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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    420201 8hjv:V (3.1) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    420202 8hjv:V (3.1) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    420203 8hjv:W (3.1) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    420204 8hjv:W (3.1) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    420205 8hjv:W (3.1) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    420206 8hjv:Y (3.1) BS01 MQE N/A N/A N/A 37737710
    420207 8hk0:A (2.29) BS01 FAD ? GO:0000166 ... A0A1W5T3Z2 37043819
    420208 8hk0:B (2.29) BS01 FAD ? GO:0000166 ... A0A1W5T3Z2 37043819
    420209 8hk0:C (2.29) BS01 FAD ? GO:0000166 ... A0A1W5T2G8 37043819
    420210 8hk0:D (2.29) BS01 FAD ? GO:0000166 ... A0A1W5T2G8 37043819
    420211 8hk1:1 (2.7) BS01 9B0 ? GO:0000245 ... O75533 36797247
    420212 8hk2:A (2.9) BS01 CLR ? GO:0002430 ... Q16581 37169960
    420213 8hk2:A (2.9) BS02 CLR ? GO:0002430 ... Q16581 37169960
    420214 8hk7:A (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    420215 8hk7:B (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    420216 8hk7:C (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    420217 8hk7:D (3.0) BS01 AQV ? GO:0005509 ... Q13563 38483987
    420218 8hka:A (1.02) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    420219 8hkb:A (1.4) BS01 UB7 ? N/A A0A0K8P8D2 37295700
    420220 8hkd:A (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    420221 8hkd:B (2.35) BS01 HEM 1.11.2.4 GO:0004497 ... O31440 N/A
    420222 8hki:G (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    420223 8hki:Q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    420224 8hki:Z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    420225 8hki:g (3.1) BS01 ADP ? GO:0002199 ... P49368 N/A
    420226 8hki:q (3.1) BS01 ADP ? GO:0002199 ... P50990 N/A
    420227 8hki:z (3.1) BS01 ADP ? GO:0003723 ... P40227 N/A
    420228 8hkj:A (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420229 8hkj:B (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420230 8hkj:C (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420231 8hkj:D (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420232 8hkj:E (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420233 8hkj:F (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420234 8hkj:G (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420235 8hkj:H (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420236 8hkj:I (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420237 8hkj:J (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420238 8hkj:K (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420239 8hkj:L (2.8) BS01 HEM 1.14.14.1
    1.6.2.4    		 GO:0004497 ... Q81BF4 37167731
    420240 8hkm:A (2.95) BS02 6OU ? GO:0006813 ... Q5JUK3 37494189
    420241 8hkm:B (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    420242 8hkm:C (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    420243 8hkm:D (2.95) BS01 6OU ? GO:0006813 ... Q5JUK3 37494189
    420244 8hkn:A (2.5) BS01 25I 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420245 8hkn:B (2.5) BS01 25I 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420246 8hko:A (2.1) BS01 RPB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420247 8hko:B (2.1) BS01 RPB 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420248 8hkp:A (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420249 8hkp:B (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420250 8hkp:C (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420251 8hkp:D (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420252 8hkp:E (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420253 8hkp:F (3.6) BS01 AV0 ? GO:0005243 ... Q9UKL4 36906653
    420254 8hkq:A (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    420255 8hkq:B (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    420256 8hkq:C (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    420257 8hkq:D (2.9) BS01 LQ9 ? GO:0006813 ... Q5JUK3 37494189
    420258 8hkr:A (2.4) BS01 SAH ? GO:0005886 ... P9WLL9 38129415
    420259 8hkr:B (2.4) BS01 SAH ? GO:0005886 ... P9WLL9 38129415
    420260 8hks:A (2.8) BS01 DS9 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420261 8hks:B (2.8) BS01 DS9 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420262 8hks:C (2.8) BS01 DS9 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420263 8hks:D (2.8) BS01 DS9 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420264 8hky:AS2P (4.45) BS02 UNK ? GO:0003735 ... P39478 37604686
    420265 8hky:AS2P (4.45) BS03 UNK ? GO:0003735 ... P39478 37604686
