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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172001 7zs9:6 (3.1) BS01 ZN ? GO:0000112 ... Q04673 36411341
    172002 7zs9:6 (3.1) BS02 ZN ? GO:0000112 ... Q04673 36411341
    172003 7zs9:6 (3.1) BS03 ZN ? GO:0000112 ... Q04673 36411341
    172004 7zs9:6 (3.1) BS04 ZN ? GO:0000112 ... Q04673 36411341
    172005 7zs9:A (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172006 7zs9:A (3.1) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172007 7zs9:A (3.1) BS03 MG 2.7.7.6 GO:0000428 ... P04050 36411341
    172008 7zs9:B (3.1) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 36411341
    172009 7zs9:C (3.1) BS01 ZN ? GO:0000428 ... P16370 36411341
    172010 7zs9:I (3.1) BS01 ZN ? GO:0000428 ... P27999 36411341
    172011 7zs9:I (3.1) BS02 ZN ? GO:0000428 ... P27999 36411341
    172012 7zs9:J (3.1) BS01 ZN ? GO:0000428 ... P22139 36411341
    172013 7zs9:L (3.1) BS01 ZN ? GO:0000428 ... P40422 36411341
    172014 7zs9:M (3.1) BS02 ZN ? GO:0000993 ... P29055 36411341
    172015 7zs9:W (3.1) BS02 ZN ? GO:0000993 ... P36100 36411341
    172016 7zsa:3 (4.0) BS01 ZN ? GO:0000993 ... Q03290 36411341
    172017 7zsa:3 (4.0) BS02 ZN ? GO:0000993 ... Q03290 36411341
    172018 7zsa:4 (4.0) BS01 ZN ? GO:0000112 ... Q12004 36411341
    172019 7zsa:6 (4.0) BS02 ZN ? GO:0000112 ... Q04673 36411341
    172020 7zsa:6 (4.0) BS03 ZN ? GO:0000112 ... Q04673 36411341
    172021 7zsa:6 (4.0) BS04 ZN ? GO:0000112 ... Q04673 36411341
    172022 7zsa:6 (4.0) BS05 ZN ? GO:0000112 ... Q04673 36411341
    172023 7zsa:A (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172024 7zsa:A (4.0) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172025 7zsa:A (4.0) BS03 MG 2.7.7.6 GO:0000428 ... P04050 36411341
    172026 7zsa:B (4.0) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 36411341
    172027 7zsa:C (4.0) BS01 ZN ? GO:0000428 ... P16370 36411341
    172028 7zsa:I (4.0) BS01 ZN ? GO:0000428 ... P27999 36411341
    172029 7zsa:I (4.0) BS02 ZN ? GO:0000428 ... P27999 36411341
    172030 7zsa:J (4.0) BS01 ZN ? GO:0000428 ... P22139 36411341
    172031 7zsa:L (4.0) BS01 ZN ? GO:0000428 ... P40422 36411341
    172032 7zsa:M (4.0) BS02 ZN ? GO:0000993 ... P29055 36411341
    172033 7zsa:W (4.0) BS03 ZN ? GO:0000993 ... P36100 36411341
    172034 7zsb:3 (6.6) BS01 ZN ? GO:0000993 ... Q03290 36411341
    172035 7zsb:3 (6.6) BS02 ZN ? GO:0000993 ... Q03290 36411341
    172036 7zsb:4 (6.6) BS01 ZN ? GO:0000112 ... Q12004 36411341
    172037 7zsb:6 (6.6) BS01 ZN ? GO:0000112 ... Q04673 36411341
    172038 7zsb:6 (6.6) BS02 ZN ? GO:0000112 ... Q04673 36411341
    172039 7zsb:6 (6.6) BS03 ZN ? GO:0000112 ... Q04673 36411341
    172040 7zsb:6 (6.6) BS04 ZN ? GO:0000112 ... Q04673 36411341
    172041 7zsb:A (6.6) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172042 7zsb:A (6.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 36411341
    172043 7zsb:A (6.6) BS03 MG 2.7.7.6 GO:0000428 ... P04050 36411341
    172044 7zsb:B (6.6) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 36411341
    172045 7zsb:C (6.6) BS01 ZN ? GO:0000428 ... P16370 36411341
    172046 7zsb:I (6.6) BS01 ZN ? GO:0000428 ... P27999 36411341
    172047 7zsb:I (6.6) BS02 ZN ? GO:0000428 ... P27999 36411341
    172048 7zsb:J (6.6) BS01 ZN ? GO:0000428 ... P22139 36411341
    172049 7zsb:L (6.6) BS01 ZN ? GO:0000428 ... P40422 36411341
    172050 7zsb:M (6.6) BS02 ZN ? GO:0000993 ... P29055 36411341
