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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    424401 8ir8:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424402 8ir8:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424403 8ir8:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424404 8ir8:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424405 8ir8:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424406 8ir8:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424407 8ir8:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424408 8ir8:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424409 8ir8:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424410 8ir8:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424411 8ir8:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424412 8ir8:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424413 8ir8:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424414 8ir8:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424415 8ir8:C (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424416 8ir8:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424417 8ir8:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424418 8ir8:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424419 8ir8:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424420 8ir8:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424421 8ir8:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424422 8ir8:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424423 8ir8:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424424 8ir8:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424425 8ir8:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424426 8ir8:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424427 8ir8:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424428 8ir8:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424429 8ir8:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424430 8ir8:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424431 8ir8:D (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424432 8ir8:D (2.25) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424433 8ir8:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424434 8ir8:D (2.25) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424435 8ir8:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424436 8ir8:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424437 8ir8:E (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    424438 8ir8:F (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    424439 8ir8:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    424440 8ir8:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    424441 8ir8:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    424442 8ir8:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    424443 8ir8:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    424444 8ir8:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    424445 8ir8:V (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424446 8ir8:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424447 8ir8:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424448 8ir8:a (2.25) BS04 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424449 8ir8:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424450 8ir8:a (2.25) BS06 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424451 8ir8:a (2.25) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424452 8ir8:a (2.25) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424453 8ir8:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424454 8ir8:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424455 8ir8:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424456 8ir8:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424457 8ir8:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424458 8ir8:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424459 8ir8:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424460 8ir8:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424461 8ir8:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424462 8ir8:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424463 8ir8:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424464 8ir8:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424465 8ir8:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424466 8ir8:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424467 8ir8:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424468 8ir8:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424469 8ir8:c (2.25) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424470 8ir8:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424471 8ir8:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424472 8ir8:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424473 8ir8:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424474 8ir8:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424475 8ir8:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424476 8ir8:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424477 8ir8:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424478 8ir8:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424479 8ir8:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424480 8ir8:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424481 8ir8:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424482 8ir8:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424483 8ir8:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424484 8ir8:d (2.25) BS03 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424485 8ir8:d (2.25) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424486 8ir8:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424487 8ir8:d (2.25) BS06 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424488 8ir8:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424489 8ir8:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424490 8ir8:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424491 8ir8:e (2.25) BS01 HEM ? GO:0005506 ... P12238 38297122
    424492 8ir8:f (2.25) BS01 HEM ? GO:0005506 ... P12239 38297122
    424493 8ir8:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    424494 8ir8:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    424495 8ir8:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    424496 8ir8:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    424497 8ir8:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    424498 8ir8:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    424499 8ir8:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    424500 8ir8:v (2.25) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424501 8ir8:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    424502 8ir9:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424503 8ir9:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424504 8ir9:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424505 8ir9:A (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424506 8ir9:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424507 8ir9:A (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424508 8ir9:A (2.2) BS08 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424509 8ir9:A (2.2) BS09 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424510 8ir9:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424511 8ir9:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424512 8ir9:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424513 8ir9:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424514 8ir9:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424515 8ir9:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424516 8ir9:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424517 8ir9:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424518 8ir9:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424519 8ir9:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424520 8ir9:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424521 8ir9:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424522 8ir9:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424523 8ir9:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424524 8ir9:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424525 8ir9:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    424526 8ir9:C (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424527 8ir9:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424528 8ir9:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424529 8ir9:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424530 8ir9:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424531 8ir9:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424532 8ir9:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424533 8ir9:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424534 8ir9:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424535 8ir9:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424536 8ir9:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424537 8ir9:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424538 8ir9:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424539 8ir9:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424540 8ir9:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424541 8ir9:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424542 8ir9:D (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424543 8ir9:D (2.2) BS05 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424544 8ir9:D (2.2) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424545 8ir9:D (2.2) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424546 8ir9:D (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424547 8ir9:D (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424548 8ir9:E (2.2) BS01 HEM ? GO:0005506 ... P12238 38297122
    424549 8ir9:F (2.2) BS01 HEM ? GO:0005506 ... P12239 38297122
    424550 8ir9:H (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    424551 8ir9:H (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    424552 8ir9:H (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    424553 8ir9:I (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    424554 8ir9:K (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    424555 8ir9:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    424556 8ir9:V (2.2) BS01 HEC ? GO:0005506 ... P0A387 38297122
    424557 8ir9:a (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424558 8ir9:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424559 8ir9:a (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424560 8ir9:a (2.2) BS05 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424561 8ir9:a (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    424562 8ir9:a (2.2) BS07 OEX 1.10.3.9 GO:0005506 ... P51765 38297122
    424563 8ir9:a (2.2) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 38297122
    424564 8ir9:a (2.2) BS09 BCT 1.10.3.9 GO:0005506 ... P51765 38297122
    424565 8ir9:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    424566 8ir9:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    424567 8ir9:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    424568 8ir9:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    424569 8ir9:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    424570 8ir9:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    424571 8ir9:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    424572 8ir9:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    424573 8ir9:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    424574 8ir9:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    424575 8ir9:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    424576 8ir9:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    424577 8ir9:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    424578 8ir9:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    424579 8ir9:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    424580 8ir9:c (2.2) BS01 OEX ? GO:0005737 ... D0VWR7 38297122
    424581 8ir9:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    424582 8ir9:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    424583 8ir9:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    424584 8ir9:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    424585 8ir9:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    424586 8ir9:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    424587 8ir9:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    424588 8ir9:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    424589 8ir9:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    424590 8ir9:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    424591 8ir9:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    424592 8ir9:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    424593 8ir9:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    424594 8ir9:d (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424595 8ir9:d (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424596 8ir9:d (2.2) BS04 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424597 8ir9:d (2.2) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424598 8ir9:d (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424599 8ir9:d (2.2) BS07 BCT 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    424600 8ir9:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218