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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171801 7zjw:Lm (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 35709277
    171802 7zjw:Lp (2.8) BS02 ZN ? GO:0003723 ... A0A8C8Y9V5 35709277
    171803 7zjw:Lq (2.8) BS02 ZN ? GO:0003735 ... A0A7J7V6K8 35709277
    171804 7zjw:Lr (2.8) BS02 ZN ? GO:0003735 ... A0A6I9ZMF9 35709277
    171805 7zjw:SD (2.8) BS03 ZN ? GO:0003735 ... A0A8C0T835 35709277
    171806 7zjw:SF (2.8) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    171807 7zjw:SF (2.8) BS03 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    171808 7zjw:SH (2.8) BS02 ZN ? GO:0003735 ... G1U7M4 35709277
    171809 7zjx:Lj (3.1) BS02 ZN ? GO:0003735 ... G1TXG5 35709277
    171810 7zjx:Lm (3.1) BS03 ZN ? GO:0003723 ... U3KPD5 35709277
    171811 7zjx:Lp (3.1) BS02 ZN ? GO:0003723 ... A0A8C8Y9V5 35709277
    171812 7zjx:Lq (3.1) BS02 ZN ? GO:0003735 ... A0A7J7V6K8 35709277
    171813 7zjx:Lr (3.1) BS02 ZN ? GO:0003735 ... A0A6I9ZMF9 35709277
    171814 7zjx:SD (3.1) BS03 ZN ? GO:0003735 ... A0A8C0T835 35709277
    171815 7zjx:SF (3.1) BS02 ZN ? GO:0002181 ... A0A2K5LQY6 35709277
    171816 7zjx:SH (3.1) BS02 ZN ? GO:0003735 ... G1U7M4 35709277
    171817 7zk3:A (2.85) BS01 CA ? GO:0005229 ... Q8BHY3 35589730
    171818 7zk3:A (2.85) BS02 CA ? GO:0005229 ... Q8BHY3 35589730
    171819 7zk3:A (2.85) BS04 CA ? GO:0005229 ... Q8BHY3 35589730
    171820 7zk3:B (2.85) BS01 CA ? GO:0005229 ... Q8BHY3 35589730
    171821 7zk3:B (2.85) BS02 CA ? GO:0005229 ... Q8BHY3 35589730
    171822 7zk3:B (2.85) BS04 CA ? GO:0005229 ... Q8BHY3 35589730
    171823 7zk4:A (2.6) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171824 7zk4:A (2.6) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171825 7zk5:A (2.6) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171826 7zk5:A (2.6) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171827 7zk6:A (3.1) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171828 7zk6:A (3.1) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171829 7zk8:A (3.0) BS02 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171830 7zk8:A (3.0) BS04 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171831 7zka:A (2.9) BS03 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171832 7zka:A (2.9) BS05 MG 7.6.2.1
    7.6.2.2    		 GO:0001666 ... P21447 38259172
    171833 7zkc:A (1.769) BS01 CA ? GO:0003980 ... G0SB58 37822503
    171834 7zki:7 (3.6) BS04 MG ? GO:0003743 ... Q9UZK7 35694843
    171835 7zl5:AAA (1.479) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 N/A
    171836 7zl5:BBB (1.479) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 N/A
    171837 7zl6:AAA (1.383) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    171838 7zle:A (1.823) BS02 CA ? GO:0003980 ... G0SB58 N/A
    171839 7zlu:A (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    171840 7zlu:B (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    171841 7zlu:C (2.049) BS02 CA ? GO:0003980 ... G0SB58 37822503
    171842 7zm7:M (2.77) BS01 ZN ? N/A G0S6J1 36427319
    171843 7zmb:M (2.75) BS01 ZN ? N/A G0S6J1 36427319
    171844 7zmf:A (2.21) BS01 MG ? N/A C0ZGQ6 36129979
    171845 7zmf:B (2.21) BS01 MG ? N/A C0ZGQ6 36129979
    171846 7zmg:M (2.44) BS01 ZN ? N/A G0S6J1 36427319
    171847 7zmk:A (3.4) BS01 CA ? N/A P55083 N/A
    171848 7zmk:D (3.4) BS01 CA ? N/A P55083 N/A
    171849 7zmk:I (3.4) BS01 CA ? N/A P55083 N/A
