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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422801 8i8d:E (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422802 8i8d:F (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422803 8i8d:F (2.51) BS02 AMP ? N/A Q00IB3 N/A
    422804 8i8d:F (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422805 8i8e:A (2.63) BS01 AMP ? N/A Q00IB3 N/A
    422806 8i8e:A (2.63) BS02 PNS ? N/A Q00IB3 N/A
    422807 8i8e:B (2.63) BS01 AMP ? N/A Q00IB3 N/A
    422808 8i8e:B (2.63) BS02 PNS ? N/A Q00IB3 N/A
    422809 8i8e:C (2.63) BS01 AMP ? N/A Q00IB3 N/A
    422810 8i8e:C (2.63) BS02 PNS ? N/A Q00IB3 N/A
    422811 8i8e:D (2.63) BS01 AMP ? N/A Q00IB3 N/A
    422812 8i8e:D (2.63) BS02 PNS ? N/A Q00IB3 N/A
    422813 8i8e:E (2.63) BS01 AMP ? N/A Q00IB3 N/A
    422814 8i8e:E (2.63) BS02 PNS ? N/A Q00IB3 N/A
    422815 8i8e:F (2.63) BS01 PNS ? N/A Q00IB3 N/A
    422816 8i8e:F (2.63) BS02 AMP ? N/A Q00IB3 N/A
    422817 8i8f:A (1.89) BS03 OL6 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    422818 8i8f:A (1.89) BS04 OL6 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    422819 8i8f:B (1.89) BS01 OL6 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    422820 8i8f:B (1.89) BS04 OL6 3.5.2.6 GO:0008800 ... E9NWK5 38336327
    422821 8i8g:A (3.0) BS02 ATP 2.7.1.103 GO:0005524 ... D2B3F1 38114770
    422822 8i8h:A (2.02) BS02 ATP 2.7.1.103 GO:0005524 ... D2B3F1 38114770
    422823 8i8j:A (2.07) BS01 COA 2.7.7.3 GO:0003824 ... A4W515 N/A
    422824 8i8j:A (2.07) BS02 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422825 8i8j:B (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422826 8i8j:C (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422827 8i8j:D (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422828 8i8j:E (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422829 8i8j:E (2.07) BS02 COA 2.7.7.3 GO:0003824 ... A4W515 N/A
    422830 8i8j:F (2.07) BS01 PAE 2.7.7.3 GO:0003824 ... A4W515 N/A
    422831 8i8k:A () BS01 COA 2.7.7.3 N/A N/A N/A
    422832 8i8k:A () BS02 PAE 2.7.7.3 N/A N/A N/A
    422833 8i8k:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    422834 8i8k:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    422835 8i8k:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    422836 8i8k:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    422837 8i8k:E () BS02 COA 2.7.7.3 N/A N/A N/A
    422838 8i8k:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    422839 8i8l:A () BS01 COA 2.7.7.3 N/A N/A N/A
    422840 8i8l:A () BS02 PAE 2.7.7.3 N/A N/A N/A
    422841 8i8l:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    422842 8i8l:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    422843 8i8l:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    422844 8i8l:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    422845 8i8l:E () BS02 COA 2.7.7.3 N/A N/A N/A
    422846 8i8l:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    422847 8i8m:A () BS01 COA N/A N/A N/A N/A
    422848 8i8m:A () BS02 PAE N/A N/A N/A N/A
    422849 8i8m:B () BS01 PAE N/A N/A N/A N/A
    422850 8i8m:C () BS01 PAE N/A N/A N/A N/A
    422851 8i8m:D () BS01 PAE N/A N/A N/A N/A
    422852 8i8m:E () BS01 PAE N/A N/A N/A N/A
    422853 8i8m:E () BS02 COA N/A N/A N/A N/A
    422854 8i8m:F () BS01 PAE N/A N/A N/A N/A
    422855 8i8n:A () BS01 PAE 2.7.7.3 N/A N/A N/A
    422856 8i8n:A () BS02 COD 2.7.7.3 N/A N/A N/A
    422857 8i8n:B () BS01 PAE 2.7.7.3 N/A N/A N/A
    422858 8i8n:C () BS01 PAE 2.7.7.3 N/A N/A N/A
    422859 8i8n:D () BS01 PAE 2.7.7.3 N/A N/A N/A
    422860 8i8n:E () BS01 PAE 2.7.7.3 N/A N/A N/A
    422861 8i8n:E () BS02 COD 2.7.7.3 N/A N/A N/A
    422862 8i8n:F () BS01 PAE 2.7.7.3 N/A N/A N/A
    422863 8i8o:A () BS01 PAE N/A N/A N/A N/A
    422864 8i8o:A () BS02 COD N/A N/A N/A N/A
    422865 8i8o:B () BS01 PAE N/A N/A N/A N/A
    422866 8i8o:C () BS01 PAE N/A N/A N/A N/A
    422867 8i8o:D () BS01 PAE N/A N/A N/A N/A
    422868 8i8o:E () BS01 PAE N/A N/A N/A N/A
    422869 8i8o:E () BS02 COD N/A N/A N/A N/A
    422870 8i8o:F () BS01 PAE N/A N/A N/A N/A
    422871 8i8p:A (2.19) BS01 COD 2.7.7.3 GO:0003824 ... D0C9M9 N/A
    422872 8i8r:A (2.93) BS01 KDL ? GO:0001618 ... P06996 38092770
    422873 8i8r:A (2.93) BS02 KDL ? GO:0001618 ... P06996 38092770
    422874 8i8r:B (2.93) BS01 KDL ? GO:0001618 ... P06996 38092770
    422875 8i8r:B (2.93) BS02 KDL ? GO:0001618 ... P06996 38092770
