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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 39065 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • The sequence is converted from residues with experimentally determined coordinates in the structure; residues not observed in the 3D structure are excluded.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (resolution)     		Site
    #     		Peptide
    sequence         		EC
    number     		GO
    terms     		UniProt PubMed Binding
    affinity
    19801 5vk0:W
    (1.8)    		 BS01 >5vk0:X (identical to 5vk0:B, 5vk0:D, 5vk0:F, 5vk0:H, 5vk0:J, 5vk0:L, 5vk0:N, 5vk0:P, 5vk0:R, 5vk0:T, 5vk0:V)
    TSFAEYWKLLSC
    		 2.3.2.27 GO:0005634 ... Q00987 30809370
    19802 5vk1:A
    (2.69)    		 BS01 >5vk1:B (identical to 5vk1:D, 5vk1:J)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19803 5vk1:A
    (2.69)    		 BS02 >5vk1:J (identical to 5vk1:B, 5vk1:D)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19804 5vk1:C
    (2.69)    		 BS01 >5vk1:D (identical to 5vk1:B, 5vk1:J)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19805 5vk1:E
    (2.69)    		 BS01 >5vk1:D (identical to 5vk1:B, 5vk1:J)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19806 5vk1:E
    (2.69)    		 BS02 >5vk1:F (identical to 5vk1:P)
    TSFKEYWCLL
    		 ? GO:0005634 ... O15151 30809370
    19807 5vk1:G
    (2.69)    		 BS01 >5vk1:H (identical to 5vk1:L, 5vk1:N)
    TSFKEYWCLLS
    		 ? GO:0005634 ... O15151 30809370
    19808 5vk1:I
    (2.69)    		 BS01 >5vk1:B (identical to 5vk1:D, 5vk1:J)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19809 5vk1:I
    (2.69)    		 BS02 >5vk1:J (identical to 5vk1:B, 5vk1:D)
    TSFKEYWCLLSP
    		 ? GO:0005634 ... O15151 30809370
    19810 5vk1:K
    (2.69)    		 BS01 >5vk1:L (identical to 5vk1:H, 5vk1:N)
    TSFKEYWCLLS
    		 ? GO:0005634 ... O15151 30809370
    19811 5vk1:M
    (2.69)    		 BS01 >5vk1:N (identical to 5vk1:H, 5vk1:L)
    TSFKEYWCLLS
    		 ? GO:0005634 ... O15151 30809370
    19812 5vk1:O
    (2.69)    		 BS01 >5vk1:P (identical to 5vk1:F)
    TSFKEYWCLL
    		 ? GO:0005634 ... O15151 30809370
    19813 5vkl:A
    (2.198)    		 BS01 >5vkl:B
    LVNADLDVKDELMFSPLVDS
    		 ? GO:0140673 ... P23615 28826505
    19814 5vla:A
    (2.4)    		 BS01 >5vla:Z
    TVFTSWEEYLDWVMPWNLVRIGLL
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19815 5vlh:A
    (2.86)    		 BS01 >5vlh:Y
    CRLPWNLQRIGLPC
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19816 5vlh:A
    (2.86)    		 BS02 >5vlh:Z (identical to 4nmx:Z, 5vlk:Y, 5vll:Z)
    TVFTSWEEYLDWV
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19817 5vlk:A
    (2.2)    		 BS01 >5vlk:Y (identical to 4nmx:Z, 5vlh:Z, 5vll:Z)
    TVFTSWEEYLDWV
