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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167001 7v1w:C (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167002 7v1w:D (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167003 7v1w:D (1.86) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167004 7v1w:E (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167005 7v1w:E (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167006 7v1w:F (1.86) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167007 7v1w:F (1.86) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167008 7v1x:A (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167009 7v1x:A (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167010 7v1x:B (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167011 7v1x:B (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167012 7v1x:C (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167013 7v1x:C (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167014 7v1x:D (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167015 7v1x:D (1.76) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167016 7v1x:E (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167017 7v1x:E (1.76) BS03 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167018 7v1x:F (1.76) BS01 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167019 7v1x:F (1.76) BS02 CA ? GO:0046872 ... A0A6L9SN29 34688653
    167020 7v25:A (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167021 7v25:B (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167022 7v25:C (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167023 7v25:D (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167024 7v25:E (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167025 7v25:F (2.74) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167026 7v28:A (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167027 7v28:B (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167028 7v28:C (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167029 7v28:D (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167030 7v28:E (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167031 7v28:F (3.07) BS01 FE2 ? GO:0005506 ... B7WQT1 34800435
    167032 7v2c:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167033 7v2c:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167034 7v2d:M (3.3) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167035 7v2d:T (3.3) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167036 7v2e:M (2.8) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167037 7v2e:T (2.8) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167038 7v2f:M (3.1) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167039 7v2f:T (3.1) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167040 7v2h:M (2.5) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167041 7v2h:T (2.5) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167042 7v2k:M (2.7) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167043 7v2k:T (2.7) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167044 7v2l:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167045 7v2m:D (3.4) BS02 ZN ? GO:0003723 ... P80373 35316014
    167046 7v2m:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167047 7v2n:D (3.6) BS02 ZN ? GO:0003723 ... P80373 35316014
    167048 7v2n:N (3.6) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167049 7v2o:D (3.5) BS02 ZN ? GO:0003723 ... P80373 35316014
    167050 7v2o:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167051 7v2p:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167052 7v2q:D (3.24) BS02 ZN ? GO:0003723 ... P80373 35316014
    167053 7v2q:N (3.24) BS02 ZN ? GO:0003735 ... P0DOY6 35316014
    167054 7v2r:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167055 7v2r:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167056 7v2t:A (2.20006) BS02 FE2 N/A N/A N/A N/A
    167057 7v2u:A (2.0001) BS02 FE2 N/A N/A N/A N/A
    167058 7v2x:A (2.08387) BS02 FE2 N/A N/A N/A N/A
    167059 7v30:M (2.7) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167060 7v30:T (2.7) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167061 7v31:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167062 7v31:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167063 7v32:M (3.2) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167064 7v32:T (3.2) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167065 7v33:M (2.6) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167066 7v33:T (2.6) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167067 7v34:A (2.00017) BS03 FE2 N/A N/A N/A N/A
    167068 7v36:A (1.96009) BS03 FE2 N/A N/A N/A N/A
