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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 460725 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    419201 8h7x:A (3.404) BS01 6GY 2.7.10.1 GO:0004672 ... P00533 38396251
    419202 8h7y:A (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    419203 8h7y:A (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    419204 8h7y:B (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    419205 8h7y:B (2.14) BS03 PRO ? GO:0046872 ... S5TUM1 36974966
    419206 8h81:A (1.84) BS01 HYP ? GO:0046872 ... S5TUM1 36974966
    419207 8h82:A (1.93) BS01 4WI 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37696289
    419208 8h85:A (2.38) BS01 HY3 ? GO:0046872 ... S5TUM1 36974966
    419209 8h86:A (2.56) BS01 RET N/A GO:0016020 ... N/A 37652010
    419210 8h87:A (2.53) BS01 RET N/A GO:0016020 ... N/A 37652010
    419211 8h8i:A (2.03) BS01 KZO N/A N/A N/A 37749089
    419212 8h8j:C (3.2) BS01 WYB ? GO:0004930 ... Q9HC97 36543774
    419213 8h8j:C (3.2) BS02 CLR ? GO:0004930 ... Q9HC97 36543774
    419214 8h8j:C (3.2) BS03 CLR ? GO:0004930 ... Q9HC97 36543774
    419215 8h8r:A (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419216 8h8r:A (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419217 8h8r:A (1.7) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419218 8h8r:A (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419219 8h8r:A (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419220 8h8r:B (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    419221 8h8r:B (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    419222 8h8r:B (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419223 8h8r:B (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419224 8h8r:C (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419225 8h8r:C (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419226 8h8r:C (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419227 8h8r:C (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419228 8h8r:C (1.7) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419229 8h8r:D (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    419230 8h8r:H (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    419231 8h8r:J (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    419232 8h8r:J (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    419233 8h8r:L (1.7) BS01 DMU ? GO:0006123 ... P00430 36708913
    419234 8h8r:M (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    419235 8h8r:M (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    419236 8h8r:N (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419237 8h8r:N (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419238 8h8r:N (1.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419239 8h8r:N (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419240 8h8r:N (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419241 8h8r:O (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    419242 8h8r:O (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    419243 8h8r:O (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419244 8h8r:P (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419245 8h8r:P (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419246 8h8r:P (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419247 8h8r:P (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419248 8h8r:Q (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    419249 8h8r:U (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    419250 8h8r:W (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    419251 8h8r:W (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    419252 8h8r:Z (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    419253 8h8r:Z (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    419254 8h8s:A (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419255 8h8s:A (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419256 8h8s:A (1.7) BS06 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419257 8h8s:A (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419258 8h8s:A (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419259 8h8s:B (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    419260 8h8s:B (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    419261 8h8s:B (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419262 8h8s:B (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419263 8h8s:C (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419264 8h8s:C (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419265 8h8s:C (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419266 8h8s:C (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419267 8h8s:C (1.7) BS05 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419268 8h8s:D (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    419269 8h8s:G (1.7) BS01 DMU ? GO:0005743 ... P07471 36708913
    419270 8h8s:H (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    419271 8h8s:J (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    419272 8h8s:J (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    419273 8h8s:L (1.7) BS01 DMU ? GO:0006123 ... P00430 36708913
    419274 8h8s:M (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    419275 8h8s:M (1.7) BS02 DMU ? GO:0006123 ... P10175 36708913
    419276 8h8s:N (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419277 8h8s:N (1.7) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419278 8h8s:N (1.7) BS03 HEA 7.1.1.9 GO:0004129 ... P00396 36708913
    419279 8h8s:N (1.7) BS07 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419280 8h8s:N (1.7) BS08 DMU 7.1.1.9 GO:0004129 ... P00396 36708913
    419281 8h8s:O (1.7) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 36708913
    419282 8h8s:O (1.7) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 36708913
    419283 8h8s:O (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P68530 36708913
    419284 8h8s:P (1.7) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419285 8h8s:P (1.7) BS02 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419286 8h8s:P (1.7) BS03 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419287 8h8s:P (1.7) BS04 DMU 7.1.1.9 GO:0004129 ... P00415 36708913
    419288 8h8s:Q (1.7) BS01 DMU ? GO:0006123 ... P00423 36708913
    419289 8h8s:T (1.7) BS01 DMU ? GO:0005743 ... P07471 36708913
    419290 8h8s:U (1.7) BS01 DMU ? GO:0005739 ... P00429 36708913
    419291 8h8s:W (1.7) BS01 DMU ? GO:0006123 ... P07470 36708913
    419292 8h8s:W (1.7) BS02 DMU ? GO:0006123 ... P07470 36708913
    419293 8h8s:Y (1.7) BS01 DMU ? GO:0006123 ... P00430 36708913
    419294 8h8s:Z (1.7) BS01 DMU ? GO:0006123 ... P10175 36708913
    419295 8h98:A (2.5) BS01 X5V 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419296 8h98:B (2.5) BS01 X5V 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419297 8h99:A (1.94) BS01 ATP 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419298 8h99:B (1.94) BS01 ATP 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419299 8h9a:A (1.9) BS01 X5V 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419300 8h9b:A (2.23) BS01 X5V 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419301 8h9c:A (2.15) BS01 X5V 6.1.1.3 GO:0000166 ... P0A8M3 36707692
