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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 1c7i:A (2.0) BS01 CA 3.1.1.- GO:0004104 ... P37967 10535917
    1602 1c7k:A (1.0) BS01 ZN 3.4.24.77 GO:0004222 ... P56406 11132632
    1603 1c7k:A (1.0) BS02 CA 3.4.24.77 GO:0004222 ... P56406 11132632
    1604 1c8d:A (3.0) BS01 CA ? GO:0005198 ... P17455 10884355
    1605 1c8f:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    1606 1c8g:A (3.0) BS01 CA ? GO:0005198 ... P24840 10884355
    1607 1c8i:A (2.0) BS02 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    1608 1c8i:A (2.0) BS03 CA 1.11.1.7 GO:0000302 ... P28313 10915789
    1609 1c8n:A (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    1610 1c8n:A (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    1611 1c8n:A (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    1612 1c8n:B (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    1613 1c8n:B (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    1614 1c8n:C (2.25) BS01 CA ? GO:0005198 ... Q9IPS9 10864506
    1615 1c8n:C (2.25) BS02 CA ? GO:0005198 ... Q9IPS9 10864506
    1616 1c8n:C (2.25) BS03 CA ? GO:0005198 ... Q9IPS9 10864506
    1617 1c8q:A (2.3) BS01 CA 3.2.1.1 GO:0003824 ... P0DUB6 N/A
    1618 1c8t:A (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    1619 1c8t:A (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    1620 1c8t:A (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1621 1c8t:A (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1622 1c8t:A (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1623 1c8t:B (2.6) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    1624 1c8t:B (2.6) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10877850
    1625 1c8t:B (2.6) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1626 1c8t:B (2.6) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1627 1c8t:B (2.6) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    1628 1c8y:A (2.0) BS01 ZN 3.2.1.96 GO:0004553 ... P04067 10595536
    1629 1c9j:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1630 1c9j:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1631 1c9k:C (2.2) BS01 MG 2.7.1.156
    2.7.7.62
    GO:0000166 ... Q05599 10529169
    1632 1c9m:A (1.67) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1633 1c9m:A (1.67) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1634 1c9n:A (1.5) BS01 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1635 1c9n:A (1.5) BS02 CA 3.4.21.62 GO:0004252 ... P29600 10493860
    1636 1c9o:A (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    1637 1c9o:B (1.17) BS01 NA ? GO:0003676 ... P41016 10736231
    1638 1c9p:A (2.8) BS01 CA 3.4.21.4 GO:0004252 ... P00761 10512718
    1639 1c9q:A (-1.00) BS01 ZN 2.3.2.27 N/A P98170 10548111
    1640 1c9u:A (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1641 1c9u:A (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1642 1c9u:A (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1643 1c9u:B (2.2) BS01 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1644 1c9u:B (2.2) BS02 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1645 1c9u:B (2.2) BS03 CA 1.1.5.2 GO:0008876 ... P13650 10508152
    1646 1ca1:A (1.9) BS01 ZN 3.1.4.3 GO:0004629 ... P0C216 9699639
    1647 1ca2:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 3151019
    1648 1ca3:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    1649 1caa:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    1650 1cad:A (1.8) BS01 FE ? GO:0005506 ... P24297 1303768
    1651 1cah:A (1.88) BS01 CO 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1474587
    1652 1cai:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1653 1caj:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1654 1cak:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1655 1cak:A (1.9) BS02 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1656 1cal:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1657 1cam:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7901850
    1658 1cao:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 1336460
    1659 1caq:A (1.8) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    1660 1caq:A (1.8) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 10422833
    1661 1caq:A (1.8) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1662 1caq:A (1.8) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1663 1caq:A (1.8) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    1664 1cay:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299482
    1665 1caz:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 15299482
