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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    423601 8iim:A (1.6) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423602 8iin:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423603 8iin:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423604 8iio:A (1.67) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423605 8iip:A (1.63) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423606 8iip:A (1.63) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423607 8iiq:A (2.1) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423608 8iir:A (2.28) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423609 8iis:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423610 8iit:A (1.61) BS01 SF4 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423611 8iit:A (1.61) BS02 URA 3.2.2.27 GO:0004844 ... A0QP43 37283083
    423612 8iiy:A (2.15) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423613 8iiy:A (2.15) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423614 8iiy:A (2.15) BS05 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423615 8iiy:A (2.15) BS06 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423616 8iiz:A (2.1) BS03 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423617 8iiz:A (2.1) BS04 GLC ? GO:0005515 ... O95619
    P0AEX9    		 37844223
    423618 8ij6:A (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423619 8ij6:B (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423620 8ij6:C (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423621 8ij6:D (2.28) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423622 8ij9:A (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    423623 8ij9:B (2.04) BS01 GTP 3.6.5.2 GO:0003924 ... P61294 37172719
    423624 8ija:A (2.69) BS01 NIO ? GO:0004930 ... Q8TDS4 38012147
    423625 8ijb:A (3.23) BS01 OJX ? GO:0004930 ... Q8TDS4 38012147
    423626 8ijd:A (3.25) BS01 FI7 ? GO:0004930 ... Q8TDS4 38012147
    423627 8ijg:A (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423628 8ijg:B (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423629 8ijg:C (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423630 8ijg:D (2.27) BS01 NAP ? GO:0000166 ... F2LIG4 N/A
    423631 8ijk:A (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    423632 8ijk:A (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    423633 8ijk:B (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    423634 8ijk:B (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    423635 8ijk:C (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    423636 8ijk:C (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    423637 8ijk:D (3.4) BS01 7PN ? GO:0005216 ... O43526 38167918
    423638 8ijk:D (3.4) BS02 7PN ? GO:0005216 ... O43526 38167918
    423639 8ijl:A (2.62) BS01 ALF 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423640 8ijl:A (2.62) BS03 ADP 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423641 8ijl:A (2.62) BS04 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423642 8ijl:A (2.62) BS05 Q7G 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423643 8ijl:A (2.62) BS06 Q7G 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423644 8ijl:B (2.62) BS01 CLR ? GO:0001666 ... P07340 37482134
    423645 8ijl:B (2.62) BS02 Q7G ? GO:0001666 ... P07340 37482134
    423646 8ijm:A (3.13) BS01 ACP 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    423647 8ijm:B (3.13) BS01 CLR ? GO:0001666 ... P07340 37482134
    423648 8ijn:A (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    423649 8ijn:A (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    423650 8ijn:A (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    423651 8ijn:B (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 20385840
    423652 8ijn:B (1.8) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    423653 8ijn:C (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    423654 8ijn:M (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    423655 8ijn:N (1.8) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    423656 8ijn:N (1.8) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 20385840
    423657 8ijn:N (1.8) BS03 NO 7.1.1.9 GO:0004129 ... P00396 20385840
    423658 8ijn:O (1.8) BS01 CUA 7.1.1.9 GO:0004129 ... P68530 20385840
    423659 8ijn:O (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P68530 20385840
    423660 8ijn:P (1.8) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    423661 8ijn:P (1.8) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 20385840
    423662 8ijn:T (1.8) BS01 DMU ? GO:0005743 ... P07471 20385840
    423663 8ijn:W (1.8) BS01 DMU ? GO:0006123 ... P07470 20385840
    423664 8ijn:Z (1.8) BS01 DMU ? GO:0006123 ... P10175 20385840
