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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168401 7wae:B (2.64) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168402 7wae:B (2.64) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168403 7wae:C (2.64) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168404 7wae:C (2.64) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168405 7wae:C (2.64) BS04 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168406 7wae:D (2.64) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168407 7wae:D (2.64) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168408 7wae:D (2.64) BS04 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168409 7waf:A (2.52) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168410 7waf:A (2.52) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168411 7waf:B (2.52) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168412 7waf:B (2.52) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168413 7waf:C (2.52) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168414 7waf:C (2.52) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168415 7waf:C (2.52) BS04 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168416 7waf:D (2.52) BS02 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168417 7waf:D (2.52) BS03 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168418 7waf:D (2.52) BS04 MG 6.3.2.29
    6.3.2.30
    GO:0004326 ... Q113V7 36042318
    168419 7wah:A (2.45) BS03 ZN ? GO:0051607 ... A0A401FT36 35643083
    168420 7wah:A (2.45) BS04 ZN ? GO:0051607 ... A0A401FT36 35643083
    168421 7wah:A (2.45) BS05 ZN ? GO:0051607 ... A0A401FT36 35643083
    168422 7wah:A (2.45) BS06 ZN ? GO:0051607 ... A0A401FT36 35643083
    168423 7waj:A (2.254) BS02 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168424 7waj:A (2.254) BS03 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168425 7wal:A (2.29) BS01 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168426 7wal:A (2.29) BS02 CO 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168427 7wao:A (2.582) BS01 MN 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168428 7wao:A (2.582) BS02 MN 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    168429 7wb2:A (1.8) BS01 FE ? GO:0004462 ... Q4R0L3 35415958
    168430 7wb2:A (1.8) BS02 FE ? GO:0004462 ... Q4R0L3 35415958
    168431 7wb2:A (1.8) BS03 FE ? GO:0004462 ... Q4R0L3 35415958
    168432 7wb2:B (1.8) BS01 FE ? GO:0004462 ... Q4R0L3 35415958
    168433 7wb2:C (1.8) BS01 FE ? GO:0004462 ... Q4R0L3 35415958
    168434 7wb2:C (1.8) BS02 FE ? GO:0004462 ... Q4R0L3 35415958
    168435 7wb2:C (1.8) BS03 FE ? GO:0004462 ... Q4R0L3 35415958
    168436 7wb2:D (1.8) BS01 FE ? GO:0004462 ... Q4R0L3 35415958
    168437 7wb2:D (1.8) BS02 FE ? GO:0004462 ... Q4R0L3 35415958
    168438 7wb6:A (1.48) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    168439 7wb7:A (1.45) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    168440 7wb8:A (1.38) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    168441 7wb9:A (1.56) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    168442 7wba:A (1.45) BS02 CA 3.4.21.4 GO:0004175 ... P00760 35647681
    168443 7wbc:A (2.0) BS02 CA ? GO:0000166 ... A0A098BU97 N/A
    168444 7wbc:B (2.0) BS02 CA ? GO:0000166 ... A0A098BU97 N/A
    168445 7wbl:A (3.4) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35093192
    168446 7wbo:A (1.6) BS01 CA ? GO:0005509 ... I2DDG2 36602420
    168447 7wbo:A (1.6) BS02 CA ? GO:0005509 ... I2DDG2 36602420
    168448 7wbo:A (1.6) BS03 CA ? GO:0005509 ... I2DDG2 36602420
    168449 7wbo:A (1.6) BS04 CA ? GO:0005509 ... I2DDG2 36602420
    168450 7wbp:A (3.0) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35093192
    168451 7wbq:A (3.34) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35093192
    168452 7wbq:C (3.34) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 35093192
    168453 7wbv:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168454 7wbv:A (4.1) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168455 7wbv:A (4.1) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168456 7wbv:B (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37120012
    168457 7wbv:C (4.1) BS01 ZN ? GO:0000428 ... C4R7L2 37120012
    168458 7wbv:I (4.1) BS01 ZN ? GO:0000428 ... F2QPE6 37120012
    168459 7wbv:I (4.1) BS02 ZN ? GO:0000428 ... F2QPE6 37120012
    168460 7wbv:J (4.1) BS01 ZN ? GO:0000428 ... C4R009 37120012
    168461 7wbv:L (4.1) BS01 ZN ? GO:0001054 ... F2QMI1 37120012
    168462 7wbv:M (4.1) BS01 ZN ? GO:0000993 ... C4QZ45 37120012
    168463 7wbv:V (4.1) BS01 ZN ? GO:0000775 ... C4R0E6 37120012
    168464 7wbw:A (7.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168465 7wbw:A (7.1) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168466 7wbw:B (7.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37120012
