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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    422001 8i49:E (2.41) BS01 ATP ? N/A Q00IB3 N/A
    422002 8i49:F (2.41) BS01 ATP ? N/A Q00IB3 N/A
    422003 8i4a:A (3.4) BS01 H9F 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 N/A
    422004 8i4c:A (3.08) BS01 PUC 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 N/A
    422005 8i4d:A (1.06) BS01 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    422006 8i4d:A (1.06) BS02 MAN 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    422007 8i4d:A (1.06) BS03 RAM 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    422008 8i4d:A (1.06) BS04 ACT 4.2.2.- GO:0046872 ... A0A8J0PCK3 38382672
    422009 8i4i:A (2.2) BS01 TRP 6.1.1.2 GO:0000166 ... P00954 37070195
    422010 8i4i:B (2.2) BS01 TYM 6.1.1.2 GO:0000166 ... P00954 37070195
    422011 8i4p:A (1.9) BS01 FAD 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    422012 8i4q:A (1.9) BS01 NAP 1.1.1.44 GO:0000166 ... Q8NQI2 37417004
    422013 8i4q:B (1.9) BS01 NAP 1.1.1.44 GO:0000166 ... Q8NQI2 37417004
    422014 8i4r:A (2.51) BS01 FAD 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    422015 8i4r:A (2.51) BS02 ACO 6.2.1.5 GO:0003995 ... A0A4D5XMK4 N/A
    422016 8i4s:A (2.2) BS01 OU3 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37257212
    422017 8i4y:A (3.84) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    422018 8i4y:B (3.84) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    422019 8i4z:A (3.97) BS01 ONF 2.3.1.41 GO:0004312 ... A0A2N9BJK0 36899013
    422020 8i51:A (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422021 8i51:A (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422022 8i51:B (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422023 8i51:B (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422024 8i51:C (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422025 8i51:C (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422026 8i51:D (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422027 8i51:D (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422028 8i51:E (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422029 8i51:E (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422030 8i51:F (2.76) BS01 AMP ? N/A Q00IB3 N/A
    422031 8i51:F (2.76) BS02 OP3 ? N/A Q00IB3 N/A
    422032 8i52:D (1.58) BS03 OR6 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    422033 8i57:A (2.81) BS01 UP3 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 N/A
    422034 8i57:B (2.81) BS01 UP3 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 N/A
    422035 8i58:A (3.09) BS01 UPI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 N/A
    422036 8i58:B (3.09) BS01 UPI 4.99.1.11
    4.99.1.3
    GO:0009236 ... Q58380 N/A
    422037 8i5b:A (2.7) BS01 P5S ? GO:0001518 ... Q15858 37270609
    422038 8i5b:A (2.7) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    422039 8i5b:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    422040 8i5b:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    422041 8i5b:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    422042 8i5b:A (2.7) BS06 Y01 ? GO:0001518 ... Q15858 37270609
    422043 8i5b:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37270609
    422044 8i5b:A (2.7) BS08 LPE ? GO:0001518 ... Q15858 37270609
    422045 8i5b:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37270609
    422046 8i5b:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37270609
    422047 8i5b:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37270609
    422048 8i5b:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37270609
    422049 8i5b:A (2.7) BS13 OJ0 ? GO:0001518 ... Q15858 37270609
    422050 8i5g:A (2.7) BS01 Y01 ? GO:0001518 ... Q15858 37270609
    422051 8i5g:A (2.7) BS02 9Z9 ? GO:0001518 ... Q15858 37270609
    422052 8i5g:A (2.7) BS03 T70 ? GO:0001518 ... Q15858 37270609
    422053 8i5g:A (2.7) BS05 LPE ? GO:0001518 ... Q15858 37270609
    422054 8i5g:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37270609
    422055 8i5g:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37270609
    422056 8i5g:A (2.7) BS08 LPE ? GO:0001518 ... Q15858 37270609
    422057 8i5g:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37270609
    422058 8i5g:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37270609
    422059 8i5g:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37270609
    422060 8i5g:B (2.7) BS01 LPE ? GO:0001518 ... Q07699 37270609
