ire:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425076 8ire:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425077 8ire:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425078 8ire:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    425079 8ire:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425080 8ire:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425081 8ire:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425082 8ire:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425083 8ire:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425084 8ire:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425085 8ire:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425086 8ire:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425087 8ire:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425088 8ire:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425089 8ire:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425090 8ire:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425091 8ire:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425092 8ire:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425093 8ire:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425094 8ire:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425095 8ire:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425096 8ire:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425097 8ire:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425098 8ire:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425099 8ire:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425100 8ire:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425101 8ire:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425102 8ire:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425103 8ire:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425104 8ire:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425105 8ire:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425106 8ire:H (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    425107 8ire:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425108 8ire:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425109 8ire:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425110 8ire:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425111 8ire:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425112 8ire:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425113 8ire:a (2.25) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425114 8ire:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425115 8ire:a (2.25) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425116 8ire:a (2.25) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425117 8ire:a (2.25) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425118 8ire:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425119 8ire:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425120 8ire:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425121 8ire:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425122 8ire:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425123 8ire:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425124 8ire:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425125 8ire:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425126 8ire:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425127 8ire:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425128 8ire:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425129 8ire:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425130 8ire:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425131 8ire:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425132 8ire:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425133 8ire:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425134 8ire:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425135 8ire:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425136 8ire:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425137 8ire:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425138 8ire:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425139 8ire:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425140 8ire:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425141 8ire:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425142 8ire:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425143 8ire:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425144 8ire:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    425145 8ire:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    425146 8ire:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    425147 8ire:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    425148 8ire:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425149 8ire:d (2.25) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425150 8ire:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425151 8ire:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425152 8ire:d (2.25) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425153 8ire:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425154 8ire:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425155 8ire:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    425156 8ire:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    425157 8ire:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    425158 8ire:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    425159 8ire:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    425160 8ire:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    425161 8ire:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    425162 8ire:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    425163 8ire:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    425164 8ire:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425165 8ire:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    425166 8irf:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425167 8irf:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425168 8irf:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425169 8irf:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425170 8irf:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    425171 8irf:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    425172 8irf:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    425173 8irf:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    425174 8irf:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    425175 8irf:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    425176 8irf:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    425177 8irf:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    425178 8irf:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    425179 8irf:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    425180 8irf:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    425181 8irf:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    425182 8irf:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    425183 8irf:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    425184 8irf:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    425185 8irf:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    425186 8irf:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    425187 8irf:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    425188 8irf:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    425189 8irf:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    425190 8irf:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    425191 8irf:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    425192 8irf:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    425193 8irf:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    425194 8irf:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    425195 8irf:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    425196 8irf:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    425197 8irf:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    425198 8irf:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    425199 8irf:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    425200 8irf:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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