    172051 7zsb:W (6.6) BS02 ZN ? GO:0000993 ... P36100 36411341
    172052 7zse:A (1.4) BS01 MG ? GO:0005737 ... P84308 35779405
    172053 7zsv:B (1.74) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    172054 7zsw:B (1.94) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    172055 7zsx:B (1.77) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    172056 7zta:L041 (2.7) BS02 MG ? GO:0001070 ... P60723 37322159
    172057 7zta:L311 (2.7) BS02 ZN ? GO:0002181 ... P0A7M9 37322159
    172058 7zta:L361 (2.7) BS02 ZN ? GO:0002181 ... P0A7Q6 37322159
    172059 7zta:S021 (2.7) BS02 ZN ? GO:0000028 ... P0A7V0 37322159
    172060 7zti:B (2.09) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    172061 7ztl:A (1.9) BS03 MG 2.7.11.1 GO:0004672 ... O14965 36601802
    172062 7zuw:Ad (4.3) BS02 ZN ? GO:0002181 ... P41057 36801861
    172063 7zuw:Bf (4.3) BS02 ZN ? GO:0002181 ... P87262 36801861
    172064 7zuw:Bi (4.3) BS03 ZN ? GO:0000448 ... P49166 36801861
    172065 7zuw:Bl (4.3) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    172066 7zuw:Bn (4.3) BS02 ZN ? GO:0002181 ... P0CX27 36801861
    172067 7zuw:Bo (4.3) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    172068 7zuw:CC (4.3) BS01 ZN ? GO:0005515 ... P36119 36801861
    172069 7zuw:CC (4.3) BS02 ZN ? GO:0005515 ... P36119 36801861
    172070 7zux:DE (2.5) BS02 MG ? GO:0002181 ... P0CX35 36801861
    172071 7zux:DF (2.5) BS02 MG ? GO:0000028 ... P26783 36801861
    172072 7zux:DX (2.5) BS02 MG ? GO:0000462 ... P0CX29 36801861
    172073 7zux:Dd (2.5) BS02 ZN ? GO:0002181 ... P41057 36801861
    172074 7zux:Df (2.5) BS02 ZN ? GO:0003735 ... P05759 36801861
    172075 7zux:Ef (2.5) BS02 ZN ? GO:0002181 ... P87262 36801861
    172076 7zux:Ei (2.5) BS03 ZN ? GO:0000448 ... P49166 36801861
    172077 7zux:El (2.5) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    172078 7zux:En (2.5) BS03 ZN ? GO:0002181 ... P0CX27 36801861
    172079 7zux:Eo (2.5) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    172080 7zve:E (2.28) BS01 CU 1.1.1.49 GO:0004345 ... P11413 37798264
    172081 7zvj:A (2.61) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0016757 ... O95461 36512577
    172082 7zvj:B (2.61) BS01 MN 2.4.-.-
    2.4.1.-
    2.4.2.-    		 GO:0016757 ... O95461 36512577
    172083 7zvm:A (1.58) BS01 MG ? GO:0016853 ... F0LL70 35955607
    172084 7zvn:A (1.87) BS03 CA ? GO:0001525 ... P07355 36124719
    172085 7zvn:A (1.87) BS04 CA ? GO:0001525 ... P07355 36124719
    172086 7zvn:A (1.87) BS05 CA ? GO:0001525 ... P07355 36124719
    172087 7zvn:A (1.87) BS06 CA ? GO:0001525 ... P07355 36124719
    172088 7zvn:A (1.87) BS07 CA ? GO:0001525 ... P07355 36124719
    172089 7zvn:A (1.87) BS08 CA ? GO:0001525 ... P07355 36124719
    172090 7zvn:A (1.87) BS09 CA ? GO:0001525 ... P07355 36124719
    172091 7zvo:A (1.65) BS03 CA ? N/A Q8A921 36660365
    172092 7zvw:G (3.4) BS02 MG ? GO:0000785 ... C4QXM9 37550452
    172093 7zvx:A (2.4) BS02 CA ? GO:0001525 ... P07355 36124719
    172094 7zvx:A (2.4) BS03 CA ? GO:0001525 ... P07355 36124719
    172095 7zvx:A (2.4) BS04 CA ? GO:0001525 ... P07355 36124719
    172096 7zvx:A (2.4) BS05 CA ? GO:0001525 ... P07355 36124719
    172097 7zvx:B (2.4) BS02 CA ? GO:0001525 ... P07355 36124719
    172098 7zvx:B (2.4) BS03 CA ? GO:0001525 ... P07355 36124719
    172099 7zvx:B (2.4) BS04 CA ? GO:0001525 ... P07355 36124719
    172100 7zvx:B (2.4) BS05 CA ? GO:0001525 ... P07355 36124719