    423665 8ijq:A (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423666 8ijq:B (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423667 8ijq:C (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423668 8ijq:D (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423669 8ijq:E (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423670 8ijq:F (3.45) BS01 16C 2.7.8.- GO:0016780 ... Q96LT4 38388831
    423671 8ijr:A (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423672 8ijr:A (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423673 8ijr:B (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423674 8ijr:B (3.29) BS02 OPE 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423675 8ijr:C (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423676 8ijr:D (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423677 8ijr:E (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423678 8ijr:F (3.29) BS01 Z0P 2.7.8.- GO:0000139 ... Q96LT4 38388831
    423679 8ijv:A (2.1) BS02 PWI 7.2.2.19 GO:0000166 ... P19156 37726448
    423680 8ijv:B (2.1) BS01 CLR ? GO:0001671 ... P18434 37726448
    423681 8ijv:B (2.1) BS02 CLR ? GO:0001671 ... P18434 37726448
    423682 8ijw:A (2.19) BS02 PXR 7.2.2.19 GO:0000166 ... P19156 37726448
    423683 8ijw:B (2.19) BS01 CLR ? GO:0001671 ... P18434 37726448
    423684 8ijw:B (2.19) BS02 CLR ? GO:0001671 ... P18434 37726448
    423685 8ijx:A (2.08) BS02 PZ0 7.2.2.19 GO:0000166 ... P19156 37726448
    423686 8ijx:B (2.08) BS01 CLR ? GO:0001671 ... P18434 37726448
    423687 8ijy:A (2.38) BS01 SF4 N/A N/A Q31P18 N/A
    423688 8ijy:A (2.38) BS02 HDF N/A N/A Q31P18 N/A
    423689 8ijy:A (2.38) BS03 FAD N/A N/A Q31P18 N/A
    423690 8ik2:A (2.151) BS01 5UF 2.3.1.- GO:0006629 ... Q51559 N/A
    423691 8ik3:A (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423692 8ik3:C (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423693 8ik3:E (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423694 8ik3:F (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423695 8ik3:G (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423696 8ik3:H (3.3) BS01 1SY ? GO:0000045 ... Q86WV6
    Q9HYC4    		 37086726
    423697 8ikg:R (3.4) BS01 Q2B ? N/A P21554 38830102
    423698 8ikh:R (3.3) BS01 Q2L ? N/A P21554 38830102
    423699 8ikt:B (2.6) BS01 3CN N/A N/A P62987 39221915
    423700 8ikx:A (1.5) BS01 MAN ? GO:0004553 ... Q9LYJ5 38359129
    423701 8ikz:A (1.75) BS02 FES 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    423702 8il4:A (3.355) BS01 FAD ? GO:0000166 ... A0A5C3NW19 N/A
    423703 8il4:B (3.355) BS01 FAD ? GO:0000166 ... A0A5C3NW19 N/A
    423704 8il4:C (3.355) BS01 FAD ? GO:0000166 ... A0A5C3NW19 N/A
    423705 8il4:D (3.355) BS01 FAD ? GO:0000166 ... A0A5C3NW19 N/A
    423706 8il5:A (2.50006) BS01 FAD 1.1.3.13 GO:0000166 ... A0A977TIR6 N/A
    423707 8il5:B (2.50006) BS01 FAD 1.1.3.13 GO:0000166 ... A0A977TIR6 N/A
    423708 8il9:A (2.16) BS01 FMN 2.7.11.1 N/A A0A1Y1HNG4 N/A
    423709 8ila:A (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    423710 8ila:A (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    423711 8ila:B (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    423712 8ila:B (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    423713 8ila:C (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    423714 8ila:C (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    423715 8ila:D (2.79) BS01 GDP ? GO:0016757 ... A9Y8T1 37272735
    423716 8ila:D (2.79) BS02 Q3L ? GO:0016757 ... A9Y8T1 37272735
    423717 8ild:A (2.25) BS02 GTP 2.7.7.7 GO:0003677 ... P42494 37958741
    423718 8ild:B (2.25) BS02 GTP 2.7.7.7 GO:0003677 ... P42494 37958741
    423719 8ile:A (3.0) BS04 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    423720 8ile:B (3.0) BS05 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    423721 8ilf:A (2.3) BS03 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    423722 8ilf:B (2.3) BS06 7Q6 2.7.7.7 GO:0003677 ... P42494 37958741
    423723 8ilh:A (2.1) BS04 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    423724 8ilh:B (2.1) BS02 8EB 2.7.7.7 GO:0003677 ... P42494 37958741
    423725 8ilh:C (2.1) BS05 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    423726 8ilh:D (2.1) BS04 GMS 2.7.7.7 GO:0003677 ... P42494 37958741
    423727 8ill:B (2.2) BS01 GLC N/A GO:0006091 ... N/A 38036853
    423728 8ilr:A (3.05) BS01 7TZ 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37585458
    423729 8ils:A (3.1) BS01 7U5 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37585458
    423730 8ilu:A (1.8) BS01 Q1L ? GO:0030246 ... P16110 38394996
    423731 8ilu:B (1.8) BS01 Q1L ? GO:0030246 ... P16110 38394996
    423732 8ilv:A (3.19) BS01 L2V 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 37585458