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19818 5vlk:A
    (2.2)    		 BS02 >5vlk:Z
    WNLVRIGLL
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19819 5vll:A
    (2.37)    		 BS01 >5vll:Y
    CFIPWNLQRIGLLC
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19820 5vll:A
    (2.37)    		 BS02 >5vll:Z (identical to 4nmx:Z, 5vlh:Z, 5vlk:Y)
    TVFTSWEEYLDWV
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19821 5vlp:A
    (2.9)    		 BS01 >5vlp:Z
    MESFPGWNLVRIGLLR
    		 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    19822 5vmo:A
    (1.7)    		 BS01 >5vmo:B
    ALPPEMVVARELRRIGDEFNRLYC
    		 ? GO:0042981 ... Q5GAF0 29483196
    19823 5vnb:A
    (2.4)    		 BS01 >5vnb:K
    ATKAARKSAP
    		 ? GO:0006355 ... O95619 30071723
    19824 5vnb:B
    (2.4)    		 BS01 >5vnb:K
    ATKAARKSAP
    		 ? GO:0006355 ... O95619 30071723
    19825 5vnb:D
    (2.4)    		 BS01 >5vnb:K
    ATKAARKSAP
    		 ? GO:0006355 ... O95619 30071723
    19826 5vne:B
    (2.698)    		 BS01 >5vne:D
    SLV
    		 ? GO:0006886 ... O95486 28594326
    19827 5vnf:B
    (2.407)    		 BS01 >5vnf:D
    VTSVV
    		 ? GO:0006886 ... O95486 28594326
    19828 5vng:B
    (2.6)    		 BS01 >5vng:D
    TSII
    		 ? GO:0006886 ... O95486 28594326
    19829 5vnh:B
    (2.6)    		 BS01 >5vnh:D
    SSV
    		 ? GO:0006886 ... O95486 28594326
    19830 5vni:B
    (2.788)    		 BS01 >5vni:D
    SFA
    		 ? GO:0006886 ... O95486 28594326
    19831 5vnj:B
    (2.806)    		 BS01 >5vnj:D (identical to 8hot:C, 8hot:D, 8hou:C, 8hou:D, 7y0t:C, 7y0t:D, 7y0u:C, 7y0u:D)
    FF
    		 ? GO:0006886 ... O95486 28594326
    19832 5vnk:B
    (2.55)    		 BS01 >5vnk:D
    SLL
    		 ? GO:0006886 ... O95486 28594326
    19833 5vqi:B
    (2.501)    		 BS01 >5vqi:A
    SSKRQRR
    		 ? GO:0005737 ... Q9C2K9 29054975
    19834 5vqi:B
    (2.501)    		 BS02 >5vqi:C (identical to 6p6a:C)
    SKRQRR
    		 ? GO:0005737 ... Q9C2K9 29054975
    19835 5vs7:A
    (2.04)    		 BS01 >5vs7:P
    GRGKG
    		 ? N/A Q8IK82 N/A
    19836 5vt9:A
    (1.85)    		 BS01 >5vt9:D
    TPFIIRAQAHIRRHLVDNNVSPATVQPA
    		 ? GO:0005509 ... Q95UJ7 28972141
    19837 5vt9:B
    (1.85)    		 BS01 >5vt9:D
    TPFIIRAQAHIRRHLVDNNVSPATVQPA
    		 ? GO:0005509 ... Q95UJ7 28972141
    19838 5vtb:A
    (2.4)    		 BS01 >5vtb:B
    RRKQGKPQHLSKRE
    		 ? GO:0000118 ... Q09028 29263092
    19839 5vud:A
    (2.0)    		 BS01 >5vud:C (identical to 5vvp:C, 5vwh:C)
    LSSPVTKSW
    		 ? N/A P01889 30410026
    19840 5vue:A
    (1.8)    		 BS01 >5vue:C (identical to 5vwd:C, 5vwj:C)
    LTVQVARVW
    		 ? N/A P01889 30410026
    19841 5vuf:A
    (1.9)    		 BS01 >5vuf:C (identical to 5vwf:C)
    LTVQVARVY
    		 ? N/A P01889 30410026
    19842 5vvp:A
