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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    423001 8iai:C (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423002 8iai:D (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423003 8iai:E (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423004 8iai:F (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423005 8iai:G (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423006 8iai:H (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423007 8iai:I (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423008 8iai:J (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423009 8iai:K (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423010 8iaj:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8    		 38285738
    423011 8iaj:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423012 8iaj:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    423013 8iaj:D (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    423014 8iaj:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8    		 38285738
    423015 8iaj:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423016 8iaj:F (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    423017 8iaj:H (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    423018 8iak:A (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8    		 38285738
    423019 8iak:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423020 8iak:E (3.1) BS01 PLP 2.3.1.50 GO:0009058 ... P25045
    Q94IB8    		 38285738
    423021 8iak:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423022 8iam:B (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423023 8iam:B (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    423024 8iam:D (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    423025 8iam:F (3.1) BS01 PLP 2.3.1.50 GO:0004758 ... P40970 38285738
    423026 8iam:F (3.1) BS02 Z1T 2.3.1.50 GO:0004758 ... P40970 38285738
    423027 8iam:H (3.1) BS01 Z1T ? GO:0003674 ... Q06144 38285738
    423028 8iao:AC (4.2) BS01 HEM N/A N/A P00158 N/A
    423029 8iao:AC (4.2) BS02 HEM N/A N/A P00158 N/A
    423030 8iao:AC (4.2) BS03 U10 N/A N/A P00158 N/A
    423031 8iao:AC (4.2) BS04 UQ6 N/A N/A P00158 N/A
    423032 8iao:AD (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    423033 8iao:Ac (4.2) BS01 HEM N/A N/A P00158 N/A
    423034 8iao:Ac (4.2) BS02 HEM N/A N/A P00158 N/A
    423035 8iao:Ac (4.2) BS03 U10 N/A N/A P00158 N/A
    423036 8iao:Ac (4.2) BS04 UQ6 N/A N/A P00158 N/A
    423037 8iao:Ad (4.2) BS01 HEC N/A N/A Q9D0M3 N/A
    423038 8iao:B (4.2) BS01 SF4 N/A N/A Q9DC70 N/A
    423039 8iao:B (4.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    423040 8iao:B (4.2) BS03 UQ9 N/A N/A Q9DC70 N/A
    423041 8iao:D (4.2) BS01 SF4 N/A N/A Q91WD5 N/A
    423042 8iao:D (4.2) BS02 UQ1 N/A N/A Q91WD5 N/A
    423043 8iao:E (4.2) BS02 FES N/A N/A Q9D6J6 N/A
    423044 8iao:F (4.2) BS02 FMN N/A N/A Q91YT0 N/A
    423045 8iao:F (4.2) BS03 SF4 N/A N/A Q91YT0 N/A
    423046 8iao:G (4.2) BS01 SF4 N/A N/A Q91VD9 N/A
    423047 8iao:G (4.2) BS02 SF4 N/A N/A Q91VD9 N/A
    423048 8iao:G (4.2) BS03 FES N/A N/A Q91VD9 N/A
    423049 8iao:H (4.2) BS01 UQ9 N/A N/A P03888 N/A
    423050 8iao:I (4.2) BS01 SF4 N/A N/A Q8K3J1 N/A
    423051 8iao:I (4.2) BS02 SF4 N/A N/A Q8K3J1 N/A
    423052 8iao:O (4.2) BS01 ADP N/A N/A Q99LC3 N/A
    423053 8iao:P (4.2) BS01 NDP N/A N/A Q9DC69 N/A
    423054 8iao:W (4.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    423055 8iao:n (4.2) BS01 EHZ N/A N/A Q9CQJ8 N/A
    423056 8iap:B (3.2) BS01 SF4 N/A N/A Q9DC70 N/A
    423057 8iap:B (3.2) BS02 UQ1 N/A N/A Q9DC70 N/A
    423058 8iap:B (3.2) BS03 UQ9 N/A N/A Q9DC70 N/A
    423059 8iap:D (3.2) BS01 SF4 N/A N/A Q91WD5 N/A
    423060 8iap:D (3.2) BS02 UQ1 N/A N/A Q91WD5 N/A
    423061 8iap:E (3.2) BS02 FES N/A N/A Q9D6J6 N/A
    423062 8iap:F (3.2) BS02 FMN N/A N/A Q91YT0 N/A
    423063 8iap:F (3.2) BS03 SF4 N/A N/A Q91YT0 N/A
    423064 8iap:G (3.2) BS01 SF4 N/A N/A Q91VD9 N/A
    423065 8iap:G (3.2) BS02 SF4 N/A N/A Q91VD9 N/A
    423066 8iap:G (3.2) BS03 FES N/A N/A Q91VD9 N/A
