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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    162201 7rq9:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 34707295
    162202 7rq9:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 34707295
    162203 7rq9:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 34707295
    162204 7rq9:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 34707295
    162205 7rq9:1N (2.6) BS02 MG ? GO:0003729 ... P60488 34707295
    162206 7rq9:1N (2.6) BS03 MG ? GO:0003729 ... P60488 34707295
    162207 7rq9:1N (2.6) BS04 MG ? GO:0003729 ... P60488 34707295
    162208 7rq9:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 34707295
    162209 7rq9:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 34707295
    162210 7rq9:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 34707295
    162211 7rq9:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 34707295
    162212 7rq9:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 34707295
    162213 7rq9:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 34707295
    162214 7rq9:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 34707295
    162215 7rq9:1P (2.6) BS07 MG ? GO:0003735 ... Q5SHQ7 34707295
    162216 7rq9:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 34707295
    162217 7rq9:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 34707295
    162218 7rq9:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 34707295
    162219 7rq9:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 34707295
    162220 7rq9:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 34707295
    162221 7rq9:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 34707295
    162222 7rq9:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 34707295
    162223 7rq9:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 34707295
    162224 7rq9:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 34707295
    162225 7rq9:1U (2.6) BS02 MG ? GO:0000027 ... P60491 34707295
    162226 7rq9:1U (2.6) BS03 MG ? GO:0000027 ... P60491 34707295
    162227 7rq9:1U (2.6) BS04 MG ? GO:0000027 ... P60491 34707295
    162228 7rq9:1U (2.6) BS05 MG ? GO:0000027 ... P60491 34707295
    162229 7rq9:1U (2.6) BS06 MG ? GO:0000027 ... P60491 34707295
    162230 7rq9:1U (2.6) BS07 MG ? GO:0000027 ... P60491 34707295
    162231 7rq9:1V (2.6) BS02 MG ? GO:0003723 ... P60492 34707295
    162232 7rq9:1V (2.6) BS03 MG ? GO:0003723 ... P60492 34707295
    162233 7rq9:1V (2.6) BS04 MG ? GO:0003723 ... P60492 34707295
    162234 7rq9:1V (2.6) BS05 MG ? GO:0003723 ... P60492 34707295
    162235 7rq9:1V (2.6) BS06 MG ? GO:0003723 ... P60492 34707295
    162236 7rq9:1V (2.6) BS07 MG ? GO:0003723 ... P60492 34707295
    162237 7rq9:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    162238 7rq9:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 34707295
    162239 7rq9:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 34707295
    162240 7rq9:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 34707295
    162241 7rq9:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 34707295
    162242 7rq9:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    162243 7rq9:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 34707295
    162244 7rq9:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 34707295
    162245 7rq9:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 34707295
    162246 7rq9:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 34707295
    162247 7rq9:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 34707295