    167069 7v37:A (2.403) BS01 ZN 3.1.13.- N/A P13699 34977900
    167070 7v37:B (2.403) BS01 ZN 3.1.13.- N/A P13699 34977900
    167071 7v38:A (2.403) BS01 ZN 3.1.13.- N/A P13699 34977900
    167072 7v38:B (2.403) BS01 ZN 3.1.13.- N/A P13699 34977900
    167073 7v39:A (2.2) BS01 ZN 3.1.13.- N/A P13699 34977900
    167074 7v39:B (2.2) BS01 ZN 3.1.13.- N/A P13699 34977900
    167075 7v3a:A (2.1) BS01 ZN 3.1.13.- N/A P13699 34977900
    167076 7v3a:B (2.1) BS01 ZN 3.1.13.- N/A P13699 34977900
    167077 7v3b:A (1.8) BS01 MG 3.1.13.- N/A P13699 34977900
    167078 7v3b:A (1.8) BS03 ZN 3.1.13.- N/A P13699 34977900
    167079 7v3b:B (1.8) BS01 ZN 3.1.13.- N/A P13699 34977900
    167080 7v3c:A (1.9) BS01 ZN 3.1.13.- N/A P13699 34977900
    167081 7v3c:A (1.9) BS02 MG 3.1.13.- N/A P13699 34977900
    167082 7v3c:B (1.9) BS01 ZN 3.1.13.- N/A P13699 34977900
    167083 7v3c:B (1.9) BS03 MG 3.1.13.- N/A P13699 34977900
    167084 7v3e:A (2.12) BS03 FE2 N/A N/A N/A N/A
    167085 7v3e:B (2.12) BS03 FE2 N/A N/A N/A N/A
    167086 7v3e:C (2.12) BS03 FE2 N/A N/A N/A N/A
    167087 7v3k:A (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    167088 7v3k:B (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    167089 7v3k:C (2.49) BS01 CA ? GO:0016042 ... A3TMR7 N/A
    167090 7v3m:M (2.9) BS04 MG ? GO:0005743 ... A0A4X1V1H9 35145322
    167091 7v3m:T (2.9) BS01 ZN ? GO:0006120 ... F1S031 35145322
    167092 7v3n:A (1.85001) BS01 FE2 N/A N/A N/A N/A
    167093 7v3o:A (1.83005) BS02 FE2 N/A N/A N/A N/A
    167094 7v3u:2 (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35296675
    167095 7v3u:4 (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35296675
    167096 7v3u:5 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35296675
    167097 7v3u:7 (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P38132 35296675
    167098 7v3u:7 (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 35296675
    167099 7v3u:B (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35296675
    167100 7v3u:D (3.2) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35296675
    167101 7v3u:E (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35296675
    167102 7v3u:G (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P38132 35296675
    167103 7v3u:G (3.2) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 35296675
    167104 7v3v:2 (2.9) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35296675
    167105 7v3v:4 (2.9) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35296675
    167106 7v3v:5 (2.9) BS03 MG 3.6.4.12 GO:0000727 ... P29496 35296675
    167107 7v3v:5 (2.9) BS04 ZN 3.6.4.12 GO:0000727 ... P29496 35296675
    167108 7v3v:6 (2.9) BS01 MG 3.6.4.12 GO:0000727 ... P53091 35296675
    167109 7v3v:6 (2.9) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35296675
    167110 7v3v:7 (2.9) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35296675
    167111 7v3v:B (2.9) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 35296675
    167112 7v3v:D (2.9) BS02 ZN 3.6.4.12 GO:0000727 ... P30665 35296675
    167113 7v3v:E (2.9) BS03 ZN 3.6.4.12 GO:0000727 ... P29496 35296675
    167114 7v3v:F (2.9) BS01 MG 3.6.4.12 GO:0000727 ... P53091 35296675
    167115 7v3v:F (2.9) BS03 ZN 3.6.4.12 GO:0000727 ... P53091 35296675
    167116 7v3v:G (2.9) BS03 ZN 3.6.4.12 GO:0000727 ... P38132 35296675
    167117 7v3v:I (2.9) BS01 ZN ? GO:0000775 ... P32325 35296675
    167118 7v3x:C (3.1) BS05 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    167119 7v3x:K (3.1) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    167120 7v3x:N (3.1) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    167121 7v3x:R (3.1) BS03 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    167122 7v3x:R (3.1) BS04 MG 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    167123 7v4f:A (1.98) BS01 FE ? GO:0046872 ... C4NCJ7 N/A
    167124 7v4f:B (1.98) BS02 FE ? GO:0046872 ... C4NCJ7 N/A
    167125 7v4f:B (1.98) BS03 FE ? GO:0046872 ... C4NCJ7 N/A
    167126 7v4g:A (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    167127 7v4g:B (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    167128 7v4g:C (2.1) BS02 MN 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    167129 7v4m:B (1.9) BS02 FE ? GO:0046872 ... C4NCJ7 N/A
    167130 7v4m:B (1.9) BS03 FE ? GO:0046872 ... C4NCJ7 N/A
    167131 7v4n:A (2.2) BS01 FE ? GO:0046872 ... C4NCJ7 N/A
    167132 7v4n:B (2.2) BS01 FE ? GO:0046872 ... C4NCJ7 N/A
    167133 7v4p:A (1.95) BS01 FE ? GO:0046872 ... C4NCJ7 N/A