    422061 8i5m:A (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422062 8i5m:B (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422063 8i5m:C (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422064 8i5m:D (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422065 8i5n:A (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422066 8i5n:B (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422067 8i5n:C (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422068 8i5n:D (2.85) BS01 PIO ? GO:0005242 ... P49655 38355723
    422069 8i5p:A (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422070 8i5p:A (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422071 8i5p:B (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422072 8i5p:B (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422073 8i5q:A (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422074 8i5q:A (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422075 8i5q:B (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422076 8i5q:B (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422077 8i5s:A (1.45) BS01 G2F 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422078 8i5s:A (1.45) BS03 NFG 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422079 8i5s:A (1.45) BS04 NFG 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422080 8i5t:A (1.5) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422081 8i5t:A (1.5) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422082 8i5u:A (1.4) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422083 8i5u:A (1.4) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    422084 8i5x:A (2.9) BS01 P5S ? GO:0001518 ... Q15858 37270609
    422085 8i5x:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    422086 8i5x:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    422087 8i5x:A (2.9) BS04 Y01 ? GO:0001518 ... Q15858 37270609
    422088 8i5x:A (2.9) BS05 9Z9 ? GO:0001518 ... Q15858 37270609
    422089 8i5x:A (2.9) BS06 T7F ? GO:0001518 ... Q15858 37270609
    422090 8i5x:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37270609
    422091 8i5x:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37270609
    422092 8i5x:A (2.9) BS09 LPE ? GO:0001518 ... Q15858 37270609
    422093 8i5x:A (2.9) BS10 LPE ? GO:0001518 ... Q15858 37270609
    422094 8i5x:A (2.9) BS11 LPE ? GO:0001518 ... Q15858 37270609
    422095 8i5x:A (2.9) BS12 LPE ? GO:0001518 ... Q15858 37270609
    422096 8i5x:A (2.9) BS13 LPE ? GO:0001518 ... Q15858 37270609
    422097 8i5x:A (2.9) BS14 LPE ? GO:0001518 ... Q15858 37270609
    422098 8i5x:A (2.9) BS15 LPE ? GO:0001518 ... Q15858 37270609
    422099 8i5x:A (2.9) BS16 Y01 ? GO:0001518 ... Q15858 37270609
    422100 8i5x:A (2.9) BS17 LPE ? GO:0001518 ... Q15858 37270609
    422101 8i5x:B (2.9) BS01 LPE ? GO:0001518 ... Q07699 37270609
    422102 8i5y:A (2.6) BS01 P5S ? GO:0001518 ... Q15858 37270609
    422103 8i5y:A (2.6) BS02 Y01 ? GO:0001518 ... Q15858 37270609
    422104 8i5y:A (2.6) BS03 Y01 ? GO:0001518 ... Q15858 37270609
    422105 8i5y:A (2.6) BS04 9Z9 ? GO:0001518 ... Q15858 37270609
    422106 8i5y:A (2.6) BS05 Y01 ? GO:0001518 ... Q15858 37270609
    422107 8i5y:A (2.6) BS06 TB4 ? GO:0001518 ... Q15858 37270609
    422108 8i5y:A (2.6) BS08 LPE ? GO:0001518 ... Q15858 37270609
    422109 8i5y:A (2.6) BS09 1PW ? GO:0001518 ... Q15858 37270609
    422110 8i5y:A (2.6) BS10 LPE ? GO:0001518 ... Q15858 37270609
    422111 8i5y:A (2.6) BS11 LPE ? GO:0001518 ... Q15858 37270609
    422112 8i5y:A (2.6) BS12 LPE ? GO:0001518 ... Q15858 37270609
    422113 8i5y:A (2.6) BS13 LPE ? GO:0001518 ... Q15858 37270609
    422114 8i5y:A (2.6) BS14 LPE ? GO:0001518 ... Q15858 37270609
    422115 8i5y:A (2.6) BS15 LPE ? GO:0001518 ... Q15858 37270609
    422116 8i5y:A (2.6) BS16 LPE ? GO:0001518 ... Q15858 37270609
    422117 8i5y:A (2.6) BS17 LPE ? GO:0001518 ... Q15858 37270609
    422118 8i5y:A (2.6) BS18 Y01 ? GO:0001518 ... Q15858 37270609
    422119 8i5y:A (2.6) BS19 LPE ? GO:0001518 ... Q15858 37270609
    422120 8i5y:B (2.6) BS01 LPE ? GO:0001518 ... Q07699 37270609
    422121 8i5y:B (2.6) BS02 LPE ? GO:0001518 ... Q07699 37270609
    422122 8i61:A (1.24) BS01 BR8 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422123 8i62:A (1.26) BS01 BR8 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422124 8i63:A (1.95) BS01 BR8 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422125 8i64:A (2.26) BS01 BR8 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422126 8i65:A (1.72) BS01 5CU 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422127 8i66:A (2.6) BS01 5CU 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422128 8i67:A (1.72) BS01 OD3 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422129 8i68:A (1.88) BS01 URC 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422130 8i69:A (2.0) BS01 FOT 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422131 8i6b:A (1.6) BS01 ODF 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422132 8i6c:A (2.28) BS01 OG6 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422133 8i6d:A (2.4) BS01 ODF 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422134 8i6d:A (2.4) BS02 ODF 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422135 8i6d:B (2.4) BS01 ODF 3.2.2.27 GO:0004844 ... P9WFQ9 37399710