    168467 7wbw:C (7.1) BS01 ZN ? GO:0000428 ... C4R7L2 37120012
    168468 7wbw:I (7.1) BS01 ZN ? GO:0000428 ... F2QPE6 37120012
    168469 7wbw:I (7.1) BS02 ZN ? GO:0000428 ... F2QPE6 37120012
    168470 7wbw:J (7.1) BS01 ZN ? GO:0000428 ... C4R009 37120012
    168471 7wbw:L (7.1) BS01 ZN ? GO:0001054 ... F2QMI1 37120012
    168472 7wbw:V (7.1) BS01 ZN ? GO:0000775 ... C4R0E6 37120012
    168473 7wbx:A (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168474 7wbx:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168475 7wbx:A (4.0) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 37120012
    168476 7wbx:B (4.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 37120012
    168477 7wbx:C (4.0) BS01 ZN ? GO:0000428 ... C4R7L2 37120012
    168478 7wbx:I (4.0) BS01 ZN ? GO:0000428 ... F2QPE6 37120012
    168479 7wbx:I (4.0) BS02 ZN ? GO:0000428 ... F2QPE6 37120012
    168480 7wbx:J (4.0) BS01 ZN ? GO:0000428 ... C4R009 37120012
    168481 7wbx:L (4.0) BS01 ZN ? GO:0001054 ... F2QMI1 37120012
    168482 7wbx:M (4.0) BS01 ZN ? GO:0000993 ... C4QZ45 37120012
    168483 7wbx:V (4.0) BS01 ZN ? GO:0000775 ... C4R0E6 37120012
    168484 7wc4:A (3.2) BS03 MG ? GO:0004930 ... P28223 35084960
    168485 7wc5:A (3.2) BS01 MG ? GO:0004930 ... P28223 35084960
    168486 7wc6:A (2.6) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    35084960
    168487 7wc7:A (2.6) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    35084960
    168488 7wc8:A (2.45) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    35084960
    168489 7wc9:A (2.5) BS01 MG ? GO:0004930 ... P0ABE7
    P28223
    35084960
    168490 7wca:A (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168491 7wca:A (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168492 7wca:B (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168493 7wca:B (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168494 7wca:C (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168495 7wca:D (1.78) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168496 7wca:D (1.78) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    168497 7wcf:A (1.3636) BS02 MG ? GO:0004674 ... Q5ZSZ6 35882877
    168498 7wcf:A (1.3636) BS03 MG ? GO:0004674 ... Q5ZSZ6 35882877
    168499 7wcv:A (2.3) BS02 MN 1.14.11.-
    1.14.11.53
    GO:0001659 ... Q9C0B1 35793358
    168500 7wdb:A (2.4) BS02 ZN ? GO:0005216 ... Q9UL62 35821012
    168501 7wdb:A (2.4) BS03 CA ? GO:0005216 ... Q9UL62 35821012
    168502 7wdb:B (2.4) BS02 ZN ? GO:0005216 ... Q9UL62 35821012
    168503 7wdb:B (2.4) BS03 CA ? GO:0005216 ... Q9UL62 35821012
    168504 7wdb:C (2.4) BS03 ZN ? GO:0005216 ... Q9UL62 35821012
    168505 7wdb:C (2.4) BS04 CA ? GO:0005216 ... Q9UL62 35821012
    168506 7wdb:D (2.4) BS03 ZN ? GO:0005216 ... Q9UL62 35821012
    168507 7wdb:D (2.4) BS04 CA ? GO:0005216 ... Q9UL62 35821012
    168508 7wdc:A (2.84) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35771042
    168509 7wdc:B (2.84) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35771042
    168510 7wdt:A (1.65) BS03 CA 3.2.1.52 GO:0004553 ... D4QAP5 36864192
    168511 7wdu:A (2.23) BS03 CA 3.2.1.52 GO:0004553 ... D4QAP5 36864192
    168512 7weg:A (2.0) BS02 ZN ? N/A E9Q9W7 35695292
    168513 7weg:B (2.0) BS02 ZN ? N/A E9Q9W7 35695292
    168514 7wf3:B (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    168515 7wf3:D (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    168516 7wf3:F (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    168517 7wf3:H (3.4) BS01 K ? GO:0005216 ... P22001 35091471
    168518 7wfc:A (2.6) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.50
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... U3N841 37130166
    168519 7wfx:A (1.95) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168520 7wfx:B (1.95) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168521 7wg1:A (2.19) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168522 7wg1:B (2.19) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168523 7wg2:A (1.76) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168524 7wg4:A (1.51) BS01 ZN 2.3.2.8 GO:0004057 ... Q6CXX6 35878037
    168525 7wgr:A (2.92) BS01 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    168526 7wgr:A (2.92) BS02 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    168527 7wgr:B (2.92) BS02 CA 1.2.4.2 GO:0016624 ... Q02218 N/A
    168528 7wgr:B (2.92) BS03 MG 1.2.4.2 GO:0016624 ... Q02218 N/A
    168529 7wh0:A (1.8) BS01 FE ? GO:0003834 ... Q9U2E4 35223999
    168530 7wh0:B (1.8) BS01 FE ? GO:0003834 ... Q9U2E4 35223999
    168531 7wh1:A (1.9) BS01 FE ? GO:0003834 ... Q9TXT9 35223999
    168532 7wh4:A (2.8) BS01 MN ? GO:0003677 ... I6X7F9 N/A
    168533 7wh4:B (2.8) BS01 MN ? GO:0003677 ... I6X7F9 N/A
    168534 7wh5:N (2.13) BS03 MG 3.4.21.92 GO:0004176 ... Q16740 36376309
