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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    170801 7ynh:B (1.94) BS02 CU 1.4.3.21 GO:0005507 ... P46881 36458614
    170802 7ynx:A (2.3) BS01 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170803 7ynx:A (2.3) BS02 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170804 7ynx:A (2.3) BS03 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170805 7ynx:A (2.3) BS04 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170806 7ynx:A (2.3) BS05 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170807 7ynx:A (2.3) BS06 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170808 7ynx:A (2.3) BS07 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170809 7ynx:A (2.3) BS08 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170810 7ynx:B (2.3) BS01 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170811 7ynx:B (2.3) BS02 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170812 7ynx:B (2.3) BS03 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170813 7ynx:B (2.3) BS04 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170814 7ynx:B (2.3) BS05 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170815 7ynx:B (2.3) BS06 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170816 7ynx:B (2.3) BS07 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170817 7ynx:B (2.3) BS08 ZN 2.3.2.27 GO:0008270 ... Q96PM5 37120596
    170818 7ynz:A (3.5) BS01 MG ? GO:0005216 ... Q12791 N/A
    170819 7ynz:A (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    170820 7ynz:A (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    170821 7ynz:C (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    170822 7ynz:C (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    170823 7ynz:C (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    170824 7ynz:E (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    170825 7ynz:E (3.5) BS02 CA ? GO:0005216 ... Q12791 N/A
    170826 7ynz:G (3.5) BS01 CA ? GO:0005216 ... Q12791 N/A
    170827 7ynz:G (3.5) BS02 MG ? GO:0005216 ... Q12791 N/A
    170828 7ynz:G (3.5) BS03 CA ? GO:0005216 ... Q12791 N/A
    170829 7yo0:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170830 7yo0:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170831 7yo0:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170832 7yo0:C (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170833 7yo0:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170834 7yo0:E (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170835 7yo0:G (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170836 7yo0:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170837 7yo1:A (3.6) BS01 MG ? GO:0005216 ... Q12791 N/A
    170838 7yo1:A (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170839 7yo1:A (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170840 7yo1:C (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    170841 7yo1:C (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170842 7yo1:E (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    170843 7yo1:E (3.6) BS02 CA ? GO:0005216 ... Q12791 N/A
    170844 7yo1:G (3.6) BS01 CA ? GO:0005216 ... Q12791 N/A
    170845 7yo1:G (3.6) BS02 MG ? GO:0005216 ... Q12791 N/A
    170846 7yo1:G (3.6) BS03 CA ? GO:0005216 ... Q12791 N/A
    170847 7yo3:A (3.1) BS01 MG ? GO:0005216 ... Q12791 N/A
    170848 7yo3:A (3.1) BS02 CA ? GO:0005216 ... Q12791 N/A
    170849 7yo3:A (3.1) BS03 CA ? GO:0005216 ... Q12791 N/A
    170850 7yo5:A (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    170851 7yo5:A (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    170852 7yo5:B (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    170853 7yo5:B (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    170854 7yo5:C (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    170855 7yo5:C (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    170856 7yo5:D (3.9) BS01 CA ? GO:0005216 ... Q12791 N/A
    170857 7yo5:D (3.9) BS02 CA ? GO:0005216 ... Q12791 N/A
    170858 7yos:A (2.17) BS01 MN ? GO:0003676 ... Q58241 N/A
    170859 7yos:B (2.17) BS01 MN ? GO:0003676 ... Q58241 N/A
    170860 7yp8:A (2.1) BS02 ZN 6.1.1.4 GO:0000166 ... B4RNT1 N/A
    170861 7yp9:D (3.58) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    170862 7ypa:D (3.05) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    170863 7ypa:D (3.05) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    170864 7ypa:D (3.05) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    170865 7ypb:D (3.48) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 36631609
