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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167401 7vd8:X (1.96) BS06 ZN 1.16.3.1 GO:0004322 ... P02794 34907237
    167402 7vdv:A (3.4) BS04 MG 3.6.4.- GO:0005524 ... P51532 35477757
    167403 7ve3:A (2.7) BS02 CA N/A GO:0004601 ... N/A 34761444
    167404 7ve6:A (2.77) BS02 MG ? GO:0000160 ... Q7A2Q1 35481641
    167405 7ve6:B (2.77) BS02 MG ? GO:0000160 ... Q7A2Q1 35481641
    167406 7vev:A (1.498) BS01 CA N/A N/A N/A 35879323
    167407 7vf9:D (4.04) BS01 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    167408 7vf9:D (4.04) BS02 ZN 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    167409 7vf9:D (4.04) BS03 MG 2.7.7.6 GO:0000287 ... Q9HWC9 35859063
    167410 7vfc:A (1.21) BS01 CU N/A N/A N/A N/A
    167411 7vfp:E (4.03) BS01 MG 7.6.2.5 GO:0005515 ... P33931 36307425
    167412 7vfs:A (2.8) BS05 CA ? GO:0001540 ... Q00975 34731621
    167413 7vfs:B (2.8) BS01 CA ? N/A P54289 34731621
    167414 7vfu:A (3.0) BS06 CA ? GO:0001540 ... Q00975 34731621
    167415 7vfu:B (3.0) BS01 CA ? N/A P54289 34731621
    167416 7vfv:A (3.0) BS06 CA ? GO:0001540 ... Q00975 34731621
    167417 7vfv:B (3.0) BS01 CA ? N/A P54289 34731621
    167418 7vfw:A (3.3) BS06 CA ? GO:0001540 ... Q00975 34731621
    167419 7vfw:B (3.3) BS01 CA ? N/A P54289 34731621
    167420 7vg2:A (3.1) BS03 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    167421 7vg2:A (3.1) BS04 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    167422 7vg2:A (3.1) BS05 ZN 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    167423 7vg3:A (3.73) BS03 CA 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    167424 7vg3:A (3.73) BS04 ZN 3.1.26.- GO:0003676 ... Q9LXW7 34648373
    167425 7vg8:A (2.04) BS02 MN 3.1.21.- GO:0005198 ... H6WA92 N/A
    167426 7vgf:A (3.3) BS02 MG ? GO:0005515 ... O75027 N/A
    167427 7vgf:B (3.3) BS02 MG ? GO:0005515 ... O75027 N/A
    167428 7vgh:B (3.39) BS01 MG 7.6.2.1 GO:0000166 ... O43520 35349344
    167429 7vgi:B (3.36) BS01 MG 7.6.2.1 GO:0000166 ... O43520 35349344
    167430 7vgm:A (2.27) BS01 FE 1.14.16.1 GO:0004497 ... Q818B4 35503207
    167431 7vgn:A (1.83) BS02 FE ? GO:0005506 ... A6YEH4 36176888
    167432 7vgq:B (4.0) BS01 ZN ? GO:0003723 ... P0AEX9
    Q6IUF9
    34697302
    167433 7vgq:B (4.0) BS02 ZN ? GO:0003723 ... P0AEX9
    Q6IUF9
    34697302
    167434 7vh1:B (4.2) BS01 ZN ? GO:0003723 ... P0AEX9
    Q6IUF9
    34697302
    167435 7vh1:B (4.2) BS02 ZN ? GO:0003723 ... P0AEX9
    Q6IUF9
    34697302
    167436 7vh4:C (2.3) BS01 MG 3.1.15.- GO:0000175 ... P0A784 36244449
    167437 7vhr:A (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167438 7vhr:B (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167439 7vhr:C (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167440 7vhr:D (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167441 7vhr:E (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167442 7vhr:F (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167443 7vhr:G (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167444 7vhr:H (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167445 7vhr:I (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167446 7vhr:J (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167447 7vhr:K (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167448 7vhr:L (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167449 7vhr:M (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167450 7vhr:N (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167451 7vhr:O (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167452 7vhr:P (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167453 7vhr:Q (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167454 7vhr:R (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167455 7vhr:S (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167456 7vhr:T (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167457 7vhr:U (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167458 7vhr:V (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167459 7vhr:W (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167460 7vhr:X (2.756) BS01 MG 1.16.3.1 GO:0004322 ... Q2QJV4 35090095
