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BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    419801 8hh3:A (4.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419802 8hh3:B (4.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419803 8hh3:C (4.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419804 8hh3:D (4.3) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419805 8hh3:E (4.3) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419806 8hh3:F (4.3) BS02 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419807 8hh4:A (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419808 8hh4:B (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419809 8hh4:C (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419810 8hh4:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419811 8hh4:E (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419812 8hh4:F (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419813 8hh5:A (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419814 8hh5:B (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419815 8hh5:C (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419816 8hh5:D (2.9) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419817 8hh5:E (2.9) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419818 8hh5:F (2.9) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419819 8hh6:A (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419820 8hh6:B (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419821 8hh6:B (2.9) BS02 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419822 8hh6:C (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419823 8hh6:D (2.9) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419824 8hh6:E (2.9) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419825 8hh6:F (2.9) BS02 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419826 8hh7:A (2.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419827 8hh7:B (2.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419828 8hh7:B (2.5) BS02 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419829 8hh7:C (2.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419830 8hh7:C (2.5) BS02 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419831 8hh7:D (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419832 8hh7:F (2.5) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419833 8hh8:A (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419834 8hh8:B (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419835 8hh8:C (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419836 8hh8:D (2.8) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419837 8hh8:F (2.8) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419838 8hh9:A (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419839 8hh9:B (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419840 8hh9:B (3.6) BS02 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419841 8hh9:C (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419842 8hh9:D (3.6) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419843 8hh9:F (3.6) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419844 8hha:A (3.4) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419845 8hha:B (3.4) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419846 8hha:B (3.4) BS02 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419847 8hha:C (3.4) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419848 8hha:D (3.4) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419849 8hha:F (3.4) BS02 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419850 8hhb:A (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419851 8hhb:B (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419852 8hhb:B (3.5) BS02 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419853 8hhb:C (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419854 8hhb:D (3.5) BS01 ADP 7.1.2.2 GO:0005515 ... P07677 N/A
    419855 8hhb:F (3.5) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419856 8hhc:A (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419857 8hhc:B (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419858 8hhc:C (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 N/A
    419859 8hhc:D (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419860 8hhc:F (3.3) BS02 ATP 7.1.2.2 GO:0005515 ... P07677 N/A
    419861 8hho:A (3.2) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 37682540
    419862 8hhp:A (2.45) BS01 NZA ? GO:0003677 ... P37231 36994595
    419863 8hhp:A (2.45) BS02 LRG ? GO:0003677 ... P37231 36994595