    422136 8i6i:A (1.49) BS01 FAD N/A N/A A0A2A5PFR1 N/A
    422137 8i6i:C (1.49) BS01 FAD N/A N/A A0A2A5PFR1 N/A
    422138 8i6j:C (3.82) BS01 ADP ? GO:0002199 ... P49368 38307855
    422139 8i6m:A (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422140 8i6m:B (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422141 8i6m:C (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422142 8i6m:D (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422143 8i6m:E (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422144 8i6m:F (2.59) BS01 AMP ? N/A Q00IB3 N/A
    422145 8i6r:B (4.0) BS01 ATP ? GO:0005524 ... Q9I6C0 37186861
    422146 8i6r:B (4.0) BS03 ATP ? GO:0005524 ... Q9I6C0 37186861
    422147 8i6r:D (4.0) BS01 ATP ? GO:0005524 ... Q9I6C0 37186861
    422148 8i6r:D (4.0) BS02 ATP ? GO:0005524 ... Q9I6C0 37186861
    422149 8i6s:B (4.4) BS01 ATP ? GO:0005524 ... Q9I6C0 37186861
    422150 8i6s:B (4.4) BS03 ATP ? GO:0005524 ... Q9I6C0 37186861
    422151 8i6s:D (4.4) BS01 ATP ? GO:0005524 ... Q9I6C0 37186861
    422152 8i6s:D (4.4) BS02 ATP ? GO:0005524 ... Q9I6C0 37186861
    422153 8i6v:E (3.06) BS01 3PO 2.7.4.1 GO:0000329 ... P47075 37066886
    422154 8i70:A (1.9) BS01 NAP 1.2.1.75 N/A A9WIU3 37146856
    422155 8i71:A (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422156 8i71:A (1.6) BS02 OTI ? GO:0005198 ... P03147 36896968
    422157 8i71:B (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422158 8i71:C (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422159 8i71:C (1.6) BS02 OTI ? GO:0005198 ... P03147 36896968
    422160 8i71:D (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422161 8i71:E (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422162 8i71:E (1.6) BS02 OTI ? GO:0005198 ... P03147 36896968
    422163 8i71:F (1.6) BS01 OTI ? GO:0005198 ... P03147 36896968
    422164 8i7h:A (3.02) BS01 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422165 8i7h:A (3.02) BS02 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422166 8i7h:B (3.02) BS01 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422167 8i7h:B (3.02) BS02 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422168 8i7h:C (3.02) BS01 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422169 8i7h:C (3.02) BS02 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422170 8i7h:D (3.02) BS01 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422171 8i7h:D (3.02) BS02 API 1.4.1.16 GO:0000166 ... A0A379F6K8 N/A
    422172 8i7l:A (2.8) BS01 OIH 1.13.11.52 GO:0002376 ... P14902 35725271
    422173 8i7l:B (2.8) BS01 OIH 1.13.11.52 GO:0002376 ... P14902 35725271
    422174 8i7o:AE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422175 8i7o:AF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422176 8i7o:AF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422177 8i7o:AG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422178 8i7o:AH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422179 8i7o:AI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422180 8i7o:BE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422181 8i7o:BF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422182 8i7o:BF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422183 8i7o:BG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422184 8i7o:BH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422185 8i7o:BH (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422186 8i7o:BI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422187 8i7o:CF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422188 8i7o:CF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422189 8i7o:CG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422190 8i7o:CH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422191 8i7o:CI (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422192 8i7o:CJ (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422193 8i7o:DD (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422194 8i7o:DD (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422195 8i7o:DE (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422196 8i7o:DF (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422197 8i7o:DF (4.5) BS02 GTP ? GO:0003725 ... P68372 37989994
    422198 8i7o:DG (4.5) BS01 GTP 3.6.5.- GO:0003674 ... P05214 37989994
    422199 8i7o:DH (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994
    422200 8i7o:ED (4.5) BS01 GTP ? GO:0003725 ... P68372 37989994

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218