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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    420601 8hpo:F (2.6) BS01 TPO 3.5.1.98 GO:0000082 ... P32561 37081318
    420602 8hpr:C (3.75) BS01 ATP ? GO:0005524 ... A0R2C0 37619560
    420603 8hpr:C (3.75) BS03 ATP ? GO:0005524 ... A0R2C0 37619560
    420604 8hpr:D (3.75) BS01 ATP ? GO:0005524 ... A0R2C0 37619560
    420605 8hpr:D (3.75) BS02 ATP ? GO:0005524 ... A0R2C0 37619560
    420606 8hpr:E (3.75) BS01 GLC ? N/A A0R2C3 37619560
    420607 8hpr:E (3.75) BS02 GLC ? N/A A0R2C3 37619560
    420608 8hps:A (3.51) BS01 GLC ? GO:0005886 ... A0R2C2 37619560
    420609 8hps:C (3.51) BS01 ATP ? GO:0005524 ... A0R2C0 37619560
    420610 8hps:C (3.51) BS03 ATP ? GO:0005524 ... A0R2C0 37619560
    420611 8hps:D (3.51) BS01 ATP ? GO:0005524 ... A0R2C0 37619560
    420612 8hps:D (3.51) BS02 ATP ? GO:0005524 ... A0R2C0 37619560
    420613 8hq3:A (2.1) BS02 GTP 3.6.5.- GO:0000054 ... P62826 37595020
    420614 8hq3:C (2.1) BS01 MI8 ? GO:0000055 ... P30822 37595020
    420615 8hq4:A (2.12) BS02 GTP 3.6.5.- GO:0000054 ... P62826 N/A
    420616 8hq4:C (2.12) BS01 M9R ? GO:0000055 ... P30822 N/A
    420617 8hq5:A (2.25) BS02 GTP 3.6.5.- GO:0000054 ... P62826 N/A
    420618 8hq5:C (2.25) BS01 MBI ? GO:0000055 ... P30822 N/A
    420619 8hq6:A (2.03) BS02 GTP 3.6.5.- GO:0000054 ... P62826 37595020
    420620 8hq6:C (2.03) BS01 GLU ? GO:0000055 ... P30822 37595020
    420621 8hq6:C (2.03) BS02 MFF ? GO:0000055 ... P30822 37595020
    420622 8hq8:A (2.6) BS01 0IE N/A GO:0009765 ... N/A 37633266
    420623 8hq8:A (2.6) BS02 0IE N/A GO:0009765 ... N/A 37633266
    420624 8hq8:A (2.6) BS03 CHL N/A GO:0009765 ... N/A 37633266
    420625 8hq8:A (2.6) BS04 CHL N/A GO:0009765 ... N/A 37633266
    420626 8hq8:A (2.6) BS05 CLA N/A GO:0009765 ... N/A 37633266
    420627 8hq8:A (2.6) BS06 CLA N/A GO:0009765 ... N/A 37633266
    420628 8hq8:A (2.6) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420629 8hq8:A (2.6) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420630 8hq8:A (2.6) BS09 CHL N/A GO:0009765 ... N/A 37633266
    420631 8hq8:A (2.6) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420632 8hq8:A (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420633 8hq8:A (2.6) BS12 CLA N/A GO:0009765 ... N/A 37633266
    420634 8hq8:A (2.6) BS13 CLA N/A GO:0009765 ... N/A 37633266
    420635 8hq8:A (2.6) BS14 CLA N/A GO:0009765 ... N/A 37633266
    420636 8hq8:A (2.6) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420637 8hq8:A (2.6) BS16 CHL N/A GO:0009765 ... N/A 37633266
    420638 8hq8:A (2.6) BS17 0UR N/A GO:0009765 ... N/A 37633266
    420639 8hq8:A (2.6) BS18 0UR N/A GO:0009765 ... N/A 37633266
    420640 8hq8:A (2.6) BS19 CHL N/A GO:0009765 ... N/A 37633266
    420641 8hq8:A (2.6) BS20 CHL N/A GO:0009765 ... N/A 37633266
    420642 8hq8:A (2.6) BS21 CHL N/A GO:0009765 ... N/A 37633266
    420643 8hq8:B (2.6) BS01 CHL N/A GO:0009765 ... N/A 37633266
    420644 8hq8:B (2.6) BS02 0IE N/A GO:0009765 ... N/A 37633266
    420645 8hq8:B (2.6) BS03 0UR N/A GO:0009765 ... N/A 37633266
    420646 8hq8:B (2.6) BS04 CHL N/A GO:0009765 ... N/A 37633266
    420647 8hq8:B (2.6) BS05 CHL N/A GO:0009765 ... N/A 37633266
    420648 8hq8:B (2.6) BS06 CLA N/A GO:0009765 ... N/A 37633266
    420649 8hq8:B (2.6) BS07 CLA N/A GO:0009765 ... N/A 37633266