    171850 7zmk:L (3.4) BS01 CA ? N/A P55083 N/A
    171851 7zmk:O (3.4) BS01 CA ? N/A P55083 N/A
    171852 7zmk:R (3.4) BS01 CA ? N/A P55083 N/A
    171853 7zmk:U (3.4) BS01 CA ? N/A P55083 N/A
    171854 7zmk:X (3.4) BS01 CA ? N/A P55083 N/A
    171855 7zml:A (2.79) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171856 7zml:B (2.79) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171857 7zml:C (2.79) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171858 7zml:D (2.79) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171859 7zmm:A (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171860 7zmm:B (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171861 7zmm:C (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171862 7zmm:D (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171863 7zmn:A (3.2) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171864 7zmn:B (3.2) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171865 7zmo:A (3.75) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171866 7zmo:B (3.75) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171867 7zmp:A (3.626) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171868 7zmp:B (3.626) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171869 7zmq:A (2.7) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171870 7zmq:B (2.7) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171871 7zmr:A (3.3) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171872 7zmr:B (3.3) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171873 7zms:A (2.7) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171874 7zmt:A (2.3) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171875 7zmt:B (2.3) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171876 7zmv:A (2.002) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171877 7zmv:B (2.002) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171878 7zmv:C (2.002) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171879 7zmv:D (2.002) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    171880 7zmw:A (1.8) BS02 MG ? GO:0000122 ... P31947 36425501
    171881 7zmx:A (1.2) BS01 ZN ? N/A Q9NXR8 37148949
    171882 7zmx:A (1.2) BS02 ZN ? N/A Q9NXR8 37148949
    171883 7zmx:B (1.2) BS01 ZN ? N/A Q9NXR8 37148949
    171884 7zmx:B (1.2) BS02 ZN ? N/A Q9NXR8 37148949
    171885 7zn6:A (1.9) BS02 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    171886 7zn6:A (1.9) BS03 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    171887 7zn6:A (1.9) BS04 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    171888 7zn6:A (1.9) BS05 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    171889 7zn7:B (3.78) BS01 ZN ? N/A K7Y9Z1 36762436
    171890 7znf:A (-1.00) BS01 ZN ? GO:0003677 ... P08048 1849423
    171891 7znm:A (2.01) BS02 MG N/A GO:0004601 ... N/A 36374006
    171892 7znm:B (2.01) BS02 MG N/A GO:0004601 ... N/A 36374006
    171893 7znn:B (4.8) BS01 ZN ? N/A K7Y9Z1 36762436
    171894 7znp:A (2.15) BS01 MG N/A GO:0004645 ... N/A N/A
    171895 7znq:D (3.04) BS01 MG ? N/A P19843 35896743
    171896 7znq:D (3.04) BS02 CU ? N/A P19843 35896743
    171897 7znq:L (3.04) BS01 ZN ? N/A Q52529 35896743
    171898 7znv:A (1.21) BS02 MG N/A GO:0004601 ... N/A 36374006
    171899 7znw:A (2.09) BS02 MG N/A GO:0004601 ... N/A 36374006
    171900 7znw:C (2.09) BS02 MG N/A GO:0004601 ... N/A 36374006