    423067 8iap:H (3.2) BS01 UQ9 N/A N/A P03888 N/A
    423068 8iap:I (3.2) BS01 SF4 N/A N/A Q8K3J1 N/A
    423069 8iap:I (3.2) BS02 SF4 N/A N/A Q8K3J1 N/A
    423070 8iap:P (3.2) BS01 NDP N/A N/A Q9DC69 N/A
    423071 8iap:W (3.2) BS01 EHZ N/A N/A Q9CQZ5 N/A
    423072 8iaq:O (3.4) BS01 ADP N/A N/A Q99LC3 N/A
    423073 8iaq:n (3.4) BS01 EHZ N/A N/A Q9CQJ8 N/A
    423074 8iar:AC (3.4) BS01 HEM N/A N/A P00158 N/A
    423075 8iar:AC (3.4) BS02 HEM N/A N/A P00158 N/A
    423076 8iar:AC (3.4) BS03 U10 N/A N/A P00158 N/A
    423077 8iar:AC (3.4) BS04 UQ6 N/A N/A P00158 N/A
    423078 8iar:AD (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    423079 8iar:Ac (3.4) BS01 HEM N/A N/A P00158 N/A
    423080 8iar:Ac (3.4) BS02 HEM N/A N/A P00158 N/A
    423081 8iar:Ac (3.4) BS03 U10 N/A N/A P00158 N/A
    423082 8iar:Ac (3.4) BS04 UQ6 N/A N/A P00158 N/A
    423083 8iar:Ad (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    423084 8iat:A (1.8) BS01 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423085 8iat:A (1.8) BS02 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423086 8iat:B (1.8) BS01 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423087 8iat:B (1.8) BS02 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423088 8iat:C (1.8) BS01 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423089 8iat:C (1.8) BS02 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423090 8iat:D (1.8) BS01 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423091 8iat:D (1.8) BS02 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423092 8iau:A (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423093 8iau:A (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423094 8iau:B (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423095 8iau:B (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423096 8iau:C (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423097 8iau:C (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423098 8iau:D (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423099 8iau:D (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423100 8iau:E (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423101 8iau:F (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423102 8iau:F (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423103 8iau:G (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423104 8iau:G (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423105 8iau:H (2.0) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423106 8iau:H (2.0) BS03 OXL 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423107 8iav:A (2.59) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423108 8iav:B (2.59) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423109 8iav:C (2.59) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423110 8iav:D (2.59) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423111 8iaw:A (2.89) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423112 8iaw:B (2.89) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423113 8iax:A (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423114 8iax:A (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423115 8iax:B (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423116 8iax:B (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423117 8iax:C (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423118 8iax:C (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423119 8iax:D (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423120 8iax:D (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423121 8iax:E (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423122 8iax:E (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423123 8iax:F (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423124 8iax:F (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423125 8iax:G (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423126 8iax:G (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423127 8iax:H (1.8) BS01 FBP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423128 8iax:H (1.8) BS02 PEP 2.7.1.40 GO:0000287 ... Q8DQ84 37286036