    420650 8hq8:B (2.6) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420651 8hq8:B (2.6) BS09 CHL N/A GO:0009765 ... N/A 37633266
    420652 8hq8:B (2.6) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420653 8hq8:B (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420654 8hq8:B (2.6) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420655 8hq8:B (2.6) BS13 CLA N/A GO:0009765 ... N/A 37633266
    420656 8hq8:B (2.6) BS14 CLA N/A GO:0009765 ... N/A 37633266
    420657 8hq8:B (2.6) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420658 8hq8:B (2.6) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420659 8hq8:B (2.6) BS17 CHL N/A GO:0009765 ... N/A 37633266
    420660 8hq8:B (2.6) BS18 0UR N/A GO:0009765 ... N/A 37633266
    420661 8hq8:B (2.6) BS19 0IE N/A GO:0009765 ... N/A 37633266
    420662 8hq8:C (2.6) BS01 0IE N/A GO:0009765 ... N/A 37633266
    420663 8hq8:C (2.6) BS02 CHL N/A GO:0009765 ... N/A 37633266
    420664 8hq8:C (2.6) BS03 CHL N/A GO:0009765 ... N/A 37633266
    420665 8hq8:C (2.6) BS04 CHL N/A GO:0009765 ... N/A 37633266
    420666 8hq8:C (2.6) BS05 0IE N/A GO:0009765 ... N/A 37633266
    420667 8hq8:C (2.6) BS06 0IE N/A GO:0009765 ... N/A 37633266
    420668 8hq8:C (2.6) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420669 8hq8:C (2.6) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420670 8hq8:C (2.6) BS09 CLA N/A GO:0009765 ... N/A 37633266
    420671 8hq8:C (2.6) BS10 CLA N/A GO:0009765 ... N/A 37633266
    420672 8hq8:C (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420673 8hq8:C (2.6) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420674 8hq8:C (2.6) BS13 CHL N/A GO:0009765 ... N/A 37633266
    420675 8hq8:C (2.6) BS14 CHL N/A GO:0009765 ... N/A 37633266
    420676 8hq8:C (2.6) BS15 CHL N/A GO:0009765 ... N/A 37633266
    420677 8hq8:C (2.6) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420678 8hq8:C (2.6) BS17 CLA N/A GO:0009765 ... N/A 37633266
    420679 8hq8:C (2.6) BS18 CLA N/A GO:0009765 ... N/A 37633266
    420680 8hq8:C (2.6) BS19 CLA N/A GO:0009765 ... N/A 37633266
    420681 8hq8:C (2.6) BS20 CHL N/A GO:0009765 ... N/A 37633266
    420682 8hq8:C (2.6) BS21 0UR N/A GO:0009765 ... N/A 37633266
    420683 8hq8:D (2.6) BS01 0IE N/A GO:0009765 ... N/A 37633266
    420684 8hq8:D (2.6) BS02 0IE N/A GO:0009765 ... N/A 37633266
    420685 8hq8:D (2.6) BS03 CHL N/A GO:0009765 ... N/A 37633266
    420686 8hq8:D (2.6) BS04 CHL N/A GO:0009765 ... N/A 37633266
    420687 8hq8:D (2.6) BS05 CLA N/A GO:0009765 ... N/A 37633266
    420688 8hq8:D (2.6) BS06 CLA N/A GO:0009765 ... N/A 37633266
    420689 8hq8:D (2.6) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420690 8hq8:D (2.6) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420691 8hq8:D (2.6) BS09 CHL N/A GO:0009765 ... N/A 37633266
    420692 8hq8:D (2.6) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420693 8hq8:D (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420694 8hq8:D (2.6) BS12 CLA N/A GO:0009765 ... N/A 37633266
    420695 8hq8:D (2.6) BS13 CLA N/A GO:0009765 ... N/A 37633266
    420696 8hq8:D (2.6) BS14 CLA N/A GO:0009765 ... N/A 37633266
    420697 8hq8:D (2.6) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420698 8hq8:D (2.6) BS16 CHL N/A GO:0009765 ... N/A 37633266