    1666 1cb4:A (2.3) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    1667 1cb4:A (2.3) BS02 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    1668 1cb4:B (2.3) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    1669 1cb4:B (2.3) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    1670 1cb8:A (1.9) BS03 CA 4.2.2.5 GO:0003824 ... Q59288 10329169
    1671 1cbj:A (1.65) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    1672 1cbj:A (1.65) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    1673 1cbj:B (1.65) BS01 CU 1.15.1.1 GO:0000209 ... P00442 10092461
    1674 1cbj:B (1.65) BS02 ZN 1.15.1.1 GO:0000209 ... P00442 10092461
    1675 1cbx:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P00730 1738164
    1676 1cc0:A (5.0) BS01 MG 3.6.5.2 GO:0000902 ... P61586 10489445
    1677 1cc0:C (5.0) BS01 MG 3.6.5.2 GO:0000902 ... P61586 10489445
    1678 1cc1:L (2.15) BS02 NI 1.12.99.6 GO:0008901 ... P13065 10378275
    1679 1cc1:L (2.15) BS03 FE2 1.12.99.6 GO:0008901 ... P13065 10378275
    1680 1cc3:A (1.65) BS01 CU ? GO:0005507 ... P00282 10231517
    1681 1cc3:A (1.65) BS02 CU ? GO:0005507 ... P00282 10231517
    1682 1cc3:B (1.65) BS01 CU ? GO:0005507 ... P00282 10231517
    1683 1cc3:B (1.65) BS02 CU ? GO:0005507 ... P00282 10231517
    1684 1ccs:A (2.35) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7761440
    1685 1cct:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7761440
    1686 1ccu:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 7761440
    1687 1cdg:A (2.0) BS06 CA 2.4.1.19 GO:0003824 ... P43379 8107143
    1688 1cdg:A (2.0) BS07 CA 2.4.1.19 GO:0003824 ... P43379 8107143
    1689 1cdk:A (2.0) BS02 MN 2.7.11.11 GO:0001669 ... P36887 8384554
    1690 1cdk:B (2.0) BS02 MN 2.7.11.11 GO:0001669 ... P36887 8384554
    1691 1cdl:A (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    1692 1cdl:A (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    1693 1cdl:A (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    1694 1cdl:A (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    1695 1cdl:B (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    1696 1cdl:B (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    1697 1cdl:B (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    1698 1cdl:B (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    1699 1cdl:C (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    1700 1cdl:C (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    1701 1cdl:C (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    1702 1cdl:C (2.0) BS06 CA ? GO:0000086 ... P0DP23 1519061
    1703 1cdl:D (2.0) BS02 CA ? GO:0000086 ... P0DP23 1519061
    1704 1cdl:D (2.0) BS03 CA ? GO:0000086 ... P0DP23 1519061
    1705 1cdl:D (2.0) BS04 CA ? GO:0000086 ... P0DP23 1519061
    1706 1cdl:D (2.0) BS05 CA ? GO:0000086 ... P0DP23 1519061
    1707 1cdm:A (2.0) BS02 CA ? GO:0000922 ... P62157 8259515
    1708 1cdm:A (2.0) BS03 CA ? GO:0000922 ... P62157 8259515
    1709 1cdm:A (2.0) BS04 CA ? GO:0000922 ... P62157 8259515
    1710 1cdm:A (2.0) BS05 CA ? GO:0000922 ... P62157 8259515
    1711 1cdo:A (2.05) BS01 ZN 1.1.1.1 GO:0004022 ... P26325 8845755
    1712 1cdo:A (2.05) BS02 ZN 1.1.1.1 GO:0004022 ... P26325 8845755
    1713 1cdo:B (2.05) BS01 ZN 1.1.1.1 GO:0004022 ... P26325 8845755
    1714 1cdo:B (2.05) BS02 ZN 1.1.1.1 GO:0004022 ... P26325 8845755
    1715 1cdp:A (1.6) BS01 CD ? GO:0005509 ... P02618 2777802
    1716 1cdp:A (1.6) BS02 CD ? GO:0005509 ... P02618 2777802
    1717 1ce2:A (2.5) BS01 FE 3.4.21.- GO:0001503 ... O77698 10531476
    1718 1ce2:A (2.5) BS02 FE 3.4.21.- GO:0001503 ... O77698 10531476
    1719 1ce5:A (1.9) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10651279
    1720 1ce8:A (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1721 1ce8:A (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1722 1ce8:A (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1723 1ce8:C (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1724 1ce8:C (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1725 1ce8:C (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1726 1ce8:E (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1727 1ce8:E (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1728 1ce8:E (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1729 1ce8:G (2.1) BS01 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1730 1ce8:G (2.1) BS02 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1731 1ce8:G (2.1) BS03 MN 6.3.4.16
    6.3.5.5
    GO:0000166 ... P00968 10428826
    1732 1cee:A (-1.00) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10360578
    1733 1ceh:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7703854
    1734 1cel:A (1.8) BS02 CA 3.2.1.91 GO:0004553 ... P62694 8036495
