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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171001 7yvq:C (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171002 7yvq:C (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171003 7yvq:D (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171004 7yvq:D (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171005 7yvq:D (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171006 7yvq:E (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171007 7yvq:E (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171008 7yvq:E (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171009 7yvq:F (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171010 7yvq:F (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171011 7yvq:F (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171012 7yvq:G (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171013 7yvq:G (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171014 7yvq:G (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171015 7yvs:A (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171016 7yvs:A (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171017 7yvs:A (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171018 7yvs:B (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171019 7yvs:B (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171020 7yvs:B (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171021 7yvs:C (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171022 7yvs:C (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171023 7yvs:C (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171024 7yvs:D (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171025 7yvs:D (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171026 7yvs:D (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171027 7yvs:E (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171028 7yvs:E (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171029 7yvs:E (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171030 7yvs:F (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171031 7yvs:F (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171032 7yvs:F (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171033 7yvs:G (2.8) BS01 CA ? GO:0005576 ... A8DS70 36253419
    171034 7yvs:G (2.8) BS02 CA ? GO:0005576 ... A8DS70 36253419
    171035 7yvs:G (2.8) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171036 7yvu:A (3.2) BS01 ZN 3.4.17.-
    3.4.17.23    		 GO:0006508 ... Q8R0I0 37479708
    171037 7yvv:A (2.1) BS01 FE 1.13.11.27 GO:0003868 ... A0A7H8HIR4 N/A
    171038 7ywt:AAA (1.106) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 35635137
    171039 7ywv:B (2.4) BS03 CA 1.1.3.38 GO:0000166 ... Q0SBK1 36418310
    171040 7yx8:A (1.5) BS04 ZN ? GO:0046872 ... B2UPI7 35882872
    171041 7yx8:B (1.5) BS04 ZN ? GO:0046872 ... B2UPI7 35882872
    171042 7yxg:A (1.641) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171043 7yxg:B (1.641) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171044 7yxh:A (2.3) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171045 7yxh:A (2.3) BS02 MG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171046 7yxh:B (2.3) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171047 7yxi:A (2.1) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171048 7yxi:B (2.1) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171049 7yxj:A (2.45) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171050 7yxj:B (2.45) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171051 7yxj:C (2.45) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171052 7yxj:D (2.45) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171053 7yxk:A (2.43) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171054 7yxk:B (2.43) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171055 7yxl:A (2.2) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171056 7yxl:B (2.2) BS01 MN 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171057 7yxl:B (2.2) BS02 MG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    171058 7yxm:A (1.7) BS01 ZN ? GO:0046872 ... Q39VG2 35313080
    171059 7yxm:B (1.7) BS01 MG ? GO:0016746 ... Q39VG1 35313080
    171060 7yxm:C (1.7) BS01 ZN ? GO:0046872 ... Q39VG2 35313080
    171061 7yxu:L (2.31) BS02 MN N/A N/A N/A 36343381