    170866 7ypp:A (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170867 7ypp:A (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170868 7ypp:B (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170869 7ypp:B (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170870 7ypp:C (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170871 7ypp:C (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170872 7ypp:D (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170873 7ypp:D (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170874 7ypp:E (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170875 7ypp:E (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170876 7ypp:F (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170877 7ypp:F (2.2) BS02 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170878 7ypr:A (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170879 7ypr:A (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170880 7ypr:B (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170881 7ypr:B (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170882 7ypr:C (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170883 7ypr:C (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170884 7ypr:D (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170885 7ypr:D (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170886 7ypr:E (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170887 7ypr:E (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170888 7ypr:F (2.101) BS01 ZN 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170889 7ypr:F (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    170890 7ypy:A (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    170891 7ypy:A (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    170892 7ypy:F (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    170893 7ypy:N (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    170894 7ypy:N (1.5) BS04 MG 7.1.1.9 GO:0004129 ... P00396 27605664
    170895 7ypy:S (1.5) BS01 ZN ? GO:0005740 ... P00428 27605664
    170896 7ypz:A (2.15) BS01 MG 3.6.5.- GO:0000054 ... P62826 36622814
    170897 7yq2:A (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P0A446 36334624
    170898 7yq2:D (1.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 36334624
    170899 7yq2:J (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    170900 7yq2:O (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    170901 7yq2:a (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P0A446 36334624
    170902 7yq2:c (1.9) BS02 CA ? GO:0005737 ... Q8DIF8 36334624
    170903 7yq2:d (1.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 36334624
    170904 7yq2:j (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    170905 7yq2:o (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    170906 7yq7:A (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... Q8DIV4 36334624
    170907 7yq7:D (1.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 36334624
    170908 7yq7:J (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    170909 7yq7:O (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    170910 7yq7:a (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... Q8DIV4 36334624
    170911 7yq7:c (1.9) BS02 CA ? GO:0005737 ... Q8DIF8 36334624
    170912 7yq7:d (1.9) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 36334624
    170913 7yq7:j (1.9) BS01 MG ? GO:0009523 ... P59087 36334624
    170914 7yq7:o (1.9) BS01 CA ? GO:0009654 ... P0A431 36334624
    170915 7yq8:A (3.9) BS03 MG 5.6.2.2 GO:0000712 ... Q02880 38097570
    170916 7yq8:B (3.9) BS03 MG 5.6.2.2 GO:0000712 ... Q02880 38097570
    170917 7yqa:A (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    170918 7yqa:B (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    170919 7yqa:C (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    170920 7yqa:D (1.85) BS01 MG 4.1.2.42 GO:0016829 ... A0A1C9ZZ39 36748339
    170921 7yqf:A (1.54) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    170922 7yqf:B (1.54) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    170923 7yqs:A (1.25) BS05 CA ? GO:0016829 ... A0A8D5PZ14 38382672
    170924 7yr2:A (3.3) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    170925 7yr3:D (3.52) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    170926 7yr3:G (3.52) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 36270286
    170927 7yr9:A (1.7) BS01 ZN 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    170928 7yr9:B (1.7) BS01 ZN 7.1.1.8 GO:0008121 ... D1MZ11 37689761
    170929 7yrb:A (1.51) BS01 ZN ? GO:0008270 ... B3KUR1 N/A
    170930 7yrb:A (1.51) BS02 ZN ? GO:0008270 ... B3KUR1 N/A
    170931 7yrb:A (1.51) BS03 ZN ? GO:0008270 ... B3KUR1 N/A
    170932 7yrd:K (3.2) BS02 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    170933 7yrg:K (4.2) BS02 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    170934 7yrg:L (4.2) BS03 ZN 2.1.1.361