    172101 7zvx:B (2.4) BS06 CA ? GO:0001525 ... P07355 36124719
    172102 7zvx:B (2.4) BS07 CA ? GO:0001525 ... P07355 36124719
    172103 7zvy:A (2.16) BS01 ZN ? N/A Q5JD98 35955607
    172104 7zw0:LE (2.4) BS03 MG ? GO:0002181 ... P0CX45 36113412
    172105 7zw0:LE (2.4) BS04 MG ? GO:0002181 ... P0CX45 36113412
    172106 7zw0:LF (2.4) BS02 MG ? GO:0000027 ... P14126 36113412
    172107 7zw0:Lh (2.4) BS02 MG ? GO:0002181 ... P38061 36113412
    172108 7zw0:Lj (2.4) BS02 ZN ? GO:0002181 ... P87262 36113412
    172109 7zw0:Lj (2.4) BS03 MG ? GO:0002181 ... P87262 36113412
    172110 7zw0:Lm (2.4) BS03 ZN ? GO:0000448 ... P49166 36113412
    172111 7zw0:Lp (2.4) BS02 ZN ? GO:0003735 ... P0CH08 36113412
    172112 7zw0:Lr (2.4) BS03 ZN ? GO:0002181 ... P0CX27 36113412
    172113 7zw0:Ls (2.4) BS02 ZN ? GO:0002181 ... P0CX25 36113412
    172114 7zw0:sB (2.4) BS03 MG ? GO:0000028 ... P26783 36113412
    172115 7zw0:sM (2.4) BS02 ZN ? GO:0002181 ... P41057 36113412
    172116 7zw0:sN (2.4) BS02 ZN ? GO:0003735 ... P05759 36113412
    172117 7zw0:sS (2.4) BS02 MG ? GO:0002181 ... P0CX36 36113412
    172118 7zw0:sc (2.4) BS02 MG ? GO:0000462 ... P0CX29 36113412
    172119 7zw0:sh (2.4) BS03 ZN ? GO:0003676 ... N/A 36113412
    172120 7zw0:sh (2.4) BS04 ZN ? GO:0003676 ... N/A 36113412
    172121 7zw0:sh (2.4) BS05 ZN ? GO:0003676 ... N/A 36113412
    172122 7zw0:sh (2.4) BS06 ZN ? GO:0003676 ... N/A 36113412
    172123 7zw0:sh (2.4) BS07 ZN ? GO:0003676 ... N/A 36113412
    172124 7zw0:sh (2.4) BS08 ZN ? GO:0003676 ... N/A 36113412
    172125 7zw0:sh (2.4) BS09 ZN ? GO:0003676 ... N/A 36113412
    172126 7zw0:sh (2.4) BS10 ZN ? GO:0003676 ... N/A 36113412
    172127 7zw0:sh (2.4) BS11 ZN ? GO:0003676 ... N/A 36113412
    172128 7zw0:sh (2.4) BS12 ZN ? GO:0003676 ... N/A 36113412
    172129 7zw0:sh (2.4) BS13 ZN ? GO:0003676 ... N/A 36113412
    172130 7zw0:sh (2.4) BS14 ZN ? GO:0003676 ... N/A 36113412
    172131 7zw0:sh (2.4) BS15 ZN ? GO:0003676 ... N/A 36113412
    172132 7zw0:sh (2.4) BS16 ZN ? GO:0003676 ... N/A 36113412
    172133 7zw0:sh (2.4) BS17 ZN ? GO:0003676 ... N/A 36113412
    172134 7zw0:sh (2.4) BS18 ZN ? GO:0003676 ... N/A 36113412
    172135 7zw0:sh (2.4) BS19 ZN ? GO:0003676 ... N/A 36113412
    172136 7zw0:sh (2.4) BS20 ZN ? GO:0003676 ... N/A 36113412
    172137 7zw0:sh (2.4) BS21 ZN ? GO:0003676 ... N/A 36113412
    172138 7zw0:sh (2.4) BS22 ZN ? GO:0003676 ... N/A 36113412
    172139 7zw0:sh (2.4) BS23 ZN ? GO:0003676 ... N/A 36113412
    172140 7zw0:sh (2.4) BS24 ZN ? GO:0003676 ... N/A 36113412
    172141 7zw0:sh (2.4) BS25 ZN ? GO:0003676 ... N/A 36113412
    172142 7zw0:sh (2.4) BS26 ZN ? GO:0003676 ... N/A 36113412
    172143 7zw0:sh (2.4) BS27 ZN ? GO:0003676 ... N/A 36113412
    172144 7zw0:sh (2.4) BS28 ZN ? GO:0003676 ... N/A 36113412
    172145 7zw0:sh (2.4) BS29 ZN ? GO:0003676 ... N/A 36113412
    172146 7zw7:A (2.85) BS01 ZN 3.5.1.98 GO:0000122 ... A0A3Q0KJ63 N/A
    172147 7zw9:A (2.1) BS01 ZN ? GO:0046872 ... Q63SQ4 36016712
    172148 7zwb:AAA (1.48) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 37436184
    172149 7zwc:b (3.2) BS03 ZN ? GO:0000978 ... Q92966 36424526
    172150 7zwc:b (3.2) BS04 ZN ? GO:0000978 ... Q92966 36424526
    172151 7zwd:A (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172152 7zwd:A (3.0) BS02 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172153 7zwd:A (3.0) BS03 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172154 7zwd:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 36424526