    419864 8hhp:A (2.45) BS03 LRG ? GO:0003677 ... P37231 36994595
    419865 8hhq:A (2.4) BS01 GOA ? GO:0003677 ... P37231 36994595
    419866 8hhq:B (2.4) BS01 GOA ? GO:0003677 ... P37231 36994595
    419867 8hht:A (1.95) BS01 LV0 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTC1 36928316
    419868 8hhu:A (2.258) BS01 LVX 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69    		 GO:0008233 ... P0DTC1 36928316
    419869 8hi5:A (2.3) BS01 FK2 ? N/A A7NN59 37278533
    419870 8hi5:A (2.3) BS02 NAP ? N/A A7NN59 37278533
    419871 8hi6:A (2.0) BS01 FK2 ? N/A A7NN59 37278533
    419872 8hi6:A (2.0) BS02 NAP ? N/A A7NN59 37278533
    419873 8hi9:A (2.28) BS01 LKR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37259339
    419874 8hi9:B (2.28) BS01 LKR 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37259339
    419875 8hic:A (1.6) BS01 URE ? GO:0046872 ... Q7V3V9 37380083
    419876 8hid:A (2.2) BS01 LLR 1.11.1.6 GO:0000302 ... P04040 37216701
    419877 8hid:A (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    419878 8hid:B (2.2) BS01 LLR 1.11.1.6 GO:0000302 ... P04040 37216701
    419879 8hid:B (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    419880 8hid:C (2.2) BS01 LLR 1.11.1.6 GO:0000302 ... P04040 37216701
    419881 8hid:C (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    419882 8hid:D (2.2) BS01 LLR 1.11.1.6 GO:0000302 ... P04040 37216701
    419883 8hid:D (2.2) BS02 HEM 1.11.1.6 GO:0000302 ... P04040 37216701
    419884 8hij:A (3.54) BS01 THH ? GO:0005506 ... P0ABE7
    P41440    		 36575193
    419885 8hik:A (3.72) BS01 TPP ? GO:0005506 ... P0ABE7
    P41440    		 36575193
    419886 8hin:A (3.3) BS02 LN9 ? GO:0000017 ... P31639 38057552
    419887 8hip:A (2.77) BS01 6OU ? GO:0016020 ... Q9GZC8 38664565
    419888 8hip:A (2.77) BS02 6OU ? GO:0016020 ... Q9GZC8 38664565
    419889 8hip:B (2.77) BS01 6OU ? GO:0016020 ... Q9GZC8 38664565
    419890 8hip:B (2.77) BS02 6OU ? GO:0016020 ... Q9GZC8 38664565
    419891 8hiq:A (3.2) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 37682540
    419892 8hiv:A (2.20003) BS01 AKG N/A N/A N/A N/A
    419893 8hiz:A (3.08) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 37682540
    419894 8hj5:F (3.0) BS01 U2U ? GO:0004888 ... P0ABE7
    Q96LB2    		 37347749
    419895 8hj9:A (3.12) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 37682540
    419896 8hja:A (2.38) BS01 C2E ? GO:0000166 ... P74113 36947515
    419897 8hja:A (2.38) BS02 C2E ? GO:0000166 ... P74113 36947515
    419898 8hja:B (2.38) BS01 C2E ? GO:0000166 ... P74113 36947515
    419899 8hja:B (2.38) BS02 C2E ? GO:0000166 ... P74113 36947515
    419900 8hjb:A (2.65) BS01 COA ? GO:0000976 ... A0A0H2ZBS8 36744476
    419901 8hje:A (2.85) BS01 VIS 3.4.19.12 GO:0004843 ... Q96RU2 37075624
    419902 8hjf:A (2.0) BS01 M1K N/A N/A N/A 39080270
    419903 8hjf:A (2.0) BS02 UDP N/A N/A N/A 39080270
    419904 8hjf:B (2.0) BS01 M1K N/A N/A N/A 39080270
    419905 8hjf:B (2.0) BS02 UDP N/A N/A N/A 39080270
    419906 8hjg:A (1.7) BS01 POG N/A N/A N/A 39080270
    419907 8hjg:A (1.7) BS02 M1K N/A N/A N/A 39080270
    419908 8hjg:A (1.7) BS03 UDP N/A N/A N/A 39080270
    419909 8hjg:B (1.7) BS01 M1K N/A N/A N/A 39080270
    419910 8hjg:B (1.7) BS02 UDP N/A N/A N/A 39080270
    419911 8hjh:A (1.76) BS01 POG N/A N/A N/A 39080270
    419912 8hjh:A (1.76) BS02 M0O N/A N/A N/A 39080270
    419913 8hjh:A (1.76) BS03 UDP N/A N/A N/A 39080270
    419914 8hjh:B (1.76) BS01 POG N/A N/A N/A 39080270
    419915 8hjh:B (1.76) BS02 M0O N/A N/A N/A 39080270
    419916 8hjh:B (1.76) BS03 UDP N/A N/A N/A 39080270
    419917 8hjk:A (1.833) BS01 M0O N/A N/A N/A 39080270
    419918 8hjk:A (1.833) BS02 M0O N/A N/A N/A 39080270
    419919 8hjk:A (1.833) BS03 UDP N/A N/A N/A 39080270
    419920 8hjl:A (1.72) BS01 UDP N/A N/A N/A 39080270
    419921 8hjl:A (1.72) BS02 POG N/A N/A N/A 39080270
    419922 8hjl:A (1.72) BS03 M7F N/A N/A N/A 39080270
    419923 8hjl:A (1.72) BS04 M7F N/A N/A N/A 39080270
    419924 8hjl:B (1.72) BS01 UDP N/A N/A N/A 39080270
    419925 8hjl:B (1.72) BS02 POG N/A N/A N/A 39080270
    419926 8hjl:B (1.72) BS03 M7F N/A N/A N/A 39080270
    419927 8hjl:B (1.72) BS04 M7F N/A N/A N/A 39080270
    419928 8hjn:A (3.2) BS01 UPG N/A N/A N/A 39080270
    419929 8hjn:B (3.2) BS01 UPG N/A N/A N/A 39080270
    419930 8hjo:A (1.64) BS01 UDP N/A N/A N/A 39080270
    419931 8hjo:B (1.64) BS01 UDP N/A N/A N/A 39080270
    419932 8hjp:A (2.2) BS01 POG N/A N/A N/A 39080270
    419933 8hjp:A (2.2) BS02 UDP N/A N/A N/A 39080270
    419934 8hjp:B (2.2) BS01 UDP N/A N/A N/A 39080270