    2.1.1.362
    GO:0042799 ... Q4FZB7 37536340
    170935 7yrp:A (2.0) BS01 ZN 3.5.2.6 GO:0016787 ... F8UTU0 N/A
    170936 7yrp:A (2.0) BS02 ZN 3.5.2.6 GO:0016787 ... F8UTU0 N/A
    170937 7yrp:B (2.0) BS01 ZN 3.5.2.6 GO:0016787 ... F8UTU0 N/A
    170938 7yrp:B (2.0) BS02 ZN 3.5.2.6 GO:0016787 ... F8UTU0 N/A
    170939 7yrs:A (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170940 7yrs:B (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170941 7yrs:C (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170942 7yrs:D (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170943 7yrs:E (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170944 7yrs:F (2.802) BS01 ZN 5.3.1.17 GO:0008270 ... C2JUP1 38239764
    170945 7yse:A (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    170946 7yse:B (2.907) BS03 MG 6.1.1.14 GO:0000166 ... P00960 36753552
    170947 7ysf:A (2.4) BS03 ZN ? N/A Q96C55 38086788
    170948 7ysf:A (2.4) BS04 ZN ? N/A Q96C55 38086788
    170949 7ysf:A (2.4) BS05 ZN ? N/A Q96C55 38086788
    170950 7ysf:A (2.4) BS06 ZN ? N/A Q96C55 38086788
    170951 7ysh:A (2.74) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    170952 7ysi:A (1.202) BS01 ZN 1.8.1.8 GO:0005737 ... A0A219CD23 36752373
    170953 7ysi:A (1.202) BS02 ZN 1.8.1.8 GO:0005737 ... A0A219CD23 36752373
    170954 7ysu:A (3.2) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    170955 7ysu:E (3.2) BS05 CU 2.7.10.1 N/A P22607 37286607
    170956 7ysw:A (3.03) BS01 ZN 3.2.1.31 GO:0003085 ... Q9UEF7 37286607
    170957 7ysx:A (1.65) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    170958 7ysx:B (1.65) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37094153
    170959 7ytq:A (1.6) BS02 CA ? N/A Q9UJ71 N/A
    170960 7ytq:B (1.6) BS02 CA ? N/A Q9UJ71 N/A
    170961 7ytq:C (1.6) BS02 CA ? N/A Q9UJ71 N/A
    170962 7ytq:D (1.6) BS03 CA ? N/A Q9UJ71 N/A
    170963 7ytw:A (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    170964 7ytw:A (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    170965 7ytw:B (3.2) BS01 NA ? GO:0005737 ... Q9Z2J0 36914666
    170966 7ytw:B (3.2) BS02 NA ? GO:0005737 ... Q9Z2J0 36914666
    170967 7yua:A (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    170968 7yua:A (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    170969 7yua:A (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    170970 7yua:B (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    170971 7yua:B (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    170972 7yua:B (2.5) BS04 MG ? GO:0046872 ... G8HX37 N/A
    170973 7yua:C (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    170974 7yua:D (2.5) BS02 MG ? GO:0046872 ... G8HX37 N/A
    170975 7yua:D (2.5) BS03 MG ? GO:0046872 ... G8HX37 N/A
    170976 7yui:B (2.599) BS01 ZN 2.3.2.31 N/A Q9BYM8 37831767
    170977 7yui:B (2.599) BS02 ZN 2.3.2.31 N/A Q9BYM8 37831767
    170978 7yui:B (2.599) BS03 ZN 2.3.2.31 N/A Q9BYM8 37831767
    170979 7yui:B (2.599) BS04 ZN 2.3.2.31 N/A Q9BYM8 37831767
    170980 7yui:B (2.599) BS05 ZN 2.3.2.31 N/A Q9BYM8 37831767
    170981 7yuj:A (1.865) BS01 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170982 7yuj:A (1.865) BS02 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170983 7yuj:A (1.865) BS03 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170984 7yuj:A (1.865) BS04 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170985 7yuj:A (1.865) BS05 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170986 7yuj:B (1.865) BS01 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170987 7yuj:B (1.865) BS02 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170988 7yuj:B (1.865) BS03 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170989 7yuj:B (1.865) BS04 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170990 7yuj:B (1.865) BS05 ZN 2.3.2.31 GO:0008270 ... Q9BYM8 37831767
    170991 7yv8:A (2.94) BS01 ZN 3.4.-.-
    3.4.17.23
    GO:0006508 ... A0A1U7QTA1 37479708
    170992 7yva:A (2.93) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    170993 7yva:B (2.93) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    170994 7yvq:A (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    170995 7yvq:A (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    170996 7yvq:A (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    170997 7yvq:B (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419
    170998 7yvq:B (3.18) BS02 CA ? GO:0005576 ... A8DS70 36253419
    170999 7yvq:B (3.18) BS03 CA ? GO:0005576 ... A8DS70 36253419
    171000 7yvq:C (3.18) BS01 CA ? GO:0005576 ... A8DS70 36253419

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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