    422876 8i8r:C (2.93) BS01 KDL ? GO:0001618 ... P06996 38092770
    422877 8i8r:C (2.93) BS02 KDL ? GO:0001618 ... P06996 38092770
    422878 8i8r:D (2.93) BS01 KDL ? GO:0005515 ... P76506 38092770
    422879 8i8s:A (1.42) BS01 8OG 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 36914375
    422880 8i8s:B (1.42) BS01 8OG 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 36914375
    422881 8i8t:A (1.22) BS01 IGU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 36914375
    422882 8i8t:B (1.22) BS01 IGU 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 36914375
    422883 8i8x:A (3.25) BS01 KDL ? GO:0001618 ... P06996 38092770
    422884 8i8x:A (3.25) BS02 KDL ? GO:0001618 ... P06996 38092770
    422885 8i8x:B (3.25) BS01 KDL ? GO:0001618 ... P06996 38092770
    422886 8i8x:B (3.25) BS02 KDL ? GO:0001618 ... P06996 38092770
    422887 8i8x:C (3.25) BS01 KDL ? GO:0001618 ... P06996 38092770
    422888 8i8x:C (3.25) BS02 KDL ? GO:0001618 ... P06996 38092770
    422889 8i90:A (2.1) BS01 UPG 2.4.1.- GO:0008194 ... A0A292GEP7 38346547
    422890 8i90:B (2.1) BS01 UPG 2.4.1.- GO:0008194 ... A0A292GEP7 38346547
    422891 8i91:B (3.3) BS01 PRO ? GO:0005298 ... Q9NP91 37684251
    422892 8i91:D (3.3) BS01 PRO ? GO:0005298 ... Q9NP91 37684251
    422893 8i92:B (3.2) BS01 GLN ? GO:0003333 ... Q695T7 37684251
    422894 8i92:D (3.2) BS01 GLN ? GO:0003333 ... Q695T7 37684251
    422895 8i93:B (3.1) BS01 MET ? GO:0003333 ... Q695T7 37684251
    422896 8i93:D (3.1) BS01 MET ? GO:0003333 ... Q695T7 37684251
    422897 8i94:A (2.43) BS01 LU2 2.4.1.- GO:0008194 ... A0A292GEP7 38346547
    422898 8i94:B (2.43) BS01 LU2 2.4.1.- GO:0008194 ... A0A292GEP7 38346547
    422899 8i96:A (3.2) BS01 GJX N/A N/A B3Y653 N/A
    422900 8i96:A (3.2) BS02 GJX N/A N/A B3Y653 N/A
    422901 8i96:B (3.2) BS01 GJX N/A N/A B3Y653 N/A
    422902 8i96:B (3.2) BS02 GJX N/A N/A B3Y653 N/A
    422903 8i98:A (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422904 8i98:B (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422905 8i98:C (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422906 8i98:D (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422907 8i98:E (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422908 8i98:F (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422909 8i98:G (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422910 8i98:H (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422911 8i98:I (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422912 8i98:J (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422913 8i98:K (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422914 8i98:L (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422915 8i98:M (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422916 8i98:N (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422917 8i98:O (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422918 8i98:P (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422919 8i98:Q (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422920 8i98:R (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422921 8i98:S (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422922 8i98:T (2.54) BS01 FMN ? GO:0000166 ... Q8DMN3 N/A
    422923 8i9i:A (3.3) BS01 GLU 6.1.1.17 GO:0000049 ... P04805 N/A
    422924 8i9i:B (3.3) BS01 GLU 6.1.1.17 GO:0000049 ... P04805 N/A
    422925 8i9o:A (2.9) BS01 ADE 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422926 8i9o:A (2.9) BS02 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422927 8i9o:A (2.9) BS03 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422928 8i9o:A (2.9) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422929 8i9o:A (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422930 8i9o:B (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422931 8i9o:B (2.9) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422932 8i9o:B (2.9) BS03 ADE 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422933 8i9o:B (2.9) BS04 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422934 8i9o:B (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422935 8i9o:C (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422936 8i9o:C (2.9) BS02 ADE 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422937 8i9o:C (2.9) BS03 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422938 8i9o:C (2.9) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422939 8i9o:C (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422940 8i9o:D (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422941 8i9o:D (2.9) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422942 8i9o:D (2.9) BS03 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422943 8i9o:D (2.9) BS04 ADE 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422944 8i9o:D (2.9) BS05 ONL 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    422945 8i9t:CH (3.6) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422946 8i9u:A (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    422947 8i9u:C (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    422948 8i9u:D (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    422949 8i9u:F (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    422950 8i9u:H (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    422951 8i9u:I (3.1) BS01 ADP ? GO:0000242 ... P17987 38307855
    422952 8i9u:K (3.1) BS01 ADP ? GO:0002199 ... P49368 38307855
    422953 8i9u:L (3.1) BS01 ADP ? GO:0002199 ... P50991 38307855
    422954 8i9u:N (3.1) BS01 ADP ? GO:0003723 ... P40227 38307855
    422955 8i9u:P (3.1) BS01 ADP ? GO:0002199 ... P50990 38307855
    422956 8i9v:CH (3.1) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422957 8i9w:CH (3.1) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422958 8i9x:CH (2.8) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422959 8i9y:CH (3.1) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422960 8i9z:CH (2.7) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422961 8i9z:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    422962 8ia0:CH (2.7) BS02 GTP ? GO:0003723 ... G0S8F1 37129998
    422963 8ia0:CW (2.7) BS02 ADP 3.6.4.13 GO:0003676 ... G0RYG4 37129998
    422964 8ia5:A (1.93) BS02 NUT ? GO:0005634 ... O15151 N/A
    422965 8iaa:A (2.1) BS01 SAH ? GO:0003824 ... Q9ALN2 37703985
    422966 8iaa:B (2.1) BS01 SAH ? GO:0003824 ... Q9ALN2 37703985
    422967 8iab:A (2.96) BS01 ATP ? GO:0005247 ... P92941 37573431
    422968 8iab:A (2.96) BS02 PIO ? GO:0005247 ... P92941 37573431
    422969 8iab:A (2.96) BS03 CL ? GO:0005247 ... P92941 37573431
    422970 8iab:A (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    422971 8iab:A (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    422972 8iab:A (2.96) BS06 PIO ? GO:0005247 ... P92941 37573431
    422973 8iab:B (2.96) BS01 PIO ? GO:0005247 ... P92941 37573431
    422974 8iab:B (2.96) BS02 ATP ? GO:0005247 ... P92941 37573431
    422975 8iab:B (2.96) BS03 PIO ? GO:0005247 ... P92941 37573431
    422976 8iab:B (2.96) BS04 CL ? GO:0005247 ... P92941 37573431
    422977 8iab:B (2.96) BS05 CL ? GO:0005247 ... P92941 37573431
    422978 8iab:B (2.96) BS06 CL ? GO:0005247 ... P92941 37573431
    422979 8iad:A (3.16) BS01 ATP ? GO:0005247 ... P92941 37573431
    422980 8iad:A (3.16) BS02 PIO ? GO:0005247 ... P92941 37573431
    422981 8iad:A (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    422982 8iad:B (3.16) BS01 PIO ? GO:0005247 ... P92941 37573431
    422983 8iad:B (3.16) BS02 ATP ? GO:0005247 ... P92941 37573431
    422984 8iad:B (3.16) BS03 PIO ? GO:0005247 ... P92941 37573431
    422985 8iag:A (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    422986 8iag:B (1.5) BS01 HEM N/A GO:0004601 ... N/A N/A
    422987 8iah:A (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422988 8iah:B (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422989 8iah:C (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422990 8iah:D (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422991 8iah:E (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422992 8iah:F (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422993 8iah:G (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422994 8iah:H (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422995 8iah:I (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422996 8iah:J (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422997 8iah:K (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422998 8iah:L (3.6) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    422999 8iai:A (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    423000 8iai:B (3.5) BS01 ADP 3.6.4.- GO:0005515 ... Q6QAQ1 37044097
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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