    167461 7vhy:A (2.3) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167462 7vhy:A (2.3) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167463 7vhy:A (2.3) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167464 7vhy:B (2.3) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167465 7vhy:B (2.3) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167466 7vhy:B (2.3) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167467 7vhz:A (2.0) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167468 7vhz:A (2.0) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167469 7vhz:A (2.0) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167470 7vhz:B (2.0) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167471 7vhz:B (2.0) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167472 7vhz:B (2.0) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167473 7vi0:A (2.1) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167474 7vi0:A (2.1) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167475 7vi0:A (2.1) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167476 7vi0:B (2.1) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167477 7vi0:B (2.1) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167478 7vi0:B (2.1) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q09472 35413416
    167479 7vi6:A (2.0) BS01 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167480 7vi6:A (2.0) BS02 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167481 7vi6:B (2.0) BS01 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167482 7vi6:B (2.0) BS02 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167483 7vi6:B (2.0) BS03 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167484 7vi7:A (2.0) BS01 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167485 7vi7:A (2.0) BS02 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167486 7vi7:B (2.0) BS01 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167487 7vi7:B (2.0) BS02 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167488 7vi7:B (2.0) BS03 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167489 7vi7:B (2.0) BS04 MG 3.2.1.52 GO:0004553 ... B2UPP0 N/A
    167490 7vi8:A (1.83) BS01 ZN 3.5.1.105 GO:0000272 ... A6T7U7 36002585
    167491 7vi8:B (1.83) BS01 ZN 3.5.1.105 GO:0000272 ... A6T7U7 36002585
    167492 7vib:A (3.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 N/A
    167493 7vib:C (3.2) BS01 ZN 3.4.17.-
    3.4.17.23
    GO:0006508 ... Q9BYF1 N/A
    167494 7vip:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    167495 7viq:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    167496 7viq:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    167497 7viq:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    167498 7viq:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    167499 7vir:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    167500 7vir:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    167501 7vir:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    167502 7vir:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    167503 7vis:A (1.85) BS01 AU ? GO:0005506 ... P02791 36697940
    167504 7vis:A (1.85) BS02 AU ? GO:0005506 ... P02791 36697940
    167505 7vis:A (1.85) BS03 AU ? GO:0005506 ... P02791 36697940
    167506 7vis:A (1.85) BS04 AU ? GO:0005506 ... P02791 36697940
    167507 7vit:A (1.9) BS01 AU ? GO:0005506 ... P02791 36697940
    167508 7vit:A (1.9) BS02 AU ? GO:0005506 ... P02791 36697940
    167509 7vit:A (1.9) BS03 AU ? GO:0005506 ... P02791 36697940
    167510 7vit:A (1.9) BS04 AU ? GO:0005506 ... P02791 36697940
    167511 7vit:A (1.9) BS05 AU ? GO:0005506 ... P02791 36697940
    167512 7viu:A (1.5) BS01 AU ? GO:0005506 ... P02791 36697940
    167513 7viu:A (1.5) BS02 AU ? GO:0005506 ... P02791 36697940
    167514 7viu:A (1.5) BS03 AU ? GO:0005506 ... P02791 36697940
    167515 7vju:A (2.27) BS02 FE2 ? GO:0005506 ... B7WRJ9 35007143
    167516 7vju:C (2.27) BS02 FE2 ? GO:0005506 ... B7WRJ9 35007143
    167517 7vju:E (2.27) BS02 FE2 ? GO:0005506 ... B7WRJ9 35007143
    167518 7vjv:A (1.75) BS01 MN 1.14.11.- GO:0005515 ... Q3KRA9 35120926
    167519 7vke:A (1.9) BS01 MG 2.4.99.20
    3.2.2.-
    3.2.2.6
    GO:0061809 ... P28907 35867844
    167520 7vkx:A (1.56) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    167521 7vky:B (2.0) BS03 CA ? GO:0004553 ... I0AIT9 35065074
    167522 7vky:B (2.0) BS04 CA ? GO:0004553 ... I0AIT9 35065074
    167523 7vkz:B (2.0) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167524 7vkz:B (2.0) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    167525 7vl0:B (1.79) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167526 7vl1:B (1.6) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167527 7vl2:B (1.8) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167528 7vl3:B (1.82) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167529 7vl4:B (1.83) BS02 CA ? GO:0004553 ... I0AIT9 35065074
    167530 7vl5:B (1.93) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167531 7vl6:B (1.75) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167532 7vl7:B (1.89) BS01 CA ? GO:0004553 ... I0AIT9 35065074