    172155 7zwd:C (3.0) BS01 ZN ? GO:0000428 ... I3LCH3 36424526
    172156 7zwd:I (3.0) BS01 ZN ? GO:0000428 ... P60899 36424526
    172157 7zwd:I (3.0) BS02 ZN ? GO:0000428 ... P60899 36424526
    172158 7zwd:J (3.0) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 36424526
    172159 7zwd:L (3.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 36424526
    172160 7zwd:M (3.0) BS02 ZN 2.3.1.48 GO:0000776 ... Q00403 36424526
    172161 7zwd:b (3.0) BS03 ZN ? GO:0000978 ... Q92966 36424526
    172162 7zwd:b (3.0) BS04 ZN ? GO:0000978 ... Q92966 36424526
    172163 7zwh:D (3.2) BS01 CA ? N/A P04275 36179246
    172164 7zwh:D (3.2) BS02 CA ? N/A P04275 36179246
    172165 7zwh:D (3.2) BS03 CA ? N/A P04275 36179246
    172166 7zwh:E (3.2) BS01 CA ? N/A P04275 36179246
    172167 7zwh:E (3.2) BS02 CA ? N/A P04275 36179246
    172168 7zwh:E (3.2) BS03 CA ? N/A P04275 36179246
    172169 7zx0:BBB (2.99) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172170 7zx0:CCC (2.99) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172171 7zx0:DDD (2.99) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172172 7zx0:EEE (2.99) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172173 7zx0:FFF (2.99) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172174 7zx1:BBB (2.829) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172175 7zx1:CCC (2.829) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172176 7zx1:DDD (2.829) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172177 7zx1:EEE (2.829) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172178 7zx1:FFF (2.829) BS03 MG 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 36200480
    172179 7zx2:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    172180 7zx2:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 36462501
    172181 7zx5:X (1.544) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 N/A
    172182 7zx6:X (1.447) BS04 FE2 1.2.7.4 GO:0003824 ... Q9F8A8 N/A
    172183 7zx7:A (3.4) BS01 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172184 7zx7:A (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172185 7zx7:A (3.4) BS03 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172186 7zx7:B (3.4) BS02 ZN 2.7.7.6 GO:0000428 ... I3LGP4 36424526
    172187 7zx7:C (3.4) BS01 ZN ? GO:0000428 ... I3LCH3 36424526
    172188 7zx7:I (3.4) BS01 ZN ? GO:0000428 ... P60899 36424526
    172189 7zx7:I (3.4) BS02 ZN ? GO:0000428 ... P60899 36424526
    172190 7zx7:J (3.4) BS01 ZN ? GO:0000428 ... A0A4X1VYD0 36424526
    172191 7zx7:L (3.4) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 36424526
    172192 7zx7:M (3.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 36424526
    172193 7zx7:b (3.4) BS03 ZN ? GO:0000978 ... Q92966 36424526
    172194 7zx7:b (3.4) BS04 ZN ? GO:0000978 ... Q92966 36424526
    172195 7zx8:A (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172196 7zx8:A (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172197 7zx8:A (3.0) BS05 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 36424526
    172198 7zx8:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... I3LGP4 36424526
    172199 7zx8:C (3.0) BS01 ZN ? GO:0000428 ... I3LCH3 36424526
    172200 7zx8:I (3.0) BS01 ZN ? GO:0000428 ... P60899 36424526
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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