    420699 8hq8:D (2.6) BS17 0UR N/A GO:0009765 ... N/A 37633266
    420700 8hq8:D (2.6) BS18 CHL N/A GO:0009765 ... N/A 37633266
    420701 8hq8:D (2.6) BS19 CHL N/A GO:0009765 ... N/A 37633266
    420702 8hq8:D (2.6) BS20 0IE N/A GO:0009765 ... N/A 37633266
    420703 8hq8:D (2.6) BS21 CHL N/A GO:0009765 ... N/A 37633266
    420704 8hq8:E (2.6) BS01 0IE N/A GO:0009765 ... N/A 37633266
    420705 8hq8:E (2.6) BS02 CHL N/A GO:0009765 ... N/A 37633266
    420706 8hq8:E (2.6) BS03 0IE N/A GO:0009765 ... N/A 37633266
    420707 8hq8:E (2.6) BS04 0IE N/A GO:0009765 ... N/A 37633266
    420708 8hq8:E (2.6) BS05 CHL N/A GO:0009765 ... N/A 37633266
    420709 8hq8:E (2.6) BS06 CHL N/A GO:0009765 ... N/A 37633266
    420710 8hq8:E (2.6) BS07 CLA N/A GO:0009765 ... N/A 37633266
    420711 8hq8:E (2.6) BS08 CLA N/A GO:0009765 ... N/A 37633266
    420712 8hq8:E (2.6) BS09 CHL N/A GO:0009765 ... N/A 37633266
    420713 8hq8:E (2.6) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420714 8hq8:E (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420715 8hq8:E (2.6) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420716 8hq8:E (2.6) BS13 CHL N/A GO:0009765 ... N/A 37633266
    420717 8hq8:E (2.6) BS14 CLA N/A GO:0009765 ... N/A 37633266
    420718 8hq8:E (2.6) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420719 8hq8:E (2.6) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420720 8hq8:E (2.6) BS17 CLA N/A GO:0009765 ... N/A 37633266
    420721 8hq8:E (2.6) BS18 CHL N/A GO:0009765 ... N/A 37633266
    420722 8hq8:E (2.6) BS19 0UR N/A GO:0009765 ... N/A 37633266
    420723 8hq8:E (2.6) BS20 CHL N/A GO:0009765 ... N/A 37633266
    420724 8hq8:E (2.6) BS21 CHL N/A GO:0009765 ... N/A 37633266
    420725 8hq8:F (2.6) BS01 CHL N/A GO:0009765 ... N/A 37633266
    420726 8hq8:F (2.6) BS02 CHL N/A GO:0009765 ... N/A 37633266
    420727 8hq8:F (2.6) BS03 0IE N/A GO:0009765 ... N/A 37633266
    420728 8hq8:F (2.6) BS04 0IE N/A GO:0009765 ... N/A 37633266
    420729 8hq8:F (2.6) BS05 0IE N/A GO:0009765 ... N/A 37633266
    420730 8hq8:F (2.6) BS06 CHL N/A GO:0009765 ... N/A 37633266
    420731 8hq8:F (2.6) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420732 8hq8:F (2.6) BS08 CLA N/A GO:0009765 ... N/A 37633266
    420733 8hq8:F (2.6) BS09 CLA N/A GO:0009765 ... N/A 37633266
    420734 8hq8:F (2.6) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420735 8hq8:F (2.6) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420736 8hq8:F (2.6) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420737 8hq8:F (2.6) BS13 CHL N/A GO:0009765 ... N/A 37633266
    420738 8hq8:F (2.6) BS14 CHL N/A GO:0009765 ... N/A 37633266
    420739 8hq8:F (2.6) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420740 8hq8:F (2.6) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420741 8hq8:F (2.6) BS17 CLA N/A GO:0009765 ... N/A 37633266
    420742 8hq8:F (2.6) BS18 CLA N/A GO:0009765 ... N/A 37633266
    420743 8hq8:F (2.6) BS19 CHL N/A GO:0009765 ... N/A 37633266
    420744 8hq8:F (2.6) BS20 0UR N/A GO:0009765 ... N/A 37633266