    171062 7yy3:A (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    171063 7yy3:B (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    171064 7yy3:C (1.535) BS02 MG 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    171065 7yyq:A (1.7) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171066 7yyv:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171067 7yyw:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171068 7yyx:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171069 7yyy:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171070 7yyz:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171071 7yz0:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171072 7yz1:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171073 7yz3:A (1.8) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171074 7yz5:A (2.11) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171075 7yz6:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 36807348
    171076 7yz9:A (1.97) BS01 MN 4.6.1.1 GO:0009190 ... P9WQ35 35980026
    171077 7yz9:A (1.97) BS02 MN 4.6.1.1 GO:0009190 ... P9WQ35 35980026
    171078 7yzh:AAA (1.79) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    171079 7yzh:BBB (1.79) BS01 ZN 4.2.1.1 GO:0004089 ... A0A3Q0KSG2 35635137
    171080 7yzi:A (3.83) BS02 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171081 7yzi:A (3.83) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171082 7yzi:B (3.83) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171083 7yzi:B (3.83) BS04 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171084 7yzk:A (3.57) BS02 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171085 7yzk:A (3.57) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171086 7yzk:B (3.57) BS03 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171087 7yzk:B (3.57) BS04 MN 4.6.1.1 GO:0000287 ... P9WQ35 35980026
    171088 7yzn:A (1.7) BS01 MG ? GO:0003743 ... Q9UZK7 35694843
    171089 7yzo:A (3.4) BS03 MN ? GO:0000014 ... P0AG76 35987200
    171090 7yzo:A (3.4) BS04 MN ? GO:0000014 ... P0AG76 35987200
    171091 7yzo:B (3.4) BS01 MN ? GO:0000014 ... P0AG76 35987200
    171092 7yzo:B (3.4) BS02 MN ? GO:0000014 ... P0AG76 35987200
    171093 7yzo:C (3.4) BS04 MG ? GO:0000014 ... P13458 35987200
    171094 7yzo:D (3.4) BS05 MG ? GO:0000014 ... P13458 35987200
    171095 7yzp:A (4.0) BS02 MN ? GO:0000014 ... P0AG76 35987200
    171096 7yzp:A (4.0) BS03 MN ? GO:0000014 ... P0AG76 35987200
    171097 7yzp:B (4.0) BS01 MN ? GO:0000014 ... P0AG76 35987200
    171098 7yzp:B (4.0) BS02 MN ? GO:0000014 ... P0AG76 35987200
    171099 7yzp:C (4.0) BS03 MG ? GO:0000014 ... P13458 35987200
    171100 7yzr:A (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    171101 7yzr:C (6.92) BS01 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    171102 7yzx:A (1.9) BS02 CA 3.4.21.110 GO:0004252 ... P15926 36478677
    171103 7yzz:A (1.29) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    171104 7yzz:A (1.29) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    171105 7yzz:A (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    171106 7yzz:A (1.29) BS06 MG ? GO:0004035 ... Q93P54 36194497
    171107 7yzz:B (1.29) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    171108 7yzz:B (1.29) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    171109 7yzz:B (1.29) BS03 MG ? GO:0004035 ... Q93P54 36194497
    171110 7yzz:B (1.29) BS05 MG ? GO:0004035 ... Q93P54 36194497
    171111 7z00:B (2.6) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    171112 7z00:B (2.6) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    171113 7z00:B (2.6) BS03 MG ? GO:0004035 ... Q93P54 36194497
    171114 7z01:A (1.82) BS02 CA 3.6.5.- GO:0000226 ... P81947 35290733
    171115 7z02:A (2.36) BS02 MG 3.6.5.- GO:0000226 ... P81947 35290733
    171116 7z03:A (3.7) BS03 MN ? GO:0000014 ... P0AG76 35987200
    171117 7z03:A (3.7) BS04 MN ? GO:0000014 ... P0AG76 35987200
    171118 7z03:B (3.7) BS01 MN ? GO:0000014 ... P0AG76 35987200
    171119 7z03:B (3.7) BS02 MN ? GO:0000014 ... P0AG76 35987200
    171120 7z03:C (3.7) BS03 MG ? GO:0000014 ... P13458 35987200
    171121 7z03:D (3.7) BS05 MG ? GO:0000014 ... P13458 35987200
    171122 7z04:A (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    171123 7z04:C (7.5) BS02 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    171124 7z0h:A (2.6) BS01 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    171125 7z0h:A (2.6) BS02 ZN 2.7.7.6 GO:0000428 ... P04051 36977686
    171126 7z0h:A (2.6) BS03 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    171127 7z0h:A (2.6) BS04 MG 2.7.7.6 GO:0000428 ... P04051 36977686
    171128 7z0h:I (2.6) BS01 MG ? GO:0000428 ... Q04307 36977686
    171129 7z0h:I (2.6) BS02 ZN ? GO:0000428 ... Q04307 36977686
    171130 7z0h:J (2.6) BS01 ZN ? GO:0000428 ... P22139 36977686
    171131 7z0h:L (2.6) BS01 ZN ? GO:0003677 ... P40422 36977686
    171132 7z0n:AAA (2.4) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 35440138
    171133 7z0n:AAA (2.4) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 35440138
    171134 7z0n:AAA (2.4) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 35440138
    171135 7z0r:A (1.66) BS01 ZN ? GO:0003700 ... Q9C5T4 35660042