    423733 8im2:A (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423734 8im2:B (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423735 8im2:C (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423736 8im2:D (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423737 8im2:E (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423738 8im2:F (2.81) BS02 NTD 1.13.11.27 GO:0000139 ... P32754 37794595
    423739 8im3:A (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423740 8im3:B (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423741 8im3:C (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423742 8im3:D (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423743 8im3:E (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423744 8im3:F (2.78) BS02 92U 1.13.11.27 GO:0000139 ... P32754 37794595
    423745 8im6:A (2.01) BS01 80I 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X1 36965419
    423746 8im6:B (2.01) BS01 80I 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0C6X1 36965419
    423747 8im7:C (3.4) BS01 CLR ? GO:0000139 ... Q96BI3 37759382
    423748 8im7:C (3.4) BS02 CLR ? GO:0000139 ... Q96BI3 37759382
    423749 8ime:A (2.63) BS01 0XE 2.7.7.86 N/A Q8N884 37666112
    423750 8ime:B (2.63) BS01 0XE 2.7.7.86 N/A Q8N884 37666112
    423751 8imf:B (2.4) BS01 3WL 2.7.7.86 N/A Q8N884 37666112
    423752 8img:B (1.8) BS01 7XZ 2.7.7.86 N/A Q8N884 37666112
    423753 8imu:A (1.93) BS01 FES 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    423754 8imu:B (1.93) BS01 FES 4.2.1.9 GO:0003824 ... Q9LIR4 N/A
    423755 8imx:G (2.85) BS02 Y01 ? GO:0003923 ... O43292 37684232
    423756 8imx:G (2.85) BS03 6OU ? GO:0003923 ... O43292 37684232
    423757 8imx:G (2.85) BS04 6OU ? GO:0003923 ... O43292 37684232
    423758 8imx:G (2.85) BS05 Y01 ? GO:0003923 ... O43292 37684232
    423759 8imx:G (2.85) BS06 Y01 ? GO:0003923 ... O43292 37684232
    423760 8imx:G (2.85) BS07 Y01 ? GO:0003923 ... O43292 37684232
    423761 8imx:G (2.85) BS08 AJP ? GO:0003923 ... O43292 37684232
    423762 8imx:G (2.85) BS09 80Y ? GO:0003923 ... O43292 37684232
    423763 8imx:S (2.85) BS02 LBN ? GO:0005515 ... Q96S52 37684232
    423764 8imx:S (2.85) BS03 80T ? GO:0005515 ... Q96S52 37684232
    423765 8imx:T (2.85) BS02 81Q ? GO:0006091 ... Q969N2
    Q9U6Y3    		 37684232
    423766 8imx:U (2.85) BS01 6OU ? GO:0005515 ... Q9H490 37684232
    423767 8imx:U (2.85) BS02 80T ? GO:0005515 ... Q9H490 37684232
    423768 8imx:U (2.85) BS03 Y01 ? GO:0005515 ... Q9H490 37684232
    423769 8imx:U (2.85) BS04 Y01 ? GO:0005515 ... Q9H490 37684232
    423770 8imx:U (2.85) BS05 Y01 ? GO:0005515 ... Q9H490 37684232
    423771 8imx:U (2.85) BS06 Y01 ? GO:0005515 ... Q9H490 37684232
    423772 8imx:U (2.85) BS07 81Q ? GO:0005515 ... Q9H490 37684232
    423773 8imy:D (3.22) BS01 Y01 ? GO:0001916 ... Q9BZM5 37684232
    423774 8imy:G (3.22) BS01 AJP ? GO:0003923 ... O43292 37684232
    423775 8imy:G (3.22) BS02 6OU ? GO:0003923 ... O43292 37684232
    423776 8imy:G (3.22) BS03 6OU ? GO:0003923 ... O43292 37684232
    423777 8imy:G (3.22) BS04 Y01 ? GO:0003923 ... O43292 37684232
    423778 8imy:G (3.22) BS05 Y01 ? GO:0003923 ... O43292 37684232
    423779 8imy:G (3.22) BS07 05E ? GO:0003923 ... O43292 37684232
    423780 8imy:S (3.22) BS01 LBN ? GO:0005515 ... Q96S52 37684232
    423781 8imy:S (3.22) BS02 80T ? GO:0005515 ... Q96S52 37684232
    423782 8imy:S (3.22) BS03 6OU ? GO:0005515 ... Q96S52 37684232
    423783 8imy:S (3.22) BS04 Y01 ? GO:0005515 ... Q96S52 37684232
    423784 8imy:T (3.22) BS01 81Q ? GO:0006091 ... Q969N2 37684232
    423785 8imy:T (3.22) BS02 PA1 ? GO:0006091 ... Q969N2 37684232
    423786 8imy:U (3.22) BS01 6OU ? GO:0005515 ... Q9H490 37684232
    423787 8imy:U (3.22) BS02 Y01 ? GO:0005515 ... Q9H490 37684232
    423788 8imy:U (3.22) BS03 Y01 ? GO:0005515 ... Q9H490 37684232
    423789 8imy:U (3.22) BS04 Y01 ? GO:0005515 ... Q9H490 37684232
    423790 8imy:U (3.22) BS05 Y01 ? GO:0005515 ... Q9H490 37684232
    423791 8imy:U (3.22) BS06 Y01 ? GO:0005515 ... Q9H490 37684232
    423792 8imy:U (3.22) BS07 Y01 ? GO:0005515 ... Q9H490 37684232
    423793 8imy:U (3.22) BS08 Y01 ? GO:0005515 ... Q9H490 37684232
    423794 8imy:U (3.22) BS09 Y01 ? GO:0005515 ... Q9H490 37684232
    423795 8imy:U (3.22) BS10 6OU ? GO:0005515 ... Q9H490 37684232
    423796 8imy:U (3.22) BS11 LBN ? GO:0005515 ... Q9H490 37684232
    423797 8imy:U (3.22) BS12 81Q ? GO:0005515 ... Q9H490 37684232
    423798 8imy:U (3.22) BS13 80T ? GO:0005515 ... Q9H490 37684232
    423799 8in6:A (1.9) BS01 GGP ? GO:0005576 ... A0A1B4XTR1 37910430
    423800 8in7:A (1.9) BS01 UPG 2.4.1.- GO:0008194 ... W8JMV4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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