    162248 7rq9:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 34707295
    162249 7rq9:1Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 34707295
    162250 7rq9:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    162251 7rq9:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    162252 7rq9:1k (2.6) BS02 MG ? GO:0003735 ... P80376 34707295
    162253 7rq9:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    162254 7rq9:1m (2.6) BS04 MG ? GO:0000049 ... P80377 34707295
    162255 7rq9:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 34707295
    162256 7rq9:1t (2.6) BS02 MG ? GO:0003723 ... P80380 34707295
    162257 7rq9:20 (2.6) BS04 MG ? GO:0003735 ... P60493 34707295
    162258 7rq9:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 34707295
    162259 7rq9:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 34707295
    162260 7rq9:25 (2.6) BS02 MG ? GO:0003735 ... P80339 34707295
    162261 7rq9:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 34707295
    162262 7rq9:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 34707295
    162263 7rq9:27 (2.6) BS02 MG ? GO:0003735 ... P80340 34707295
    162264 7rq9:27 (2.6) BS03 MG ? GO:0003735 ... P80340 34707295
    162265 7rq9:28 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 34707295
    162266 7rq9:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 34707295
    162267 7rq9:2D (2.6) BS03 MG ? GO:0002181 ... P60405 34707295
    162268 7rq9:2D (2.6) BS04 MG ? GO:0002181 ... P60405 34707295
    162269 7rq9:2D (2.6) BS05 MG ? GO:0002181 ... P60405 34707295
    162270 7rq9:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 34707295
    162271 7rq9:2E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 34707295
    162272 7rq9:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 34707295
    162273 7rq9:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 34707295
    162274 7rq9:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 34707295
    162275 7rq9:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 34707295
    162276 7rq9:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 34707295
    162277 7rq9:2T (2.6) BS03 MG ? GO:0003735 ... P60490 34707295
    162278 7rq9:2U (2.6) BS02 MG ? GO:0000027 ... P60491 34707295
    162279 7rq9:2V (2.6) BS02 MG ? GO:0003723 ... P60492 34707295
    162280 7rq9:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 34707295
    162281 7rq9:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 34707295
    162282 7rq9:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 34707295
    162283 7rq9:2Z (2.6) BS02 MG ? GO:0003723 ... Q5SHZ1 34707295
    162284 7rq9:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 34707295
    162285 7rq9:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 34707295
    162286 7rq9:2j (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 34707295
    162287 7rq9:2k (2.6) BS02 MG ? GO:0003735 ... P80376 34707295
    162288 7rq9:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 34707295
    162289 7rq9:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 34707295
    162290 7rq9:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 34707295
    162291 7rq9:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 34707295
    162292 7rq9:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 34707295
    162293 7rq9:2t (2.6) BS02 MG ? GO:0003723 ... P80380 34707295
    162294 7rqa:10 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    162295 7rqa:10 (2.4) BS04 MG ? GO:0003735 ... P60493 35165455