    (2.0)    		 BS01 >5vvp:C (identical to 5vud:C, 5vwh:C)
    LSSPVTKSW
    		 ? N/A I3ZN84 30410026
    19843 5vvt:A
    (2.8)    		 BS01 >5vvt:B
    TL
    		 3.2.1.169 N/A O60502 28939839
    19844 5vvt:C
    (2.8)    		 BS01 >5vvt:B
    TL
    		 3.2.1.169 N/A O60502 28939839
    19845 5vvt:C
    (2.8)    		 BS02 >5vvt:D
    TLSP
    		 3.2.1.169 N/A O60502 28939839
    19846 5vvu:A
    (2.7)    		 BS01 >5vvu:B (identical to 5vvu:D)
    PYSS
    		 3.2.1.169 N/A O60502 28939839
    19847 5vvu:A
    (2.7)    		 BS02 >5vvu:D (identical to 5vvu:B)
    PYSS
    		 3.2.1.169 N/A O60502 28939839
    19848 5vvu:C
    (2.7)    		 BS01 >5vvu:B (identical to 5vvu:D)
    PYSS
    		 3.2.1.169 N/A O60502 28939839
    19849 5vvu:C
    (2.7)    		 BS02 >5vvu:D (identical to 5vvu:B)
    PYSS
    		 3.2.1.169 N/A O60502 28939839
    19850 5vvv:A
    (2.8)    		 BS01 >5vvv:B
    ST
    		 3.2.1.169 N/A O60502 28939839
    19851 5vvv:C
    (2.8)    		 BS01 >5vvv:B
    ST
    		 3.2.1.169 N/A O60502 28939839
    19852 5vvv:C
    (2.8)    		 BS02 >5vvv:D
    TSTSL
    		 3.2.1.169 N/A O60502 28939839
    19853 5vvx:C
    (2.9)    		 BS01 >5vvx:B
    SSRVT
    		 3.2.1.169 N/A O60502 28939839
    19854 5vvx:C
    (2.9)    		 BS02 >5vvx:D
    SRVT
    		 3.2.1.169 N/A O60502 28939839
    19855 5vwd:A
    (1.8)    		 BS01 >5vwd:C (identical to 5vue:C, 5vwj:C)
    LTVQVARVW
    		 ? N/A P01889 30410026
    19856 5vwf:A
    (1.8)    		 BS01 >5vwf:C (identical to 5vuf:C)
    LTVQVARVY
    		 ? N/A P01889 30410026
    19857 5vwh:A
    (1.648)    		 BS01 >5vwh:C (identical to 5vud:C, 5vvp:C)
    LSSPVTKSW
    		 ? N/A P01889 30410026
    19858 5vwi:A
    (1.75)    		 BS01 >5vwi:C (identical to 5vwi:D, 5vwk:E, 5vwk:F, 5vwk:G, 5vwk:H)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19859 5vwi:B
    (1.75)    		 BS01 >5vwi:D (identical to 5vwi:C, 5vwk:E, 5vwk:F, 5vwk:G, 5vwk:H)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19860 5vwj:A
    (2.0)    		 BS01 >5vwj:C (identical to 5vue:C, 5vwd:C)
    LTVQVARVW
    		 ? N/A P01889 30410026
    19861 5vwk:A
    (2.35)    		 BS01 >5vwk:H (identical to 5vwi:C, 5vwi:D, 5vwk:E, 5vwk:F, 5vwk:G)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19862 5vwk:B
    (2.35)    		 BS01 >5vwk:G (identical to 5vwi:C, 5vwi:D, 5vwk:E, 5vwk:F, 5vwk:H)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19863 5vwk:C
    (2.35)    		 BS01 >5vwk:F (identical to 5vwi:C, 5vwi:D, 5vwk:E, 5vwk:G, 5vwk:H)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19864 5vwk:D
    (2.35)    		 BS01 >5vwk:E (identical to 5vwi:C, 5vwi:D, 5vwk:F, 5vwk:G, 5vwk:H)
    PAWDETNL
    		 ? N/A Q14160 29061852
    19865 5vwv:A
    (1.897)    		 BS01 >5vwv:B (identical to 5vwy:B, 5vx0:B, 5vx2:D)
    DMRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... Q16611 29149594
    19866 5vww:A
    (2.802)    		 BS01 >5vww:C
    MRPEIRIAQELRRIGDEFNATYARR
    		 ? GO:0042981 ... Q16611 29149594
    19867 5vww:B
    (2.802)    		 BS01 >5vww:C
    MRPEIRIAQELRRIGDEFNATYARR
    		 ? GO:0042981 ... Q16611 29149594
    19868 5vww:B
    (2.802)    		 BS02 >5vww:D
    RPEIRIAQELRRIGDEFNA
    		 ? GO:0042981 ... Q16611 29149594
    19869 5vwx:A
    (2.489)    		 BS01 >5vwx:B (identical to 5vwx:D)
    SRIISRIAQELRRIGDEFNATYA
    		 ? GO:0042981 ... Q16611 29149594
    19870 5vwx:C
    (2.489)    		 BS01 >5vwx:D (identical to 5vwx:B)
    SRIISRIAQELRRIGDEFNATYA
    		 ? GO:0042981 ... Q16611 29149594
    19871 5vwy:A
    (1.555)    		 BS01 >5vwy:B (identical to 5vwv:B, 5vx0:B, 5vx2:D)
    DMRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... Q16611 29149594
    19872 5vwz:A
    (1.622)    		 BS01 >5vwz:B (identical to 5vwz:D)
    DMRPEIWIAQELRRIGDEFNAYYARR
    		 ? GO:0042981 ... Q16611 29149594
    19873 5vwz:A
    (1.622)    		 BS02 >5vwz:D (identical to 5vwz:B)
    DMRPEIWIAQELRRIGDEFNAYYARR
    		 ? GO:0042981 ... Q16611 29149594
    19874 5vwz:C
    (1.622)    		 BS01 >5vwz:B (identical to 5vwz:D)
    DMRPEIWIAQELRRIGDEFNAYYARR
    		 ? GO:0042981 ... Q16611 29149594
    19875 5vwz:C
    (1.622)    		 BS02 >5vwz:D (identical to 5vwz:B)
    DMRPEIWIAQELRRIGDEFNAYYARR
    		 ? GO:0042981 ... Q16611 29149594
    19876 5vx0:A
    (1.599)    		 BS01 >5vx0:B (identical to 5vwv:B, 5vwy:B, 5vx2:D)
    DMRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... Q16611 29149594
    19877 5vx0:C
    (1.599)    		 BS01 >5vx0:D
    MRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... Q16611 29149594
    19878 5vx2:A
    (1.851)    		 BS01 >5vx2:B
    RPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... P97287
    Q07820    		 29149594
    19879 5vx2:A
    (1.851)    		 BS02 >5vx2:D (identical to 5vwv:B, 5vwy:B, 5vx0:B)
    DMRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... P97287
    Q07820    		 29149594
    19880 5vx2:C
    (1.851)    		 BS01 >5vx2:B
    RPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... P97287
    Q07820    		 29149594
    19881 5vx2:C
    (1.851)    		 BS02 >5vx2:D (identical to 5vwv:B, 5vwy:B, 5vx0:B)
    DMRPEIRIAQELRRIGDEFNATYAR
    		 ? GO:0042981 ... P97287
    Q07820    		 29149594
    19882 5vx3:A
    (1.945)    		 BS01 >5vx3:B
    MRPEIRIAQELRRIGDEFNAT
    		 ? GO:0042981 ... Q07817 29149594
    19883 5vx3:C
    (1.945)    		 BS01 >5vx3:D (identical to 5vx3:F)
    RPEIRIAQELRRIGDEFNATYA
    		 ? GO:0042981 ... Q07817 29149594
    19884 5vx3:E
    (1.945)    		 BS01 >5vx3:F (identical to 5vx3:D)
    RPEIRIAQELRRIGDEFNATYA
    		 ? GO:0042981 ... Q07817 29149594