    167134 7v4v:A (2.3) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167135 7v4v:A (2.3) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167136 7v4v:B (2.3) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167137 7v4v:B (2.3) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167138 7v4v:C (2.3) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167139 7v4v:C (2.3) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167140 7v4v:H (2.3) BS01 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167141 7v4v:H (2.3) BS02 FE 1.16.3.2 GO:0004322 ... Q9X0L2 N/A
    167142 7v4y:A (2.4) BS01 ZN ? GO:0006508 ... Q5SIV0 35276293
    167143 7v52:A (2.38) BS01 FE ? GO:0046872 ... A0A1U8X168 N/A
    167144 7v54:A (2.12) BS01 FE ? GO:0046872 ... A0A1U8X168 N/A
    167145 7v55:A (3.0) BS01 CA 3.1.4.4 GO:0003824 ... Q9HYC2 36216841
    167146 7v56:A (2.27) BS01 FE ? GO:0046872 ... A0A1U8X168 N/A
    167147 7v57:A (2.35) BS01 FE ? GO:0046872 ... A0A1U8X168 N/A
    167148 7v5c:A (3.2) BS03 MG 7.4.2.6 GO:0005524 ... Q9JJ59 36195619
    167149 7v5c:B (3.2) BS04 MG 7.4.2.6 GO:0005524 ... Q9JJ59 36195619
    167150 7v6d:A (2.5) BS01 CA ? GO:0046872 ... A0A5N5DNA6 34638680
    167151 7v6d:B (2.5) BS01 CA ? GO:0046872 ... A0A5N5DNA6 34638680
    167152 7v6f:A (2.98) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    167153 7v6f:B (2.98) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    167154 7v6g:A (2.343) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    167155 7v6g:B (2.343) BS01 ZN 4.1.2.13 GO:0004332 ... Q9URB4 N/A
    167156 7v6p:A (2.9) BS01 CA ? N/A P49321 34819355
    167157 7v6x:A (1.8) BS01 CO 1.13.11.27 GO:0003868 ... P93836 35618678
    167158 7v8f:B (1.66) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167159 7v8f:B (1.66) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167160 7v8g:C (2.75) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167161 7v8g:C (2.75) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167162 7v8g:D (2.75) BS01 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167163 7v8g:D (2.75) BS02 ZN 2.3.2.31 GO:0004842 ... Q96EP0 35294289
    167164 7v8i:D (3.6) BS01 MG 7.6.2.- GO:0005524 ... P75957 36228045
    167165 7v97:A (2.02) BS02 ZN ? GO:0000976 ... P04637 37018419
    167166 7v97:B (2.02) BS02 ZN ? GO:0000976 ... P04637 37018419
    167167 7v97:C (2.02) BS02 ZN ? GO:0000976 ... P04637 37018419
    167168 7v97:D (2.02) BS02 ZN ? GO:0000976 ... P04637 37018419
    167169 7v9n:A (1.9) BS01 ZN 3.4.11.2 GO:0004177 ... A4F9D7 35513512
    167170 7v9o:A (1.77) BS01 ZN 3.4.11.2 GO:0004177 ... A4F9D7 35513512
    167171 7v9p:A (1.8) BS01 ZN 3.4.11.2 GO:0004177 ... A4F9D7 35513512
    167172 7v9p:B (1.8) BS01 ZN 3.4.11.2 GO:0004177 ... A4F9D7 35513512
    167173 7v9q:A (2.67) BS01 ZN 3.4.11.2 GO:0004177 ... A4F9D7 35513512
    167174 7va3:A (1.8) BS02 MN 3.1.15.- GO:0000175 ... P57665 N/A
    167175 7va9:L (3.08) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167176 7va9:M (3.08) BS05 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167177 7va9:l (3.08) BS07 FE2 ? GO:0009772 ... Q3J1A5 35418573
    167178 7va9:m (3.08) BS05 FE2 ? GO:0009772 ... Q3J1A6 35418573
    167179 7vam:C (3.2) BS02 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167180 7vaq:C (3.6) BS01 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167181 7var:C (2.9) BS02 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167182 7vau:A (3.3) BS02 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167183 7vax:A (2.9) BS01 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167184 7vay:C (3.3) BS01 MG 7.1.2.2 GO:0005515 ... Q56403 35260556
    167185 7vb3:A (1.48) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167186 7vb3:A (1.48) BS03 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167187 7vb3:A (1.48) BS04 MG 4.1.2.46 GO:0005829 ... P93243 35101448
    167188 7vb3:B (1.48) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167189 7vb3:B (1.48) BS03 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167190 7vb3:B (1.48) BS04 MG 4.1.2.46 GO:0005829 ... P93243 35101448
    167191 7vb3:C (1.48) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167192 7vb3:C (1.48) BS03 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167193 7vb3:C (1.48) BS04 MG 4.1.2.46 GO:0005829 ... P93243 35101448
    167194 7vb3:D (1.48) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167195 7vb3:D (1.48) BS03 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167196 7vb3:D (1.48) BS04 MG 4.1.2.46 GO:0005829 ... P93243 35101448
    167197 7vb5:A (1.58) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167198 7vb5:A (1.58) BS03 ZN 4.1.2.46 GO:0005829 ... P93243 35101448
    167199 7vb5:A (1.58) BS05 MG 4.1.2.46 GO:0005829 ... P93243 35101448
    167200 7vb5:B (1.58) BS02 ZN 4.1.2.46 GO:0005829 ... P93243 35101448

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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