    168535 7whf:C (2.1) BS01 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168536 7whf:C (2.1) BS02 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168537 7whf:C (2.1) BS03 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168538 7whf:C (2.1) BS04 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168539 7whf:C (2.1) BS05 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168540 7whf:C (2.1) BS06 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168541 7whf:C (2.1) BS07 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168542 7whf:C (2.1) BS08 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168543 7whf:G (2.1) BS01 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168544 7whf:G (2.1) BS02 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168545 7whf:G (2.1) BS03 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168546 7whf:G (2.1) BS04 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168547 7whf:G (2.1) BS05 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168548 7whf:G (2.1) BS06 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168549 7whf:G (2.1) BS07 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168550 7whf:G (2.1) BS08 CA ? GO:0005546 ... A0A1Q9NVH4 N/A
    168551 7whg:G (3.25) BS01 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168552 7whg:G (3.25) BS02 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168553 7whg:G (3.25) BS03 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168554 7whg:G (3.25) BS04 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168555 7whg:G (3.25) BS05 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168556 7whg:G (3.25) BS06 CA ? GO:0005546 ... A0A0F8Y9R4 N/A
    168557 7whh:A (2.6) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 N/A
    168558 7whs:A (3.1) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168559 7whs:B (3.1) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168560 7whs:D (3.1) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168561 7whs:F (3.1) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168562 7wht:A (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168563 7wht:B (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168564 7wht:C (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168565 7wht:D (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168566 7wht:E (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168567 7wht:F (3.5) BS02 MG 2.7.7.13 GO:0004475 ... E9BG32 36038534
    168568 7whw:A (3.1) BS02 MG 7.6.2.1 GO:0000166 ... P32660 35294892
    168569 7wi1:A (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168570 7wi1:B (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168571 7wi1:C (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168572 7wi1:D (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168573 7wi1:E (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168574 7wi1:F (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168575 7wi1:G (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168576 7wi1:H (1.61) BS01 ZN 3.5.2.6 GO:0008800 ... A0A2U8UYM6 32664695
    168577 7wi4:A (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168578 7wi4:B (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168579 7wi4:B (3.4) BS03 MG 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168580 7wi4:C (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168581 7wi4:D (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168582 7wi4:E (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168583 7wi4:F (3.4) BS02 ZN 3.4.24.- GO:0004176 ... P0AAI3 35649372
    168584 7wi7:A (6.6) BS01 ZN 3.6.4.12 GO:0000724 ... Q9UJA3 N/A
    168585 7wi7:B (6.6) BS01 ZN 3.6.4.12 GO:0003677 ... Q9NXL9 N/A
    168586 7wid:A (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168587 7wid:B (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168588 7wid:C (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168589 7wid:E (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168590 7wid:F (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168591 7wid:G (1.9) BS03 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168592 7wid:H (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168593 7wid:I (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168594 7wid:J (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168595 7wid:K (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168596 7wid:L (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168597 7wid:M (1.9) BS02 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168598 7wid:N (1.9) BS03 MG 3.4.21.92 GO:0004176 ... Q2G036 36376309
    168599 7wik:C (1.87) BS01 MG 3.1.-.- GO:0000175 ... A0R1E6 36244449
    168600 7wir:A (1.5) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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