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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424801 8irb:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424802 8irb:c (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424803 8irb:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424804 8irb:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424805 8irb:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424806 8irb:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424807 8irb:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424808 8irb:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424809 8irb:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424810 8irb:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424811 8irb:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424812 8irb:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424813 8irb:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424814 8irb:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424815 8irb:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424816 8irb:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424817 8irb:d (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424818 8irb:d (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424819 8irb:d (2.3) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424820 8irb:d (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424821 8irb:d (2.3) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424822 8irb:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424823 8irb:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424824 8irb:e (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    424825 8irb:f (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    424826 8irb:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    424827 8irb:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    424828 8irb:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    424829 8irb:h (2.3) BS04 CLA ? GO:0009523 ... P19052 38297122
    424830 8irb:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    424831 8irb:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    424832 8irb:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    424833 8irb:v (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424834 8irc:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424835 8irc:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424836 8irc:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424837 8irc:A (2.25) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424838 8irc:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424839 8irc:A (2.25) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424840 8irc:A (2.25) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424841 8irc:A (2.25) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424842 8irc:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424843 8irc:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424844 8irc:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424845 8irc:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424846 8irc:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424847 8irc:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424848 8irc:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424849 8irc:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424850 8irc:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424851 8irc:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424852 8irc:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424853 8irc:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424854 8irc:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424855 8irc:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424856 8irc:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424857 8irc:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424858 8irc:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424859 8irc:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424860 8irc:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424861 8irc:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424862 8irc:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424863 8irc:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424864 8irc:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424865 8irc:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424866 8irc:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424867 8irc:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424868 8irc:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424869 8irc:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424870 8irc:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424871 8irc:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424872 8irc:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424873 8irc:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424874 8irc:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424875 8irc:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424876 8irc:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424877 8irc:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424878 8irc:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424879 8irc:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424880 8irc:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    424881 8irc:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    424882 8irc:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    424883 8irc:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    424884 8irc:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    424885 8irc:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    424886 8irc:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    424887 8irc:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    424888 8irc:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424889 8irc:a (2.25) BS02 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424890 8irc:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424891 8irc:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424892 8irc:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424893 8irc:a (2.25) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424894 8irc:a (2.25) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424895 8irc:a (2.25) BS08 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424896 8irc:a (2.25) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424897 8irc:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424898 8irc:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424899 8irc:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424900 8irc:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424901 8irc:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424902 8irc:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424903 8irc:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424904 8irc:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424905 8irc:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424906 8irc:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424907 8irc:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424908 8irc:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424909 8irc:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424910 8irc:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424911 8irc:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424912 8irc:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424913 8irc:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424914 8irc:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424915 8irc:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424916 8irc:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424917 8irc:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424918 8irc:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424919 8irc:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424920 8irc:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424921 8irc:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424922 8irc:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424923 8irc:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424924 8irc:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424925 8irc:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424926 8irc:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424927 8irc:d (2.25) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424928 8irc:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424929 8irc:d (2.25) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424930 8irc:d (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424931 8irc:d (2.25) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424932 8irc:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424933 8irc:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424934 8irc:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424935 8irc:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    424936 8irc:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    424937 8irc:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    424938 8irc:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    424939 8irc:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    424940 8irc:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    424941 8irc:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    424942 8irc:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    424943 8irc:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424944 8irc:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    424945 8ird:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424946 8ird:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424947 8ird:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424948 8ird:A (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424949 8ird:A (2.3) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424950 8ird:A (2.3) BS07 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424951 8ird:A (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424952 8ird:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424953 8ird:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424954 8ird:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424955 8ird:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424956 8ird:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424957 8ird:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424958 8ird:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424959 8ird:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424960 8ird:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424961 8ird:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424962 8ird:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424963 8ird:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424964 8ird:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424965 8ird:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424966 8ird:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424967 8ird:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424968 8ird:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424969 8ird:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424970 8ird:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424971 8ird:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424972 8ird:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424973 8ird:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424974 8ird:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424975 8ird:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424976 8ird:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424977 8ird:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424978 8ird:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424979 8ird:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424980 8ird:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424981 8ird:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424982 8ird:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424983 8ird:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424984 8ird:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424985 8ird:D (2.3) BS04 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424986 8ird:D (2.3) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424987 8ird:D (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424988 8ird:D (2.3) BS07 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424989 8ird:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424990 8ird:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424991 8ird:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    424992 8ird:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    424993 8ird:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    424994 8ird:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    424995 8ird:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    424996 8ird:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    424997 8ird:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    424998 8ird:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    424999 8ird:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    425000 8ird:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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