    162296 7rqa:10 (2.4) BS05 MG ? GO:0003735 ... P60493 35165455
    162297 7rqa:11 (2.4) BS02 MG ? GO:0003735 ... P60494 35165455
    162298 7rqa:13 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162299 7rqa:13 (2.4) BS04 MG ? GO:0003735 ... Q5SHQ6 35165455
    162300 7rqa:14 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162301 7rqa:15 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    162302 7rqa:15 (2.4) BS03 MG ? GO:0003735 ... P80339 35165455
    162303 7rqa:15 (2.4) BS04 ZN ? GO:0003735 ... P80339 35165455
    162304 7rqa:16 (2.4) BS02 ZN ? GO:0000049 ... P35871 35165455
    162305 7rqa:17 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    162306 7rqa:17 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    162307 7rqa:18 (2.4) BS02 MG ? GO:0003735 ... Q5SKU1 35165455
    162308 7rqa:18 (2.4) BS03 MG ? GO:0003735 ... Q5SKU1 35165455
    162309 7rqa:19 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162310 7rqa:1D (2.4) BS02 MG ? GO:0002181 ... P60405 35165455
    162311 7rqa:1D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    162312 7rqa:1D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    162313 7rqa:1D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    162314 7rqa:1D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    162315 7rqa:1D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    162316 7rqa:1D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    162317 7rqa:1D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    162318 7rqa:1D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    162319 7rqa:1D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    162320 7rqa:1D (2.4) BS12 MG ? GO:0002181 ... P60405 35165455
    162321 7rqa:1D (2.4) BS13 MG ? GO:0002181 ... P60405 35165455
    162322 7rqa:1D (2.4) BS14 MG ? GO:0002181 ... P60405 35165455
    162323 7rqa:1E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162324 7rqa:1E (2.4) BS03 MG ? GO:0003735 ... Q5SHN8 35165455
    162325 7rqa:1E (2.4) BS04 MG ? GO:0003735 ... Q5SHN8 35165455
    162326 7rqa:1E (2.4) BS05 MG ? GO:0003735 ... Q5SHN8 35165455
    162327 7rqa:1F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162328 7rqa:1F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162329 7rqa:1F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    162330 7rqa:1F (2.4) BS05 MG ? GO:0003735 ... Q5SHN9 35165455
    162331 7rqa:1F (2.4) BS06 MG ? GO:0003735 ... Q5SHN9 35165455
    162332 7rqa:1F (2.4) BS07 MG ? GO:0003735 ... Q5SHN9 35165455
    162333 7rqa:1F (2.4) BS08 MG ? GO:0003735 ... Q5SHN9 35165455
    162334 7rqa:1F (2.4) BS09 MG ? GO:0003735 ... Q5SHN9 35165455
    162335 7rqa:1F (2.4) BS10 MG ? GO:0003735 ... Q5SHN9 35165455
    162336 7rqa:1F (2.4) BS11 MG ? GO:0003735 ... Q5SHN9 35165455
    162337 7rqa:1F (2.4) BS12 MG ? GO:0003735 ... Q5SHN9 35165455
    162338 7rqa:1F (2.4) BS13 MG ? GO:0003735 ... Q5SHN9 35165455
    162339 7rqa:1F (2.4) BS14 MG ? GO:0003735 ... Q5SHN9 35165455
    162340 7rqa:1F (2.4) BS15 MG ? GO:0003735 ... Q5SHN9 35165455
    162341 7rqa:1F (2.4) BS16 MG ? GO:0003735 ... Q5SHN9 35165455
    162342 7rqa:1G (2.4) BS03 MG ? GO:0000049 ... Q5SHQ0 35165455
    162343 7rqa:1G (2.4) BS04 MG ? GO:0000049 ... Q5SHQ0 35165455
    162344 7rqa:1N (2.4) BS02 MG ? GO:0003729 ... P60488 35165455
    162345 7rqa:1N (2.4) BS03 MG ? GO:0003729 ... P60488 35165455
    162346 7rqa:1P (2.4) BS02 MG ? GO:0003735 ... Q5SHQ7 35165455
    162347 7rqa:1P (2.4) BS03 MG ? GO:0003735 ... Q5SHQ7 35165455
    162348 7rqa:1P (2.4) BS04 MG ? GO:0003735 ... Q5SHQ7 35165455