    19885 5vx3:G
    (1.945)    		 BS01 >5vx3:H
    MRPEIRIAQELRRIGDEFNATYA
    		 ? GO:0042981 ... Q07817 29149594
    19886 5vxr:H
    (1.4)    		 BS01 >5vxr:P (identical to 4wht:q, 4wht:u)
    LINTNGSWHV
    		 ? N/A Q569X1 29467319
    19887 5vxr:L
    (1.4)    		 BS01 >5vxr:P (identical to 4wht:q, 4wht:u)
    LINTNGSWHV
    		 ? N/A A0A125T908 29467319
    19888 5vy9:A
    (6.7)    		 BS01 >5vy9:P (identical to 6c0f:x, 6cb1:x, 4fby:Y, 4fby:k, 6h8k:P, 4ixq:Y, 4ixr:Y, 4tnh:Y, 4tnh:G, 4tni:Y, 4tni:G, 4tnj:Y, 4tnj:G, 4tnk:Y, 4tnk:G, 6uxv:K, 6uxw:K, 4v62:AY, 4v62:BY, 4v82:AY, 6v8o:2, 6v92:2, 7w3b:v)
    AAAAAAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19889 5vy9:B
    (6.7)    		 BS01 >5vy9:P (identical to 6c0f:x, 6cb1:x, 4fby:Y, 4fby:k, 6h8k:P, 4ixq:Y, 4ixr:Y, 4tnh:Y, 4tnh:G, 4tni:Y, 4tni:G, 4tnj:Y, 4tnj:G, 4tnk:Y, 4tnk:G, 6uxv:K, 6uxw:K, 4v62:AY, 4v62:BY, 4v82:AY, 6v8o:2, 6v92:2, 7w3b:v)
    AAAAAAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19890 5vy9:C
    (6.7)    		 BS01 >5vy9:P (identical to 6c0f:x, 6cb1:x, 4fby:Y, 4fby:k, 6h8k:P, 4ixq:Y, 4ixr:Y, 4tnh:Y, 4tnh:G, 4tni:Y, 4tni:G, 4tnj:Y, 4tnj:G, 4tnk:Y, 4tnk:G, 6uxv:K, 6uxw:K, 4v62:AY, 4v62:BY, 4v82:AY, 6v8o:2, 6v92:2, 7w3b:v)
    AAAAAAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19891 5vy9:D
    (6.7)    		 BS01 >5vy9:P (identical to 6c0f:x, 6cb1:x, 4fby:Y, 4fby:k, 6h8k:P, 4ixq:Y, 4ixr:Y, 4tnh:Y, 4tnh:G, 4tni:Y, 4tni:G, 4tnj:Y, 4tnj:G, 4tnk:Y, 4tnk:G, 6uxv:K, 6uxw:K, 4v62:AY, 4v62:BY, 4v82:AY, 6v8o:2, 6v92:2, 7w3b:v)
    AAAAAAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19892 5vy9:E
    (6.7)    		 BS01 >5vy9:P (identical to 6c0f:x, 6cb1:x, 4fby:Y, 4fby:k, 6h8k:P, 4ixq:Y, 4ixr:Y, 4tnh:Y, 4tnh:G, 4tni:Y, 4tni:G, 4tnj:Y, 4tnj:G, 4tnk:Y, 4tnk:G, 6uxv:K, 6uxw:K, 4v62:AY, 4v62:BY, 4v82:AY, 6v8o:2, 6v92:2, 7w3b:v)
    AAAAAAAAAAAAAAAAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19893 5vya:A
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19894 5vya:B
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19895 5vya:C
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19896 5vya:D
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19897 5vya:E
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19898 5vya:F
    (4.0)    		 BS01 >5vya:P
    AAAAAAAAAAAAAAGAAAAAAAAAAAAA
    		 ? GO:0005515 ... P31539 28619716
    19899 5vyo:A
    (2.49)    		 BS01 >5vyo:E (identical to 5vyo:F, 5vyo:G, 5vyo:H)
    GFSCGF
    		 ? GO:0016491 ... Q63Y08 29440370
    19900 5vyo:A
    (2.49)    		 BS02 >5vyo:F (identical to 5vyo:E, 5vyo:G, 5vyo:H)
    GFSCGF
    		 ? GO:0016491 ... Q63Y08 29440370
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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