    423129 8ib2:B (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423130 8ib2:C (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423131 8ib2:D (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423132 8ib2:E (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423133 8ib2:F (3.8) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423134 8ib4:AC (4.3) BS01 HEM N/A N/A P00158 N/A
    423135 8ib4:AC (4.3) BS02 HEM N/A N/A P00158 N/A
    423136 8ib4:AC (4.3) BS03 U10 N/A N/A P00158 N/A
    423137 8ib4:AC (4.3) BS04 UQ6 N/A N/A P00158 N/A
    423138 8ib4:AD (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    423139 8ib4:Ac (4.3) BS01 HEM N/A N/A P00158 N/A
    423140 8ib4:Ac (4.3) BS02 HEM N/A N/A P00158 N/A
    423141 8ib4:Ac (4.3) BS03 U10 N/A N/A P00158 N/A
    423142 8ib4:Ac (4.3) BS04 UQ6 N/A N/A P00158 N/A
    423143 8ib4:Ad (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    423144 8ib4:B (4.3) BS01 SF4 N/A N/A Q9DC70 N/A
    423145 8ib4:B (4.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    423146 8ib4:B (4.3) BS03 UQ9 N/A N/A Q9DC70 N/A
    423147 8ib4:D (4.3) BS01 SF4 N/A N/A Q91WD5 N/A
    423148 8ib4:D (4.3) BS02 UQ1 N/A N/A Q91WD5 N/A
    423149 8ib4:E (4.3) BS02 FES N/A N/A Q9D6J6 N/A
    423150 8ib4:F (4.3) BS02 FMN N/A N/A Q91YT0 N/A
    423151 8ib4:F (4.3) BS03 SF4 N/A N/A Q91YT0 N/A
    423152 8ib4:G (4.3) BS01 SF4 N/A N/A Q91VD9 N/A
    423153 8ib4:G (4.3) BS02 SF4 N/A N/A Q91VD9 N/A
    423154 8ib4:G (4.3) BS03 FES N/A N/A Q91VD9 N/A
    423155 8ib4:H (4.3) BS01 UQ9 N/A N/A P03888 N/A
    423156 8ib4:I (4.3) BS01 SF4 N/A N/A Q8K3J1 N/A
    423157 8ib4:I (4.3) BS02 SF4 N/A N/A Q8K3J1 N/A
    423158 8ib4:O (4.3) BS01 ADP N/A N/A Q99LC3 N/A
    423159 8ib4:P (4.3) BS01 NDP N/A N/A Q9DC69 N/A
    423160 8ib4:W (4.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    423161 8ib4:n (4.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    423162 8ib5:B (3.3) BS01 SF4 N/A N/A Q9DC70 N/A
    423163 8ib5:B (3.3) BS02 UQ1 N/A N/A Q9DC70 N/A
    423164 8ib5:B (3.3) BS03 UQ9 N/A N/A Q9DC70 N/A
    423165 8ib5:D (3.3) BS01 SF4 N/A N/A Q91WD5 N/A
    423166 8ib5:D (3.3) BS02 UQ1 N/A N/A Q91WD5 N/A
    423167 8ib5:E (3.3) BS02 FES N/A N/A Q9D6J6 N/A
    423168 8ib5:F (3.3) BS02 FMN N/A N/A Q91YT0 N/A
    423169 8ib5:F (3.3) BS03 SF4 N/A N/A Q91YT0 N/A
    423170 8ib5:G (3.3) BS01 SF4 N/A N/A Q91VD9 N/A
    423171 8ib5:G (3.3) BS02 SF4 N/A N/A Q91VD9 N/A
    423172 8ib5:G (3.3) BS03 FES N/A N/A Q91VD9 N/A
    423173 8ib5:H (3.3) BS01 UQ9 N/A N/A P03888 N/A
    423174 8ib5:I (3.3) BS01 SF4 N/A N/A Q8K3J1 N/A
    423175 8ib5:I (3.3) BS02 SF4 N/A N/A Q8K3J1 N/A
    423176 8ib5:P (3.3) BS01 NDP N/A N/A Q9DC69 N/A
    423177 8ib5:W (3.3) BS01 EHZ N/A N/A Q9CQZ5 N/A
    423178 8ib6:O (3.3) BS01 ADP N/A N/A Q99LC3 N/A
    423179 8ib6:n (3.3) BS01 EHZ N/A N/A Q9CQJ8 N/A
    423180 8ib7:AC (3.4) BS01 HEM N/A N/A P00158 N/A
    423181 8ib7:AC (3.4) BS02 HEM N/A N/A P00158 N/A
    423182 8ib7:AC (3.4) BS03 U10 N/A N/A P00158 N/A
    423183 8ib7:AC (3.4) BS04 UQ6 N/A N/A P00158 N/A
    423184 8ib7:AD (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    423185 8ib7:Ac (3.4) BS01 HEM N/A N/A P00158 N/A
    423186 8ib7:Ac (3.4) BS02 HEM N/A N/A P00158 N/A
    423187 8ib7:Ac (3.4) BS03 U10 N/A N/A P00158 N/A
    423188 8ib7:Ac (3.4) BS04 UQ6 N/A N/A P00158 N/A
    423189 8ib7:Ad (3.4) BS01 HEC N/A N/A Q9D0M3 N/A
    423190 8ib9:AC (4.3) BS01 HEM N/A N/A P00158 N/A
    423191 8ib9:AC (4.3) BS02 HEM N/A N/A P00158 N/A
    423192 8ib9:AC (4.3) BS03 U10 N/A N/A P00158 N/A
    423193 8ib9:AC (4.3) BS04 UQ6 N/A N/A P00158 N/A
    423194 8ib9:AD (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    423195 8ib9:Ac (4.3) BS01 HEM N/A N/A P00158 N/A
    423196 8ib9:Ac (4.3) BS02 HEM N/A N/A P00158 N/A
    423197 8ib9:Ac (4.3) BS03 U10 N/A N/A P00158 N/A
    423198 8ib9:Ac (4.3) BS04 UQ6 N/A N/A P00158 N/A
    423199 8ib9:Ad (4.3) BS01 HEC N/A N/A Q9D0M3 N/A
    423200 8ib9:B (4.3) BS01 SF4 N/A N/A Q9DC70 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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