    420266 8hky:AS5P (4.45) BS02 UNK ? GO:0003723 ... O05641 37604686
    420267 8hky:AS5P (4.45) BS03 UNK ? GO:0003723 ... O05641 37604686
    420268 8hky:AS5P (4.45) BS04 UNK ? GO:0003723 ... O05641 37604686
    420269 8hkz:AS2P (4.78) BS02 UNK ? GO:0003735 ... P39478 37604686
    420270 8hkz:AS2P (4.78) BS03 UNK ? GO:0003735 ... P39478 37604686
    420271 8hkz:AS2P (4.78) BS04 UNK ? GO:0003735 ... P39478 37604686
    420272 8hkz:AS5P (4.78) BS02 UNK ? GO:0003723 ... O05641 37604686
    420273 8hkz:AS5P (4.78) BS03 UNK ? GO:0003723 ... O05641 37604686
    420274 8hkz:AS5P (4.78) BS04 UNK ? GO:0003723 ... O05641 37604686
    420275 8hl1:AEFG (3.93) BS04 GNP ? GO:0003746 ... P23112 37604686
    420276 8hl1:AS2P (3.93) BS02 UNK ? GO:0003735 ... P39478 37604686
    420277 8hl1:AS5P (3.93) BS02 UNK ? GO:0003723 ... O05641 37604686
    420278 8hl2:AEFG (4.1) BS04 GNP ? GO:0003746 ... P23112 37604686
    420279 8hl2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 37604686
    420280 8hl2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 37604686
    420281 8hl3:AEFG (4.8) BS03 GNP ? GO:0003746 ... P23112 37604686
    420282 8hl3:AS5P (4.8) BS02 UNK ? GO:0003723 ... O05641 37604686
    420283 8hl3:AS5P (4.8) BS03 UNK ? GO:0003723 ... O05641 37604686
    420284 8hl3:AS5P (4.8) BS04 UNK ? GO:0003723 ... O05641 37604686
    420285 8hl4:AEFG (4.62) BS03 GNP ? GO:0003746 ... P23112 37604686
    420286 8hl4:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 37604686
    420287 8hl4:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 37604686
    420288 8hl4:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 37604686
    420289 8hl4:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 37604686
    420290 8hl4:AS5P (4.62) BS04 UNK ? GO:0003723 ... O05641 37604686
    420291 8hl5:AS5P (5.72) BS02 UNK ? GO:0003723 ... O05641 37604686
    420292 8hl5:AS5P (5.72) BS03 UNK ? GO:0003723 ... O05641 37604686
    420293 8hl5:AS5P (5.72) BS04 UNK ? GO:0003723 ... O05641 37604686
    420294 8hl5:AS8P (5.72) BS02 UNK ? GO:0003735 ... O05636 37604686
    420295 8hl6:A (1.8) BS01 SAM 2.1.1.- GO:0005515 ... Q9H867 37456834
    420296 8hl7:A (2.8) BS01 SAH 2.1.1.- GO:0005515 ... Q9H867 37456834
    420297 8hl7:B (2.8) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 37456834
    420298 8hla:A (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420299 8hla:A (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420300 8hla:B (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420301 8hla:B (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420302 8hla:C (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420303 8hla:C (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420304 8hla:D (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420305 8hla:D (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420306 8hla:E (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420307 8hla:E (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420308 8hla:F (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420309 8hla:F (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420310 8hla:G (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420311 8hla:G (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420312 8hla:H (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420313 8hla:H (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420314 8hla:I (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420315 8hla:J (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420316 8hla:K (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420317 8hla:K (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420318 8hla:K (2.81) BS03 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420319 8hla:L (2.81) BS01 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420320 8hla:L (2.81) BS02 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420321 8hla:L (2.81) BS03 FL3 1.11.1.24 GO:0004601 ... Q5JF30 36888722
    420322 8hlc:A (2.8) BS01 EIC ? N/A P0DTC2 N/A
    420323 8hlc:B (2.8) BS01 EIC ? N/A P0DTC2 N/A
    420324 8hlc:C (2.8) BS01 EIC ? N/A P0DTC2 N/A
    420325 8hle:A (1.91) BS02 LNI ? GO:0047869 ... N8X9V6 38030907
    420326 8hle:B (1.91) BS02 LNI ? GO:0047869 ... N8X9V6 38030907
    420327 8hlf:A (1.62) BS02 LNI ? GO:0046872 ... Q4FNM4 38030907
    420328 8hlf:B (1.62) BS02 LNI ? GO:0046872 ... Q4FNM4 38030907
    420329 8hlj:A (2.24) BS01 09L 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420330 8hlj:B (2.24) BS01 09L 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420331 8hlk:A (2.7) BS01 LEU ? GO:0003824 ... O54504 38340732
    420332 8hlk:A (2.7) BS02 AMP ? GO:0003824 ... O54504 38340732
