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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162601 7rqc:1n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162602 7rqc:1t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    162603 7rqc:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 35165455
    162604 7rqc:20 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    162605 7rqc:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162606 7rqc:25 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    162607 7rqc:25 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    162608 7rqc:25 (2.5) BS04 ZN ? GO:0003735 ... P80339 35165455
    162609 7rqc:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 35165455
    162610 7rqc:27 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    162611 7rqc:27 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    162612 7rqc:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162613 7rqc:2D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    162614 7rqc:2D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    162615 7rqc:2D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    162616 7rqc:2D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    162617 7rqc:2D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    162618 7rqc:2D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    162619 7rqc:2D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    162620 7rqc:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162621 7rqc:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162622 7rqc:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162623 7rqc:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162624 7rqc:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162625 7rqc:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162626 7rqc:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162627 7rqc:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162628 7rqc:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    162629 7rqc:2U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    162630 7rqc:2V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    162631 7rqc:2V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    162632 7rqc:2W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162633 7rqc:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162634 7rqc:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    162635 7rqc:2k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    162636 7rqc:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162637 7rqc:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162638 7rqc:2t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    162639 7rqd:10 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    162640 7rqd:10 (2.5) BS04 MG ? GO:0003735 ... P60493 35165455
    162641 7rqd:13 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162642 7rqd:13 (2.5) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    162643 7rqd:14 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162644 7rqd:15 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    162645 7rqd:15 (2.5) BS03 MG ? GO:0003735 ... P80339 35165455
    162646 7rqd:15 (2.5) BS04 ZN ? GO:0003735 ... P80339 35165455
    162647 7rqd:16 (2.5) BS02 ZN ? GO:0000049 ... P35871 35165455
    162648 7rqd:17 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    162649 7rqd:17 (2.5) BS03 MG ? GO:0003735 ... P80340 35165455
    162650 7rqd:18 (2.5) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    162651 7rqd:19 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162652 7rqd:1D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    162653 7rqd:1D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    162654 7rqd:1D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    162655 7rqd:1D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    162656 7rqd:1D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    162657 7rqd:1D (2.5) BS07 MG ? GO:0002181 ... P60405 35165455
    162658 7rqd:1D (2.5) BS08 MG ? GO:0002181 ... P60405 35165455
    162659 7rqd:1D (2.5) BS09 MG ? GO:0002181 ... P60405 35165455
    162660 7rqd:1D (2.5) BS10 MG ? GO:0002181 ... P60405 35165455
    162661 7rqd:1D (2.5) BS11 MG ? GO:0002181 ... P60405 35165455
    162662 7rqd:1D (2.5) BS12 MG ? GO:0002181 ... P60405 35165455
    162663 7rqd:1D (2.5) BS13 MG ? GO:0002181 ... P60405 35165455
    162664 7rqd:1E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162665 7rqd:1E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162666 7rqd:1E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162667 7rqd:1E (2.5) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    162668 7rqd:1E (2.5) BS06 MG ? GO:0003735 ... Q5SHN8 35165455
    162669 7rqd:1F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162670 7rqd:1F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162671 7rqd:1F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162672 7rqd:1F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162673 7rqd:1F (2.5) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    162674 7rqd:1F (2.5) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    162675 7rqd:1F (2.5) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    162676 7rqd:1F (2.5) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    162677 7rqd:1F (2.5) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    162678 7rqd:1F (2.5) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    162679 7rqd:1F (2.5) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    162680 7rqd:1F (2.5) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    162681 7rqd:1G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162682 7rqd:1N (2.5) BS02 MG ? GO:0003729 ... P60488 35165455
    162683 7rqd:1N (2.5) BS03 MG ? GO:0003729 ... P60488 35165455
    162684 7rqd:1P (2.5) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    162685 7rqd:1P (2.5) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    162686 7rqd:1P (2.5) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    162687 7rqd:1Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    162688 7rqd:1Q (2.5) BS04 MG ? GO:0000049 ... P60489 35165455
    162689 7rqd:1Q (2.5) BS05 MG ? GO:0000049 ... P60489 35165455
    162690 7rqd:1R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162691 7rqd:1R (2.5) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    162692 7rqd:1U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    162693 7rqd:1U (2.5) BS03 MG ? GO:0000027 ... P60491 35165455
    162694 7rqd:1U (2.5) BS04 MG ? GO:0000027 ... P60491 35165455
    162695 7rqd:1U (2.5) BS05 MG ? GO:0000027 ... P60491 35165455
    162696 7rqd:1V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    162697 7rqd:1V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    162698 7rqd:1V (2.5) BS04 MG ? GO:0003723 ... P60492 35165455
    162699 7rqd:1W (2.5) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162700 7rqd:1W (2.5) BS03 MG ? GO:0003735 ... Q5SHP3 35165455