    419302 8h9e:A (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419303 8h9e:B (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419304 8h9e:C (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419305 8h9e:D (2.53) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419306 8h9e:E (2.53) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419307 8h9e:F (2.53) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419308 8h9i:A (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419309 8h9i:B (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419310 8h9i:C (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419311 8h9i:D (2.77) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419312 8h9i:E (2.77) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419313 8h9i:F (2.77) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419314 8h9l:A (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419315 8h9l:B (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419316 8h9l:C (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419317 8h9l:D (2.61) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419318 8h9l:E (2.61) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419319 8h9l:F (2.61) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419320 8h9p:A (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419321 8h9p:B (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419322 8h9p:B (3.02) BS03 ADP ? GO:0001937 ... P25705 37244256
    419323 8h9p:C (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419324 8h9p:D (3.02) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419325 8h9p:E (3.02) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419326 8h9p:F (3.02) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419327 8h9s:A (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419328 8h9s:B (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419329 8h9s:C (2.53) BS01 ATP ? GO:0001937 ... P25705 37244256
    419330 8h9s:D (2.53) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419331 8h9s:E (2.53) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419332 8h9s:F (2.53) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419333 8h9t:A (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419334 8h9t:B (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419335 8h9t:C (2.77) BS01 ATP ? GO:0001937 ... P25705 37244256
    419336 8h9t:D (2.77) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419337 8h9t:E (2.77) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419338 8h9t:F (2.77) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419339 8h9u:A (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419340 8h9u:B (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419341 8h9u:C (2.61) BS01 ATP ? GO:0001937 ... P25705 37244256
    419342 8h9u:D (2.61) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419343 8h9u:E (2.61) BS01 ATP 7.1.2.2 GO:0001525 ... P06576 37244256
    419344 8h9u:F (2.61) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419345 8h9v:A (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419346 8h9v:B (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419347 8h9v:B (3.02) BS03 ADP ? GO:0001937 ... P25705 37244256
    419348 8h9v:C (3.02) BS01 ATP ? GO:0001937 ... P25705 37244256
    419349 8h9v:D (3.02) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419350 8h9v:F (3.02) BS01 ADP 7.1.2.2 GO:0001525 ... P06576 37244256
    419351 8h9w:A (2.7) BS01 1N7 ? GO:0001518 ... A8EVM5 37454189
    419352 8ha0:R (2.62) BS01 CLR ? GO:0004888 ... Q03431 36482086
    419353 8ha0:R (2.62) BS02 CLR ? GO:0004888 ... Q03431 36482086
    419354 8ha0:R (2.62) BS03 CLR ? GO:0004888 ... Q03431 36482086
    419355 8ha0:R (2.62) BS04 CLR ? GO:0004888 ... Q03431 36482086
    419356 8hac:A (2.32) BS01 ADP 3.6.-.- GO:0005524 ... B7G933 38867239
    419357 8hac:B (2.32) BS01 ADP 3.6.-.- GO:0005524 ... B7G933 38867239
    419358 8haf:R (3.25) BS01 CLR ? GO:0004888 ... Q03431 36482086
    419359 8haf:R (3.25) BS02 CLR ? GO:0004888 ... Q03431 36482086
    419360 8haf:R (3.25) BS03 CLR ? GO:0004888 ... Q03431 36482086
    419361 8hap:A (2.2) BS01 NA7 1.2.1.79 GO:0008911 ... Q976X5 37227376
    419362 8hap:B (2.2) BS01 ATR 1.2.1.79 GO:0008911 ... Q976X5 37227376
    419363 8haq:A (2.27) BS01 L1N 2.7.10.2 GO:0004672 ... P12931 N/A
    419364 8haq:B (2.27) BS01 L1N 2.7.10.2 GO:0004672 ... P12931 N/A
    419365 8har:A (2.12) BS01 SAH ? GO:0008168 ... Q2L6E4 N/A
    419366 8har:B (2.12) BS01 SAH ? GO:0008168 ... Q2L6E4 N/A
    419367 8has:A (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419368 8has:B (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419369 8has:C (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419370 8has:D (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419371 8has:E (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419372 8has:F (2.89) BS01 ATP ? GO:0005634 ... B4XT64 N/A
    419373 8hau:A (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419374 8hau:B (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419375 8hau:C (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419376 8hau:D (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419377 8hau:E (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419378 8hau:F (3.02) BS01 ATP ? N/A A2XXI5 N/A
    419379 8hav:A (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    419380 8haw:B (2.1) BS01 GOL 3.1.4.3 GO:0004629 ... Q9SRQ7 36635324
    419381 8hay:A (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    419382 8hay:B (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    419383 8hay:C (2.74) BS01 KYL N/A GO:0006508 ... N/A 37535747
    419384 8hb0:A (2.9) BS02 KZ3 ? GO:0000017 ... P31639 38057552
    419385 8hb2:B (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    419386 8hb2:C (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    419387 8hb5:A (2.6) BS04 L6N ? N/A E1BHM0 37521780
    419388 8hb9:AAA (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    419389 8hb9:AAA (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    419390 8hb9:BBB (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    419391 8hb9:BBB (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    419392 8hb9:CCC (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    419393 8hb9:CCC (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    419394 8hb9:DDD (2.8) BS01 R1R 1.1.1.42 GO:0000287 ... O75874 37209613
    419395 8hb9:DDD (2.8) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 37209613
    419396 8hbe:B (3.2) BS01 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    419397 8hbf:A (3.1) BS01 G2P 4.6.1.2 GO:0004383 ... Q02108 36972843
    419398 8hbf:A (3.1) BS04 GZO 4.6.1.2 GO:0004383 ... Q02108 36972843
    419399 8hbf:B (3.1) BS01 G2P 4.6.1.2 GO:0004016 ... Q02153 36972843
    419400 8hbf:B (3.1) BS02 HEM 4.6.1.2 GO:0004016 ... Q02153 36972843
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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