    162349 7rqa:1Q (2.4) BS03 MG ? GO:0000049 ... P60489 35165455
    162350 7rqa:1Q (2.4) BS04 MG ? GO:0000049 ... P60489 35165455
    162351 7rqa:1Q (2.4) BS05 MG ? GO:0000049 ... P60489 35165455
    162352 7rqa:1Q (2.4) BS06 MG ? GO:0000049 ... P60489 35165455
    162353 7rqa:1Q (2.4) BS07 MG ? GO:0000049 ... P60489 35165455
    162354 7rqa:1R (2.4) BS02 MG ? GO:0003735 ... Q9Z9H5 35165455
    162355 7rqa:1R (2.4) BS03 MG ? GO:0003735 ... Q9Z9H5 35165455
    162356 7rqa:1R (2.4) BS04 MG ? GO:0003735 ... Q9Z9H5 35165455
    162357 7rqa:1U (2.4) BS02 MG ? GO:0000027 ... P60491 35165455
    162358 7rqa:1U (2.4) BS03 MG ? GO:0000027 ... P60491 35165455
    162359 7rqa:1U (2.4) BS04 MG ? GO:0000027 ... P60491 35165455
    162360 7rqa:1U (2.4) BS05 MG ? GO:0000027 ... P60491 35165455
    162361 7rqa:1U (2.4) BS06 MG ? GO:0000027 ... P60491 35165455
    162362 7rqa:1V (2.4) BS02 MG ? GO:0003723 ... P60492 35165455
    162363 7rqa:1V (2.4) BS03 MG ? GO:0003723 ... P60492 35165455
    162364 7rqa:1V (2.4) BS04 MG ? GO:0003723 ... P60492 35165455
    162365 7rqa:1W (2.4) BS02 MG ? GO:0003735 ... Q5SHP3 35165455
    162366 7rqa:1Y (2.4) BS02 ZN ? GO:0003723 ... Q5SHP9 35165455
    162367 7rqa:1b (2.4) BS02 MG ? GO:0003735 ... P80371 35165455
    162368 7rqa:1e (2.4) BS02 MG ? GO:0003723 ... Q5SHQ5 35165455
    162369 7rqa:1k (2.4) BS02 MG ? GO:0003735 ... P80376 35165455
    162370 7rqa:1l (2.4) BS02 MG ? GO:0000049 ... Q5SHN3 35165455
    162371 7rqa:1m (2.4) BS02 MG ? GO:0000049 ... P80377 35165455
    162372 7rqa:1n (2.4) BS02 MG ? GO:0003735 ... P0DOY6 35165455
    162373 7rqa:1n (2.4) BS03 MG ? GO:0003735 ... P0DOY6 35165455
    162374 7rqa:1n (2.4) BS04 ZN ? GO:0003735 ... P0DOY6 35165455
    162375 7rqa:1t (2.4) BS02 MG ? GO:0003723 ... P80380 35165455
    162376 7rqa:1y (2.4) BS02 MG ? GO:0005515 ... P0AD49 35165455
    162377 7rqa:1y (2.4) BS03 MG ? GO:0005515 ... P0AD49 35165455
    162378 7rqa:20 (2.4) BS03 MG ? GO:0003735 ... P60493 35165455
    162379 7rqa:23 (2.4) BS03 MG ? GO:0003735 ... Q5SHQ6 35165455
    162380 7rqa:24 (2.4) BS02 ZN ? GO:0003735 ... Q5SJE1 35165455
    162381 7rqa:25 (2.4) BS02 MG ? GO:0003735 ... P80339 35165455
    162382 7rqa:25 (2.4) BS03 ZN ? GO:0003735 ... P80339 35165455
    162383 7rqa:26 (2.4) BS02 MG ? GO:0000049 ... P35871 35165455
    162384 7rqa:26 (2.4) BS03 ZN ? GO:0000049 ... P35871 35165455
    162385 7rqa:27 (2.4) BS02 MG ? GO:0003735 ... P80340 35165455
    162386 7rqa:27 (2.4) BS03 MG ? GO:0003735 ... P80340 35165455
    162387 7rqa:29 (2.4) BS02 ZN ? GO:0003735 ... Q5SHR2 35165455
    162388 7rqa:2D (2.4) BS03 MG ? GO:0002181 ... P60405 35165455
    162389 7rqa:2D (2.4) BS04 MG ? GO:0002181 ... P60405 35165455
    162390 7rqa:2D (2.4) BS05 MG ? GO:0002181 ... P60405 35165455
    162391 7rqa:2D (2.4) BS06 MG ? GO:0002181 ... P60405 35165455
    162392 7rqa:2D (2.4) BS07 MG ? GO:0002181 ... P60405 35165455
    162393 7rqa:2D (2.4) BS08 MG ? GO:0002181 ... P60405 35165455
    162394 7rqa:2D (2.4) BS09 MG ? GO:0002181 ... P60405 35165455
    162395 7rqa:2D (2.4) BS10 MG ? GO:0002181 ... P60405 35165455
    162396 7rqa:2D (2.4) BS11 MG ? GO:0002181 ... P60405 35165455
    162397 7rqa:2E (2.4) BS02 MG ? GO:0003735 ... Q5SHN8 35165455
    162398 7rqa:2F (2.4) BS02 MG ? GO:0003735 ... Q5SHN9 35165455
    162399 7rqa:2F (2.4) BS03 MG ? GO:0003735 ... Q5SHN9 35165455
    162400 7rqa:2F (2.4) BS04 MG ? GO:0003735 ... Q5SHN9 35165455
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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