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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422201 8i7o:ED (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422202 8i7o:EE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422203 8i7o:EF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422204 8i7o:EF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422205 8i7o:EG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422206 8i7o:EH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422207 8i7o:FD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422208 8i7o:FE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422209 8i7o:FF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422210 8i7o:FF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422211 8i7o:FG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422212 8i7o:FH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422213 8i7o:GD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422214 8i7o:GD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422215 8i7o:GE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422216 8i7o:GF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422217 8i7o:GG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422218 8i7o:GH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422219 8i7o:GH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422220 8i7o:GI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422221 8i7o:HD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422222 8i7o:HE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422223 8i7o:HF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422224 8i7o:HF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422225 8i7o:HG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422226 8i7o:HH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422227 8i7o:HH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422228 8i7o:HI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422229 8i7o:IE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422230 8i7o:IF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422231 8i7o:IF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422232 8i7o:IG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422233 8i7o:IH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422234 8i7o:IH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422235 8i7o:II (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422236 8i7o:JD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422237 8i7o:JD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422238 8i7o:JE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422239 8i7o:JF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422240 8i7o:JF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422241 8i7o:JG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422242 8i7o:JH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422243 8i7o:KD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422244 8i7o:KD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422245 8i7o:KE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422246 8i7o:KF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422247 8i7o:KF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422248 8i7o:KG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422249 8i7o:KH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422250 8i7o:KI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422251 8i7o:LD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422252 8i7o:LD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422253 8i7o:LE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422254 8i7o:LF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422255 8i7o:LF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422256 8i7o:LG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422257 8i7o:LH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422258 8i7o:LH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422259 8i7o:LI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422260 8i7o:ME (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422261 8i7o:MF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422262 8i7o:MF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422263 8i7o:MG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422264 8i7o:MH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422265 8i7o:MH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422266 8i7o:MI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422267 8i7o:ND (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422268 8i7o:ND (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422269 8i7o:NE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422270 8i7o:NF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422271 8i7o:NF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422272 8i7o:NG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422273 8i7o:NH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422274 8i7o:NI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422275 8i7o:OD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422276 8i7o:OD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422277 8i7o:OE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422278 8i7o:OF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422279 8i7o:OF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422280 8i7o:OG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422281 8i7o:OH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422282 8i7o:OH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422283 8i7o:OI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422284 8i7o:PE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422285 8i7o:PF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422286 8i7o:PF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422287 8i7o:PG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422288 8i7o:PH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422289 8i7o:PH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422290 8i7o:PI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422291 8i7o:QE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422292 8i7o:QF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422293 8i7o:QF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422294 8i7o:QG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422295 8i7o:QH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422296 8i7o:QH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422297 8i7o:QI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422298 8i7o:RE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422299 8i7o:RF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422300 8i7o:RF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422301 8i7o:RG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422302 8i7o:RH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422303 8i7o:RH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422304 8i7o:RI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422305 8i7o:RJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422306 8i7o:SE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422307 8i7o:SF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422308 8i7o:SF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422309 8i7o:SG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422310 8i7o:SH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422311 8i7o:SH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422312 8i7o:SI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422313 8i7o:SJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422314 8i7o:TF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422315 8i7o:TF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422316 8i7o:TG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422317 8i7o:TH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422318 8i7o:TH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422319 8i7o:TI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422320 8i7o:TJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422321 8i7o:UD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422322 8i7o:UD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422323 8i7o:UE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422324 8i7o:UF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422325 8i7o:UF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422326 8i7o:UG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422327 8i7o:UH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422328 8i7o:VD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422329 8i7o:VD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422330 8i7o:VE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422331 8i7o:VF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422332 8i7o:VF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422333 8i7o:VG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422334 8i7o:VH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422335 8i7o:WE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422336 8i7o:WF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422337 8i7o:WF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422338 8i7o:WG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422339 8i7o:WH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422340 8i7o:WH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422341 8i7o:WI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422342 8i7r:AB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422343 8i7r:AB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422344 8i7r:AC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422345 8i7r:AD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422346 8i7r:AD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422347 8i7r:AE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422348 8i7r:AF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422349 8i7r:AF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422350 8i7r:AG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422351 8i7r:AH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422352 8i7r:AH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422353 8i7r:AI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422354 8i7r:AJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422355 8i7r:AJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422356 8i7r:AK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422357 8i7r:AL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422358 8i7r:AL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422359 8i7r:AM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422360 8i7r:BB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422361 8i7r:BB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422362 8i7r:BC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422363 8i7r:BD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422364 8i7r:BD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422365 8i7r:BE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422366 8i7r:BF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422367 8i7r:BF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422368 8i7r:BG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422369 8i7r:BH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422370 8i7r:BH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422371 8i7r:BI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422372 8i7r:BJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422373 8i7r:BJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422374 8i7r:BK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422375 8i7r:BL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422376 8i7r:BL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422377 8i7r:BM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422378 8i7r:CB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422379 8i7r:CB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422380 8i7r:CC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422381 8i7r:CD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422382 8i7r:CD (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422383 8i7r:CE (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422384 8i7r:CF (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422385 8i7r:CF (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422386 8i7r:CG (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422387 8i7r:CH (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422388 8i7r:CH (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422389 8i7r:CI (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422390 8i7r:CJ (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422391 8i7r:CJ (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422392 8i7r:CK (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422393 8i7r:CL (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422394 8i7r:CL (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422395 8i7r:CM (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422396 8i7r:DA (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422397 8i7r:DB (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422398 8i7r:DB (6.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422399 8i7r:DC (6.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422400 8i7r:DD (6.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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