    171901 7zo2:A (1.49) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171902 7zo2:A (1.49) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171903 7zo3:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171904 7zo3:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171905 7zo4:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171906 7zo4:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171907 7zo5:A (1.43) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171908 7zo5:A (1.43) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171909 7zo6:A (1.61) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171910 7zo6:A (1.61) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171911 7zo7:A (1.63) BS01 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171912 7zo7:A (1.63) BS02 ZN 3.5.2.6 GO:0008270 ... P52700 36924941
    171913 7zob:A (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171914 7zob:B (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171915 7zob:C (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171916 7zob:D (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171917 7zob:E (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171918 7zob:F (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171919 7zob:G (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171920 7zob:H (1.2) BS01 ZN N/A GO:0003824 ... N/A 36735785
    171921 7zoc:A (1.91) BS01 ZN 3.4.24.3 GO:0004222 ... Q46085 N/A
    171922 7zoc:A (1.91) BS02 CA 3.4.24.3 GO:0004222 ... Q46085 N/A
    171923 7zoe:A (1.5) BS02 FE 1.21.3.1 GO:0005506 ... P05326 N/A
    171924 7zok:A (-1.00) BS01 ZN ? N/A Q1D2V2 38809974
    171925 7zol:B (3.03) BS02 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171926 7zol:B (3.03) BS03 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171927 7zol:B (3.03) BS04 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171928 7zoq:B (3.2) BS02 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171929 7zoq:B (3.2) BS03 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171930 7zoq:B (3.2) BS04 ZN ? GO:0051607 ... A0A975GRY4 36471056
    171931 7zp9:D (2.82) BS02 MG ? GO:0005524 ... O87952 N/A
    171932 7zpf:A (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    171933 7zpf:B (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    171934 7zpf:C (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    171935 7zpf:D (2.54) BS01 ZN ? GO:0046872 ... Q2VL32 37973928
    171936 7zpl:B (3.12) BS02 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    171937 7zpq:Ad (3.47) BS02 ZN ? GO:0002181 ... P41057 36801861
    171938 7zpq:Af (3.47) BS02 ZN ? GO:0003735 ... P05759 36801861
    171939 7zpq:Bf (3.47) BS02 ZN ? GO:0002181 ... P87262 36801861
    171940 7zpq:Bi (3.47) BS03 ZN ? GO:0000448 ... P49166 36801861
    171941 7zpq:Bl (3.47) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    171942 7zpq:Bn (3.47) BS02 ZN ? GO:0002181 ... P0CX27 36801861
    171943 7zpq:Bo (3.47) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    171944 7zpq:CC (3.47) BS01 ZN ? GO:0005515 ... P36119 36801861
    171945 7zpq:CC (3.47) BS02 ZN ? GO:0005515 ... P36119 36801861
    171946 7zpr:D (3.56) BS02 MG ? GO:0005524 ... O87952 N/A
    171947 7zqe:M (2.55) BS01 CU ? GO:0005507 ... P18068 36229605
    171948 7zqq:A (1.75) BS02 MG ? GO:0005737 ... P84308 35779405
    171949 7zqy:A (2.51) BS01 ZN 3.6.-.- N/A G0SHW7 36577401
    171950 7zqy:B (2.51) BS01 ZN 3.6.-.- N/A G0SHW7 36577401
    171951 7zqy:C (2.51) BS01 ZN 3.6.-.- N/A G0SHW7 36577401
