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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424601 8ir9:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424602 8ir9:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    424603 8ir9:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    424604 8ir9:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    424605 8ir9:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    424606 8ir9:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    424607 8ir9:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    424608 8ir9:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    424609 8ir9:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    424610 8ir9:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    424611 8ir9:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424612 8ira:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424613 8ira:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424614 8ira:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424615 8ira:A (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424616 8ira:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424617 8ira:A (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424618 8ira:A (2.2) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424619 8ira:A (2.2) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424620 8ira:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424621 8ira:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424622 8ira:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424623 8ira:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424624 8ira:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424625 8ira:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424626 8ira:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424627 8ira:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424628 8ira:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424629 8ira:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424630 8ira:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424631 8ira:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424632 8ira:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424633 8ira:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424634 8ira:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424635 8ira:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424636 8ira:C (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424637 8ira:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424638 8ira:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424639 8ira:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424640 8ira:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424641 8ira:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424642 8ira:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424643 8ira:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424644 8ira:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424645 8ira:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424646 8ira:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424647 8ira:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424648 8ira:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424649 8ira:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424650 8ira:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424651 8ira:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424652 8ira:D (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424653 8ira:D (2.2) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424654 8ira:D (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424655 8ira:D (2.2) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424656 8ira:D (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424657 8ira:D (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424658 8ira:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    424659 8ira:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    424660 8ira:H (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    424661 8ira:H (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    424662 8ira:H (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    424663 8ira:H (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    424664 8ira:I (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    424665 8ira:K (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    424666 8ira:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    424667 8ira:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424668 8ira:X (2.2) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    424669 8ira:a (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424670 8ira:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424671 8ira:a (2.2) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424672 8ira:a (2.2) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424673 8ira:a (2.2) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424674 8ira:a (2.2) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424675 8ira:a (2.2) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424676 8ira:a (2.2) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424677 8ira:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424678 8ira:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424679 8ira:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424680 8ira:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424681 8ira:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424682 8ira:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424683 8ira:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424684 8ira:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424685 8ira:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424686 8ira:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424687 8ira:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424688 8ira:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424689 8ira:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424690 8ira:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424691 8ira:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424692 8ira:c (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424693 8ira:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424694 8ira:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424695 8ira:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424696 8ira:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424697 8ira:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424698 8ira:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424699 8ira:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424700 8ira:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424701 8ira:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424702 8ira:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424703 8ira:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424704 8ira:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424705 8ira:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424706 8ira:d (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424707 8ira:d (2.2) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424708 8ira:d (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424709 8ira:d (2.2) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424710 8ira:d (2.2) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424711 8ira:d (2.2) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424712 8ira:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424713 8ira:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424714 8ira:e (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    424715 8ira:f (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    424716 8ira:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    424717 8ira:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    424718 8ira:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    424719 8ira:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    424720 8ira:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    424721 8ira:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    424722 8ira:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    424723 8ira:v (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424724 8irb:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424725 8irb:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424726 8irb:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424727 8irb:A (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424728 8irb:A (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424729 8irb:A (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424730 8irb:A (2.3) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424731 8irb:A (2.3) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424732 8irb:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424733 8irb:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424734 8irb:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424735 8irb:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424736 8irb:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424737 8irb:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424738 8irb:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424739 8irb:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424740 8irb:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424741 8irb:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424742 8irb:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424743 8irb:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424744 8irb:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424745 8irb:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424746 8irb:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424747 8irb:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424748 8irb:C (2.3) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424749 8irb:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424750 8irb:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424751 8irb:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424752 8irb:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424753 8irb:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424754 8irb:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424755 8irb:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424756 8irb:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424757 8irb:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424758 8irb:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424759 8irb:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424760 8irb:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424761 8irb:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424762 8irb:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424763 8irb:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424764 8irb:D (2.3) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424765 8irb:D (2.3) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424766 8irb:D (2.3) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424767 8irb:D (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424768 8irb:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424769 8irb:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424770 8irb:E (2.3) BS01 HEM ? GO:0005506 ... P12238 38297122
    424771 8irb:F (2.3) BS01 HEM ? GO:0005506 ... P12239 38297122
    424772 8irb:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    424773 8irb:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    424774 8irb:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    424775 8irb:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    424776 8irb:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    424777 8irb:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    424778 8irb:V (2.3) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424779 8irb:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424780 8irb:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424781 8irb:a (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424782 8irb:a (2.3) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424783 8irb:a (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424784 8irb:a (2.3) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424785 8irb:a (2.3) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424786 8irb:a (2.3) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424787 8irb:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424788 8irb:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424789 8irb:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424790 8irb:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424791 8irb:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424792 8irb:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424793 8irb:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424794 8irb:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424795 8irb:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424796 8irb:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424797 8irb:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424798 8irb:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424799 8irb:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424800 8irb:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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