    419935 8hjt:A (2.91) BS01 H6P ? N/A A0A6J0B3M7 37674084
    419936 8hjt:B (2.91) BS01 H6P ? N/A A0A6J0B3M7 37674084
    419937 8hjt:C (2.91) BS01 H6P ? N/A A0A345DF50 37674084
    419938 8hjt:D (2.91) BS01 H6P ? N/A A0A345DF50 37674084
    419939 8hju:0 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419940 8hju:0 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    419941 8hju:0 (2.8) BS03 KGD ? GO:0005886 ... A7NQE9 37737710
    419942 8hju:0 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    419943 8hju:0 (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    419944 8hju:1 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419945 8hju:1 (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    419946 8hju:1 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    419947 8hju:1 (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    419948 8hju:1 (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    419949 8hju:2 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419950 8hju:2 (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    419951 8hju:2 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    419952 8hju:2 (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    419953 8hju:2 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    419954 8hju:2 (2.8) BS06 BCL ? GO:0005886 ... A7NQE9 37737710
    419955 8hju:3 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419956 8hju:3 (2.8) BS02 KGD ? GO:0005886 ... Q83XD1 37737710
    419957 8hju:3 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    419958 8hju:4 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419959 8hju:4 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    419960 8hju:4 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    419961 8hju:4 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    419962 8hju:4 (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    419963 8hju:5 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419964 8hju:5 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    419965 8hju:5 (2.8) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    419966 8hju:5 (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    419967 8hju:5 (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    419968 8hju:6 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419969 8hju:6 (2.8) BS02 KGD ? GO:0005886 ... A7NQE9 37737710
    419970 8hju:6 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    419971 8hju:6 (2.8) BS04 BCL ? GO:0005886 ... A7NQE9 37737710
    419972 8hju:6 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    419973 8hju:7 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419974 8hju:7 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    419975 8hju:7 (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    419976 8hju:7 (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    419977 8hju:8 (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419978 8hju:8 (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    419979 8hju:8 (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    419980 8hju:8 (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    419981 8hju:8 (2.8) BS05 KGD ? GO:0005886 ... A7NQE9 37737710
    419982 8hju:9 (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419983 8hju:9 (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    419984 8hju:9 (2.8) BS03 KGD ? GO:0005886 ... Q83XD1 37737710
    419985 8hju:9 (2.8) BS04 BCL ? GO:0005886 ... Q83XD1 37737710
    419986 8hju:9 (2.8) BS05 BCL ? GO:0005886 ... Q83XD1 37737710
    419987 8hju:A (2.8) BS01 BCL ? GO:0005886 ... Q83XD1 37737710
    419988 8hju:A (2.8) BS02 BCL ? GO:0005886 ... Q83XD1 37737710
    419989 8hju:A (2.8) BS03 BCL ? GO:0005886 ... Q83XD1 37737710
    419990 8hju:A (2.8) BS04 KGD ? GO:0005886 ... Q83XD1 37737710
    419991 8hju:A (2.8) BS05 KGD ? GO:0005886 ... Q83XD1 37737710
    419992 8hju:A (2.8) BS06 BCL ? GO:0005886 ... Q83XD1 37737710
    419993 8hju:B (2.8) BS01 BCL ? GO:0005886 ... A7NQE9 37737710
    419994 8hju:B (2.8) BS02 BCL ? GO:0005886 ... A7NQE9 37737710
    419995 8hju:B (2.8) BS03 BCL ? GO:0005886 ... A7NQE9 37737710
    419996 8hju:B (2.8) BS04 KGD ? GO:0005886 ... A7NQE9 37737710
    419997 8hju:B (2.8) BS05 BCL ? GO:0005886 ... A7NQE9 37737710
    419998 8hju:C (2.8) BS01 KGD ? GO:0005506 ... A7NQE7 37737710
    419999 8hju:C (2.8) BS02 BCL ? GO:0005506 ... A7NQE7 37737710
    420000 8hju:C (2.8) BS03 KGD ? GO:0005506 ... A7NQE7 37737710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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