    1735 1cev:A (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1736 1cev:A (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1737 1cev:B (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1738 1cev:B (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1739 1cev:C (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1740 1cev:C (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1741 1cev:D (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1742 1cev:D (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1743 1cev:E (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1744 1cev:E (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1745 1cev:F (2.4) BS01 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1746 1cev:F (2.4) BS02 MN 3.5.3.1 GO:0000050 ... P53608 10196128
    1747 1cf4:A (-1.00) BS01 MG 3.6.5.2 GO:0000139 ... P60953 10360579
    1748 1cff:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 10493800
    1749 1cff:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 10493800
    1750 1cff:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 10493800
    1751 1cff:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 10493800
    1752 1cfv:L (2.1) BS01 ZN ? GO:0002250 ... P01631 9261086
    1753 1cfv:L (2.1) BS02 ZN ? GO:0002250 ... P01631 9261086
    1754 1cfz:A (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1755 1cfz:B (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1756 1cfz:C (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1757 1cfz:D (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1758 1cfz:E (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1759 1cfz:F (2.2) BS01 CD 3.4.23.- GO:0004175 ... P37182 10331925
    1760 1cg0:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    1761 1cg1:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    1762 1cg2:A (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1763 1cg2:A (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1764 1cg2:B (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1765 1cg2:B (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1766 1cg2:C (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1767 1cg2:C (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1768 1cg2:D (2.5) BS01 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1769 1cg2:D (2.5) BS02 ZN 3.4.17.11 GO:0004180 ... P06621 9083113
    1770 1cg3:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    1771 1cg4:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 10346917
    1772 1cge:A (1.9) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1773 1cge:A (1.9) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1774 1cge:A (1.9) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1775 1cge:A (1.9) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1776 1cge:A (1.9) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1777 1cgf:A (2.1) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1778 1cgf:A (2.1) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1779 1cgf:A (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1780 1cgf:A (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1781 1cgf:A (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1782 1cgf:B (2.1) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1783 1cgf:B (2.1) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8031754
    1784 1cgf:B (2.1) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1785 1cgf:B (2.1) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1786 1cgf:B (2.1) BS05 CA 3.4.24.7 GO:0004222 ... P03956 8031754
    1787 1cgl:A (2.4) BS01 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    1788 1cgl:A (2.4) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    1789 1cgl:A (2.4) BS03 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    1790 1cgl:B (2.4) BS02 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    1791 1cgl:B (2.4) BS03 ZN 3.4.24.7 GO:0004222 ... P03956 8278810
    1792 1cgl:B (2.4) BS04 CA 3.4.24.7 GO:0004222 ... P03956 8278810
    1793 1cgt:A (2.0) BS01 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    1794 1cgt:A (2.0) BS02 CA 2.4.1.19 GO:0003824 ... P30920 1826034
    1795 1cgu:A (2.5) BS03 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    1796 1cgu:A (2.5) BS04 CA 2.4.1.19 GO:0003824 ... P30920 1390660
    1797 1cgv:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1798 1cgv:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1799 1cgw:A (2.5) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7880832
    1800 1cgw:A (2.5) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7880832

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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