    171136 7z0r:B (1.66) BS01 ZN ? GO:0003700 ... Q9C5T4 35660042
    171137 7z0s:F (2.6) BS03 FE ? GO:0003954 ... P16432 36104349
    171138 7z0t:F (3.4) BS03 FE ? GO:0003954 ... P16432 36104349
    171139 7z0u:A (2.85) BS03 ZN ? GO:0003700 ... Q9C5T4 35660042
    171140 7z0v:A (1.45) BS01 CO 4.2.1.84 GO:0003824 ... Q84FS5 36106339
    171141 7z10:a (3.87) BS01 CU 7.1.1.9 GO:0004129 ... P00401 35839926
    171142 7z10:d (3.87) BS01 ZN ? GO:0005740 ... P04037 35839926
    171143 7z13:2 (3.4) BS03 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    171144 7z13:4 (3.4) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 35705812
    171145 7z13:5 (3.4) BS04 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    171146 7z13:6 (3.4) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35705812
    171147 7z13:7 (3.4) BS02 ZN N/A GO:0003677 ... N/A 35705812
    171148 7z13:N (3.4) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    171149 7z13:N (3.4) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    171150 7z13:Q (3.4) BS01 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    171151 7z13:Q (3.4) BS02 ZN 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 35705812
    171152 7z13:a (3.4) BS03 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    171153 7z13:c (3.4) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 35705812
    171154 7z13:d (3.4) BS04 ZN 3.6.4.12 GO:0003677 ... N/A 35705812
    171155 7z13:e (3.4) BS04 ZN 3.6.4.12 GO:0000727 ... P53091 35705812
    171156 7z13:f (3.4) BS02 ZN N/A GO:0003677 ... N/A 35705812
    171157 7z15:C (1.93) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171158 7z15:D (1.93) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171159 7z15:G (1.93) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171160 7z15:H (1.93) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171161 7z15:I (1.93) BS02 MG ? GO:0000166 ... P16678 36813778
    171162 7z15:J (1.93) BS03 MG ? GO:0000166 ... P16678 36813778
    171163 7z16:C (2.09) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171164 7z16:D (2.09) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171165 7z16:G (2.09) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171166 7z16:H (2.09) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171167 7z17:C (2.57) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171168 7z17:D (2.57) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171169 7z17:G (2.57) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171170 7z17:H (2.57) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171171 7z18:C (1.98) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171172 7z18:D (1.98) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171173 7z18:G (1.98) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171174 7z18:H (1.98) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171175 7z18:I (1.98) BS02 MG ? GO:0000166 ... P16678 36813778
    171176 7z18:J (1.98) BS03 MG ? GO:0000166 ... P16678 36813778
    171177 7z19:C (2.57) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171178 7z19:D (2.57) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171179 7z19:G (2.57) BS01 ZN 2.7.8.37 GO:0005515 ... P16687 36813778
    171180 7z19:H (2.57) BS01 ZN 4.7.1.1 GO:0005515 ... P16688 36813778
    171181 7z1i:A (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    171182 7z1i:B (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    171183 7z1i:D (3.09) BS01 CA 3.2.1.147
    3.2.1.21    		 GO:0004553 ... P37702 N/A
    171184 7z1l:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    171185 7z1l:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    171186 7z1l:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36070694
    171187 7z1l:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P22276 36070694
    171188 7z1l:I (2.8) BS01 ZN ? GO:0000428 ... Q04307 36070694
    171189 7z1l:I (2.8) BS02 ZN ? GO:0000428 ... Q04307 36070694
    171190 7z1l:J (2.8) BS01 ZN ? GO:0000428 ... P22139 36070694
    171191 7z1l:L (2.8) BS01 ZN ? GO:0000428 ... P40422 36070694
    171192 7z1m:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    171193 7z1m:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    171194 7z1m:A (3.4) BS06 MG 2.7.7.6 GO:0000428 ... P04051 36070694
    171195 7z1m:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P22276 36070694
    171196 7z1m:I (3.4) BS01 ZN ? GO:0000428 ... Q04307 36070694
    171197 7z1m:J (3.4) BS01 ZN ? GO:0000428 ... P22139 36070694
    171198 7z1m:L (3.4) BS01 ZN ? GO:0000428 ... P40422 36070694
    171199 7z1n:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    171200 7z1n:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... P04051 36070694
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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