    171952 7zqy:D (2.51) BS01 ZN 3.6.-.- N/A G0SHW7 36577401
    171953 7zr1:A (4.0) BS01 MN 3.1.-.- GO:0000014 ... G0RYR3 36577401
    171954 7zr1:A (4.0) BS02 MN 3.1.-.- GO:0000014 ... G0RYR3 36577401
    171955 7zr1:B (4.0) BS01 MN 3.1.-.- GO:0000014 ... G0RYR3 36577401
    171956 7zr1:B (4.0) BS02 MN 3.1.-.- GO:0000014 ... G0RYR3 36577401
    171957 7zr1:C (4.0) BS01 MG 3.6.-.- GO:0000722 ... G0SHW7 36577401
    171958 7zr1:D (4.0) BS02 MG 3.6.-.- GO:0000722 ... G0SHW7 36577401
    171959 7zr4:A (1.701) BS01 MG ? GO:0005737 ... P84308 35779405
    171960 7zrn:A (1.82) BS02 MG 4.2.3.175 GO:0016829 ... A9GK58 36249875
    171961 7zrn:A (1.82) BS03 MG 4.2.3.175 GO:0016829 ... A9GK58 36249875
    171962 7zrn:B (1.82) BS02 MG 4.2.3.175 GO:0016829 ... A9GK58 36249875
    171963 7zrn:B (1.82) BS03 MG 4.2.3.175 GO:0016829 ... A9GK58 36249875
    171964 7zrp:A (2.65) BS02 CA ? GO:0000086 ... P0DP23 36496072
    171965 7zrp:A (2.65) BS03 CA ? GO:0000086 ... P0DP23 36496072
    171966 7zrp:A (2.65) BS04 CA ? GO:0000086 ... P0DP23 36496072
    171967 7zrp:A (2.65) BS05 CA ? GO:0000086 ... P0DP23 36496072
    171968 7zrp:A (2.65) BS06 ZN ? GO:0000086 ... P0DP23 36496072
    171969 7zrp:C (2.65) BS02 CA ? GO:0000086 ... P0DP23 36496072
    171970 7zrp:C (2.65) BS03 CA ? GO:0000086 ... P0DP23 36496072
    171971 7zrp:C (2.65) BS04 CA ? GO:0000086 ... P0DP23 36496072
    171972 7zrp:C (2.65) BS05 CA ? GO:0000086 ... P0DP23 36496072
    171973 7zrp:C (2.65) BS06 ZN ? GO:0000086 ... P0DP23 36496072
    171974 7zrp:C (2.65) BS07 ZN ? GO:0000086 ... P0DP23 36496072
    171975 7zrq:A (1.68) BS02 CA ? GO:0000086 ... P0DP23 36496072
    171976 7zrq:A (1.68) BS03 CA ? GO:0000086 ... P0DP23 36496072
    171977 7zrq:A (1.68) BS04 CA ? GO:0000086 ... P0DP23 36496072
    171978 7zrq:A (1.68) BS05 CA ? GO:0000086 ... P0DP23 36496072
    171979 7zrs:AF (4.8) BS02 MG ? GO:0000028 ... P26783 36801861
    171980 7zrs:Ad (4.8) BS02 ZN ? GO:0002181 ... P41057 36801861
    171981 7zrs:Af (4.8) BS02 ZN ? GO:0003735 ... P05759 36801861
    171982 7zrs:Bf (4.8) BS02 ZN ? GO:0002181 ... P87262 36801861
    171983 7zrs:Bi (4.8) BS03 ZN ? GO:0000448 ... P49166 36801861
    171984 7zrs:Bl (4.8) BS02 ZN ? GO:0003735 ... P0CH08 36801861
    171985 7zrs:Bn (4.8) BS03 ZN ? GO:0002181 ... P0CX27 36801861
    171986 7zrs:Bo (4.8) BS02 ZN ? GO:0002181 ... P0CX25 36801861
    171987 7zrs:CC (4.8) BS01 ZN ? GO:0005515 ... P36119 36801861
    171988 7zrs:CC (4.8) BS02 ZN ? GO:0005515 ... P36119 36801861
    171989 7zrx:B (2.04) BS02 ZN ? GO:0046872 ... G1UBD5 37100286
    171990 7zs0:A (1.75) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    171991 7zs0:A (1.75) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    171992 7zs1:A (1.7) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    171993 7zs1:A (1.7) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    171994 7zs2:A (1.12) BS01 CA ? GO:0009055 ... Q1PZE6 N/A
    171995 7zs2:A (1.12) BS02 CA ? GO:0009055 ... Q1PZE6 N/A
    171996 7zs8:A (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    171997 7zs8:B (1.4) BS03 CA 1.11.1.5 GO:0009055 ... A0A1D3HIT0 37047219
    171998 7zs9:3 (3.1) BS01 ZN ? GO:0000993 ... Q03290 36411341
    171999 7zs9:3 (3.1) BS02 ZN ? GO:0000993 ... Q03290 36411341
    172000 7zs9:4 (3.1) BS01 ZN ? GO:0000112 ... Q12004 36411341
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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