    162701 7rqd:1Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162702 7rqd:1d (2.5) BS02 MG ? GO:0003723 ... P80373 35165455
    162703 7rqd:1k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    162704 7rqd:1l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162705 7rqd:1m (2.5) BS02 MG ? GO:0000049 ... P80377 35165455
    162706 7rqd:1m (2.5) BS03 MG ? GO:0000049 ... P80377 35165455
    162707 7rqd:1n (2.5) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    162708 7rqd:1n (2.5) BS03 ZN ? GO:0003735 ... P0DOY6 35165455
    162709 7rqd:1t (2.5) BS02 MG ? GO:0003723 ... P80380 35165455
    162710 7rqd:1y (2.5) BS02 MG ? GO:0005515 ... P0AD49 35165455
    162711 7rqd:20 (2.5) BS03 MG ? GO:0003735 ... P60493 35165455
    162712 7rqd:23 (2.5) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162713 7rqd:24 (2.5) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162714 7rqd:25 (2.5) BS02 MG ? GO:0003735 ... P80339 35165455
    162715 7rqd:25 (2.5) BS03 ZN ? GO:0003735 ... P80339 35165455
    162716 7rqd:26 (2.5) BS02 ZN ? GO:0000049 ... P35871 35165455
    162717 7rqd:27 (2.5) BS02 MG ? GO:0003735 ... P80340 35165455
    162718 7rqd:29 (2.5) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162719 7rqd:2D (2.5) BS02 MG ? GO:0002181 ... P60405 35165455
    162720 7rqd:2D (2.5) BS03 MG ? GO:0002181 ... P60405 35165455
    162721 7rqd:2D (2.5) BS04 MG ? GO:0002181 ... P60405 35165455
    162722 7rqd:2D (2.5) BS05 MG ? GO:0002181 ... P60405 35165455
    162723 7rqd:2D (2.5) BS06 MG ? GO:0002181 ... P60405 35165455
    162724 7rqd:2E (2.5) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162725 7rqd:2E (2.5) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162726 7rqd:2E (2.5) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162727 7rqd:2F (2.5) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162728 7rqd:2F (2.5) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162729 7rqd:2F (2.5) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162730 7rqd:2F (2.5) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162731 7rqd:2G (2.5) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162732 7rqd:2G (2.5) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162733 7rqd:2Q (2.5) BS03 MG ? GO:0000049 ... P60489 35165455
    162734 7rqd:2R (2.5) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162735 7rqd:2U (2.5) BS02 MG ? GO:0000027 ... P60491 35165455
    162736 7rqd:2V (2.5) BS02 MG ? GO:0003723 ... P60492 35165455
    162737 7rqd:2V (2.5) BS03 MG ? GO:0003723 ... P60492 35165455
    162738 7rqd:2Y (2.5) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162739 7rqd:2f (2.5) BS02 MG ? GO:0003735 ... Q5SLP8 35165455
    162740 7rqd:2j (2.5) BS02 MG ? GO:0000049 ... Q5SHN7 35165455
    162741 7rqd:2k (2.5) BS02 MG ? GO:0003735 ... P80376 35165455
    162742 7rqd:2l (2.5) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162743 7rqd:2n (2.5) BS02 ZN ? GO:0003735 ... P0DOY6 35165455
    162744 7rqe:10 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    162745 7rqe:10 (2.4) BS04 MG ? GO:0003735 ... P60493 35165455
    162746 7rqe:10 (2.4) BS05 MG ? GO:0003735 ... P60493 35165455
    162747 7rqe:11 (2.4) BS02 MG ? GO:0003735 ... P60494 35165455
    162748 7rqe:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162749 7rqe:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    162750 7rqe:13 (2.4) BS05 MG ? GO:0003735 ... Q5SHQ6 35165455
    162751 7rqe:14 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162752 7rqe:15 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    162753 7rqe:15 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    162754 7rqe:15 (2.4) BS04 MG ? GO:0003735 ... P80339 35165455
    162755 7rqe:15 (2.4) BS05 ZN ? GO:0003735 ... P80339 35165455
    162756 7rqe:16 (2.4) BS02 ZN ? GO:0000049 ... P35871 35165455
    162757 7rqe:17 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    162758 7rqe:17 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    162759 7rqe:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    162760 7rqe:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    162761 7rqe:19 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162762 7rqe:1D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    162763 7rqe:1D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    162764 7rqe:1D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    162765 7rqe:1D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    162766 7rqe:1D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    162767 7rqe:1D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    162768 7rqe:1D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    162769 7rqe:1D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    162770 7rqe:1D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    162771 7rqe:1D (2.4) BS12 MG ? GO:0002181 ... P60405 35165455
    162772 7rqe:1D (2.4) BS13 MG ? GO:0002181 ... P60405 35165455
    162773 7rqe:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162774 7rqe:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162775 7rqe:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162776 7rqe:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    162777 7rqe:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162778 7rqe:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162779 7rqe:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162780 7rqe:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162781 7rqe:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    162782 7rqe:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    162783 7rqe:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    162784 7rqe:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    162785 7rqe:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    162786 7rqe:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    162787 7rqe:1F (2.4) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    162788 7rqe:1G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162789 7rqe:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162790 7rqe:1N (2.4) BS02 MG ? GO:0003729 ... P60488 35165455
    162791 7rqe:1N (2.4) BS03 MG ? GO:0003729 ... P60488 35165455
    162792 7rqe:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    162793 7rqe:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    162794 7rqe:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    162795 7rqe:1Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    162796 7rqe:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    162797 7rqe:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 35165455
    162798 7rqe:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 35165455
    162799 7rqe:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162800 7rqe:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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