    420333 8hlq:A (2.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420334 8hlq:B (2.7) BS01 3JD 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9UGN5 N/A
    420335 8hlr:A (2.85) BS01 25I 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A
    420336 8hlr:B (2.85) BS01 25I 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 N/A
    420337 8hlt:A (2.8) BS01 XSE 2.7.12.1 GO:0004672 ... Q92630 36800260
    420338 8hlt:B (2.8) BS01 XSE 2.7.12.1 GO:0004672 ... Q92630 36800260
    420339 8hlv:A (2.55) BS01 0UR N/A GO:0009765 ... N/A 37633266
    420340 8hlv:A (2.55) BS02 0IE N/A GO:0009765 ... N/A 37633266
    420341 8hlv:A (2.55) BS03 0IE N/A GO:0009765 ... N/A 37633266
    420342 8hlv:A (2.55) BS04 CHL N/A GO:0009765 ... N/A 37633266
    420343 8hlv:A (2.55) BS05 CHL N/A GO:0009765 ... N/A 37633266
    420344 8hlv:A (2.55) BS06 CLA N/A GO:0009765 ... N/A 37633266
    420345 8hlv:A (2.55) BS07 CLA N/A GO:0009765 ... N/A 37633266
    420346 8hlv:A (2.55) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420347 8hlv:A (2.55) BS09 CHL N/A GO:0009765 ... N/A 37633266
    420348 8hlv:A (2.55) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420349 8hlv:A (2.55) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420350 8hlv:A (2.55) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420351 8hlv:A (2.55) BS13 CLA N/A GO:0009765 ... N/A 37633266
    420352 8hlv:A (2.55) BS14 CLA N/A GO:0009765 ... N/A 37633266
    420353 8hlv:A (2.55) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420354 8hlv:A (2.55) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420355 8hlv:A (2.55) BS17 CHL N/A GO:0009765 ... N/A 37633266
    420356 8hlv:A (2.55) BS18 0IE N/A GO:0009765 ... N/A 37633266
    420357 8hlv:A (2.55) BS19 CHL N/A GO:0009765 ... N/A 37633266
    420358 8hlv:A (2.55) BS20 CHL N/A GO:0009765 ... N/A 37633266
    420359 8hlv:A (2.55) BS21 CHL N/A GO:0009765 ... N/A 37633266
    420360 8hlv:B (2.55) BS01 CHL N/A GO:0009765 ... N/A 37633266
    420361 8hlv:B (2.55) BS02 CHL N/A GO:0009765 ... N/A 37633266
    420362 8hlv:B (2.55) BS03 0UR N/A GO:0009765 ... N/A 37633266
    420363 8hlv:B (2.55) BS04 0IE N/A GO:0009765 ... N/A 37633266
    420364 8hlv:B (2.55) BS05 0IE N/A GO:0009765 ... N/A 37633266
    420365 8hlv:B (2.55) BS06 CHL N/A GO:0009765 ... N/A 37633266
    420366 8hlv:B (2.55) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420367 8hlv:B (2.55) BS08 CLA N/A GO:0009765 ... N/A 37633266
    420368 8hlv:B (2.55) BS09 CLA N/A GO:0009765 ... N/A 37633266
    420369 8hlv:B (2.55) BS10 CHL N/A GO:0009765 ... N/A 37633266
    420370 8hlv:B (2.55) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420371 8hlv:B (2.55) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420372 8hlv:B (2.55) BS13 CHL N/A GO:0009765 ... N/A 37633266
    420373 8hlv:B (2.55) BS14 CHL N/A GO:0009765 ... N/A 37633266
    420374 8hlv:B (2.55) BS15 CLA N/A GO:0009765 ... N/A 37633266
    420375 8hlv:B (2.55) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420376 8hlv:B (2.55) BS17 CLA N/A GO:0009765 ... N/A 37633266
    420377 8hlv:B (2.55) BS18 CLA N/A GO:0009765 ... N/A 37633266
    420378 8hlv:B (2.55) BS19 CHL N/A GO:0009765 ... N/A 37633266
    420379 8hlv:B (2.55) BS20 0IE N/A GO:0009765 ... N/A 37633266
    420380 8hlv:B (2.55) BS21 CHL N/A GO:0009765 ... N/A 37633266
    420381 8hlv:C (2.55) BS01 0IE N/A GO:0009765 ... N/A 37633266
    420382 8hlv:C (2.55) BS02 CHL N/A GO:0009765 ... N/A 37633266
    420383 8hlv:C (2.55) BS03 CHL N/A GO:0009765 ... N/A 37633266
    420384 8hlv:C (2.55) BS04 0UR N/A GO:0009765 ... N/A 37633266
    420385 8hlv:C (2.55) BS05 0IE N/A GO:0009765 ... N/A 37633266
    420386 8hlv:C (2.55) BS06 0IE N/A GO:0009765 ... N/A 37633266
    420387 8hlv:C (2.55) BS07 CHL N/A GO:0009765 ... N/A 37633266
    420388 8hlv:C (2.55) BS08 CHL N/A GO:0009765 ... N/A 37633266
    420389 8hlv:C (2.55) BS09 CLA N/A GO:0009765 ... N/A 37633266
    420390 8hlv:C (2.55) BS10 CLA N/A GO:0009765 ... N/A 37633266
    420391 8hlv:C (2.55) BS11 CHL N/A GO:0009765 ... N/A 37633266
    420392 8hlv:C (2.55) BS12 CHL N/A GO:0009765 ... N/A 37633266
    420393 8hlv:C (2.55) BS13 CHL N/A GO:0009765 ... N/A 37633266
    420394 8hlv:C (2.55) BS14 CHL N/A GO:0009765 ... N/A 37633266
    420395 8hlv:C (2.55) BS15 CHL N/A GO:0009765 ... N/A 37633266
    420396 8hlv:C (2.55) BS16 CLA N/A GO:0009765 ... N/A 37633266
    420397 8hlv:C (2.55) BS17 CLA N/A GO:0009765 ... N/A 37633266
    420398 8hlv:C (2.55) BS18 CLA N/A GO:0009765 ... N/A 37633266
    420399 8hlv:C (2.55) BS19 CLA N/A GO:0009765 ... N/A 37633266
    420400 8hlv:C (2.55) BS20 CHL N/A GO:0009765 ... N/A 37633266
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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