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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422601 8i7r:OL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422602 8i7r:PA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422603 8i7r:PB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422604 8i7r:PB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422605 8i7r:PC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422606 8i7r:PD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422607 8i7r:PD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422608 8i7r:PE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422609 8i7r:PF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422610 8i7r:PF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422611 8i7r:PG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422612 8i7r:PH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422613 8i7r:PH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422614 8i7r:PI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422615 8i7r:PJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422616 8i7r:PJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422617 8i7r:PK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422618 8i7r:PL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422619 8i7r:PL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422620 8i7r:PM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422621 8i7r:QB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422622 8i7r:QB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422623 8i7r:QC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422624 8i7r:QD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422625 8i7r:QD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422626 8i7r:QE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422627 8i7r:QF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422628 8i7r:QF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422629 8i7r:QG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422630 8i7r:QH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422631 8i7r:QH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422632 8i7r:QI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422633 8i7r:QJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422634 8i7r:QJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422635 8i7r:QK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422636 8i7r:QL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422637 8i7r:QL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422638 8i7r:QM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422639 8i7r:RB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422640 8i7r:RB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422641 8i7r:RC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422642 8i7r:RD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422643 8i7r:RD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422644 8i7r:RE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422645 8i7r:RF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422646 8i7r:RF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422647 8i7r:RG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422648 8i7r:RH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422649 8i7r:RH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422650 8i7r:RI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422651 8i7r:RJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422652 8i7r:RJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422653 8i7r:RK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422654 8i7r:RL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422655 8i7r:RL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422656 8i7r:RM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422657 8i7r:SB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422658 8i7r:SB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422659 8i7r:SC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422660 8i7r:SD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422661 8i7r:SD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422662 8i7r:SE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422663 8i7r:SF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422664 8i7r:SF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422665 8i7r:SG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422666 8i7r:SH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422667 8i7r:SH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422668 8i7r:SI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422669 8i7r:SJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422670 8i7r:SJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422671 8i7r:SK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422672 8i7r:SL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422673 8i7r:SL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422674 8i7r:SM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422675 8i7r:TB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422676 8i7r:TB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422677 8i7r:TC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422678 8i7r:TD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422679 8i7r:TD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422680 8i7r:TE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422681 8i7r:TF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422682 8i7r:TF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422683 8i7r:TG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422684 8i7r:TH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422685 8i7r:TH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422686 8i7r:TI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422687 8i7r:TJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422688 8i7r:TJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422689 8i7r:TK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422690 8i7r:TL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422691 8i7r:TL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422692 8i7r:TM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422693 8i7r:TN (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422694 8i7r:UA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422695 8i7r:UB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422696 8i7r:UB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422697 8i7r:UC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422698 8i7r:UD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422699 8i7r:UD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422700 8i7r:UE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422701 8i7r:UF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422702 8i7r:UF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422703 8i7r:UG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422704 8i7r:UH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422705 8i7r:UH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422706 8i7r:UI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422707 8i7r:UJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422708 8i7r:UJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422709 8i7r:UK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422710 8i7r:UL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422711 8i7r:VA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422712 8i7r:VB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422713 8i7r:VB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422714 8i7r:VC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422715 8i7r:VD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422716 8i7r:VD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422717 8i7r:VE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422718 8i7r:VF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422719 8i7r:VF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422720 8i7r:VG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422721 8i7r:VH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422722 8i7r:VH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422723 8i7r:VI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422724 8i7r:VJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422725 8i7r:VJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422726 8i7r:VK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422727 8i7r:VL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422728 8i7r:WA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422729 8i7r:WB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422730 8i7r:WB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422731 8i7r:WC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422732 8i7r:WD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422733 8i7r:WD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422734 8i7r:WE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422735 8i7r:WF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422736 8i7r:WF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422737 8i7r:WG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422738 8i7r:WH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422739 8i7r:WH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422740 8i7r:WI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422741 8i7r:WJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422742 8i7r:WJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422743 8i7r:WK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422744 8i7r:WL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422745 8i7u:A (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422746 8i7u:A (2.49) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422747 8i7u:B (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422748 8i7u:C (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422749 8i7u:C (2.49) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422750 8i7u:D (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422751 8i7u:E (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422752 8i7u:E (2.49) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422753 8i7u:F (2.49) BS01 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422754 8i7u:F (2.49) BS02 PLP 2.3.1.47 GO:0008483 ... A0A6B9KSL0 38642679
    422755 8i7v:A (2.77) BS01 OJX ? GO:0001781 ... P0ABE7
    Q8TDS4    		 37932263
    422756 8i7w:A (3.39) BS01 OKL ? GO:0001781 ... P0ABE7
    Q8TDS4    		 37932263
    422757 8i7x:A (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422758 8i7x:A (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422759 8i7x:B (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422760 8i7x:B (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422761 8i7x:C (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422762 8i7x:C (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422763 8i7x:D (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422764 8i7x:D (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422765 8i7x:E (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422766 8i7x:E (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422767 8i7x:F (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422768 8i7x:F (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422769 8i7x:G (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422770 8i7x:G (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422771 8i7x:H (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422772 8i7x:H (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422773 8i7x:I (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422774 8i7x:I (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422775 8i7x:J (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422776 8i7x:J (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422777 8i7x:K (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422778 8i7x:K (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422779 8i7x:L (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422780 8i7x:L (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422781 8i7x:M (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422782 8i7x:M (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422783 8i7x:N (1.99) BS01 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422784 8i7x:N (1.99) BS02 OSR 3.4.21.92 GO:0004176 ... Q16740 37352796
    422785 8i85:A (2.17) BS01 ATP 2.7.1.103 GO:0005524 ... D2B3F1 38114770
    422786 8i86:A (2.23) BS01 GTP 2.7.1.103 GO:0005524 ... D2B3F1 38114770
    422787 8i8d:A (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422788 8i8d:A (2.51) BS02 AMP ? N/A Q00IB3 N/A
    422789 8i8d:A (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422790 8i8d:B (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422791 8i8d:B (2.51) BS02 AMP ? N/A Q00IB3 N/A
    422792 8i8d:B (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422793 8i8d:C (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422794 8i8d:C (2.51) BS02 AMP ? N/A Q00IB3 N/A
    422795 8i8d:C (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422796 8i8d:D (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422797 8i8d:D (2.51) BS02 AMP ? N/A Q00IB3 N/A
    422798 8i8d:D (2.51) BS03 PN7 ? N/A Q00IB3 N/A
    422799 8i8d:E (2.51) BS01 OP3 ? N/A Q00IB3 N/A
    422800 8i8d:E (2.51) BS02 AMP ? N/A Q00IB3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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