    167533 7vlc:B (2.2) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    167534 7vlc:F (2.2) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    167535 7vld:B (2.1) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    167536 7vld:F (2.1) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    167537 7vlf:B (2.4) BS02 CA ? GO:0001666 ... S0BBR6 35797404
    167538 7vlf:F (2.4) BS03 CA ? GO:0001666 ... S0BBR6 35797404
    167539 7vlm:A (1.38) BS01 MG ? GO:0046872 ... A0A2G3NPZ8 N/A
    167540 7vlr:A (3.4) BS03 MG ? GO:0000165 ... Q63563 35562524
    167541 7vls:A (3.3) BS03 MG ? GO:0000165 ... Q63563 35562524
    167542 7vlt:A (3.1) BS04 MG ? GO:0000165 ... Q63563 35562524
    167543 7vlz:A (1.6) BS03 ZN 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    167544 7vlz:A (1.6) BS04 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    167545 7vlz:A (1.6) BS05 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    167546 7vlz:A (1.6) BS06 CA 3.4.24.3 GO:0004222 ... A0A8B3DGT3 N/A
    167547 7vmd:A (1.69) BS01 CA N/A GO:0016787 ... N/A 35935485
    167548 7vmd:A (1.69) BS02 CA N/A GO:0016787 ... N/A 35935485
    167549 7vme:A (1.78) BS01 CA N/A GO:0016787 ... N/A N/A
    167550 7vme:A (1.78) BS02 CA N/A GO:0016787 ... N/A N/A
    167551 7vmg:A (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167552 7vmg:C (2.39) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167553 7vmj:A (2.9) BS02 MG 3.6.5.- GO:0000226 ... P81947 N/A
    167554 7vmj:A (2.9) BS03 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167555 7vmj:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167556 7vmk:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167557 7vmk:C (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    167558 7vml:A (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167559 7vml:B (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167560 7vml:C (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167561 7vml:D (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167562 7vmm:A (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167563 7vmm:B (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167564 7vmm:C (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167565 7vmm:D (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167566 7vmn:A (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167567 7vmn:B (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167568 7vmn:C (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167569 7vmn:D (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167570 7vmo:A (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167571 7vmo:A (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167572 7vmo:B (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167573 7vmo:B (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167574 7vmo:C (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167575 7vmo:C (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167576 7vmo:D (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167577 7vmo:D (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167578 7vmp:A (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167579 7vmp:A (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167580 7vmp:B (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167581 7vmp:B (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167582 7vmp:C (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167583 7vmp:C (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167584 7vmp:D (3.5) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167585 7vmp:D (3.5) BS02 CA ? GO:0001666 ... E9Q401 35595836
    167586 7vmq:A (3.7) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167587 7vmq:A (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167588 7vmq:B (3.7) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167589 7vmq:B (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167590 7vmq:C (3.7) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167591 7vmq:C (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167592 7vmq:D (3.7) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167593 7vmq:D (3.7) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167594 7vmr:A (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167595 7vmr:B (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167596 7vmr:C (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167597 7vmr:D (3.3) BS01 ZN ? GO:0001666 ... E9Q401 35595836
    167598 7vms:A (3.8) BS01 ZN ? GO:0001666 ... E9Q401 N/A
    167599 7vms:A (3.8) BS02 CA ? GO:0001666 ... E9Q401 N/A
    167600 7vms:B (3.8) BS01 ZN ? GO:0001666 ... E9Q401 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218