    420745 8hqf:A (1.51) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420746 8hqf:B (1.51) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420747 8hqg:A (1.88) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420748 8hqg:B (1.88) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420749 8hqh:A (1.58) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420750 8hqh:B (1.58) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420751 8hqi:A (1.55) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420752 8hqi:B (1.55) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420753 8hqj:A (1.74) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420754 8hqj:B (1.74) BS01 HUR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    420755 8hqm:R (2.95) BS01 140 ? GO:0000082 ... P0ABE7
    Q9UNW8    		 37770763
    420756 8hqn:R (3.0) BS01 9HO ? GO:0000082 ... P0ABE7
    Q9UNW8    		 37770763
    420757 8hqq:A (1.86) BS01 BGC ? GO:0015768 ... Q4FMK2 39261732
    420758 8hqr:A (1.32) BS01 ARG ? N/A Q4FLC2 39261732
    420759 8hqr:B (1.32) BS01 ARG ? N/A Q4FLC2 39261732
    420760 8hr6:A (3.52) BS01 NAD 1.4.1.9 GO:0000166 ... A0A9X5N1L9 36946691
    420761 8hr6:B (3.52) BS01 NAD 1.4.1.9 GO:0000166 ... A0A9X5N1L9 36946691
    420762 8hr8:A (3.3) BS01 ATP N/A N/A N/A 36764292
    420763 8hr8:C (3.3) BS01 ATP N/A N/A N/A 36764292
    420764 8hr8:F (3.3) BS01 ATP N/A N/A N/A 36764292
    420765 8hr8:G (3.3) BS01 ATP N/A N/A N/A 36764292
    420766 8hr8:H (3.3) BS01 ATP N/A N/A N/A 36764292
    420767 8hr9:A (3.03) BS01 ATP N/A N/A N/A 36764292
    420768 8hr9:C (3.03) BS01 ATP N/A N/A N/A 36764292
    420769 8hr9:F (3.03) BS01 ATP N/A N/A N/A 36764292
    420770 8hr9:G (3.03) BS01 ATP N/A N/A N/A 36764292
    420771 8hr9:H (3.03) BS01 ATP N/A N/A N/A 36764292
    420772 8hr9:I (3.03) BS01 ATP N/A N/A N/A 36764292
    420773 8hr9:J (3.03) BS01 ATP N/A N/A N/A 36764292
    420774 8hr9:M (3.03) BS01 ATP N/A N/A N/A 36764292
    420775 8hr9:N (3.03) BS01 ATP N/A N/A N/A 36764292
    420776 8hr9:O (3.03) BS01 ATP N/A N/A N/A 36764292
    420777 8hra:B (3.76) BS02 ATP N/A N/A N/A 36764292
    420778 8hra:E (3.76) BS02 ATP N/A N/A N/A 36764292
    420779 8hra:G (3.76) BS01 ATP N/A N/A N/A 36764292
    420780 8hra:H (3.76) BS02 ATP N/A N/A N/A 36764292
    420781 8hrb:B (3.78) BS02 ATP N/A N/A N/A 36764292
    420782 8hrb:E (3.78) BS02 ATP N/A N/A N/A 36764292
    420783 8hrb:G (3.78) BS01 ATP N/A N/A N/A 36764292
    420784 8hrb:H (3.78) BS02 ATP N/A N/A N/A 36764292
    420785 8hrb:K (3.78) BS02 ATP N/A N/A N/A 36764292
    420786 8hrb:P (3.78) BS02 ATP N/A N/A N/A 36764292
    420787 8hrb:Q (3.78) BS01 ATP N/A N/A N/A 36764292
    420788 8hrb:R (3.78) BS02 ATP N/A N/A N/A 36764292
    420789 8hrh:A (2.07) BS01 ASP N/A N/A N/A 37547453
    420790 8hrh:A (2.07) BS02 ARG N/A N/A N/A 37547453
    420791 8hrh:B (2.07) BS01 ARG N/A N/A N/A 37547453
    420792 8hrh:B (2.07) BS02 PRO N/A N/A N/A 37547453
    420793 8hro:A (2.59) BS01 NAD 1.2.1.12 GO:0000166 ... Q01651 37935620
    420794 8hro:B (2.59) BS01 NAD 1.2.1.12 GO:0000166 ... Q01651 37935620
    420795 8hrp:A (1.99) BS01 NAD 1.2.1.12 GO:0000166 ... Q01651 37935620
    420796 8hrp:A (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    420797 8hrp:B (1.99) BS01 NAD 1.2.1.12 GO:0000166 ... Q01651 37935620
    420798 8hrp:B (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    420799 8hrp:C (1.99) BS01 NAD 1.2.1.12 GO:0000166 ... Q01651 37935620
    420800 8hrp:C (1.99) BS02 G3H 1.2.1.12 GO:0000166 ... Q01651 37935620
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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