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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    161801 7rgf:A (2.4) BS08 CA ? GO:0005509 ... Q91XX0 35253643
    161802 7rgf:A (2.4) BS09 CA ? GO:0005509 ... Q91XX0 35253643
    161803 7rgf:A (2.4) BS10 CA ? GO:0005509 ... Q91XX0 35253643
    161804 7rgf:B (2.4) BS02 CA ? GO:0005509 ... Q91XX0 35253643
    161805 7rgf:B (2.4) BS03 CA ? GO:0005509 ... Q91XX0 35253643
    161806 7rgf:B (2.4) BS04 CA ? GO:0005509 ... Q91XX0 35253643
    161807 7rgf:B (2.4) BS05 CA ? GO:0005509 ... Q91XX0 35253643
    161808 7rgf:B (2.4) BS06 CA ? GO:0005509 ... Q91XX0 35253643
    161809 7rgf:B (2.4) BS07 CA ? GO:0005509 ... Q91XX0 35253643
    161810 7rgf:B (2.4) BS08 CA ? GO:0005509 ... Q91XX0 35253643
    161811 7rgf:B (2.4) BS09 CA ? GO:0005509 ... Q91XX0 35253643
    161812 7rgf:B (2.4) BS10 CA ? GO:0005509 ... Q91XX0 35253643
    161813 7rgj:B (1.44) BS02 CA 1.5.1.3 GO:0004146 ... P00382 35562546
    161814 7rgn:A (2.2) BS01 ZN 4.1.2.13 GO:0004332 ... A0A2H0ZD48 N/A
    161815 7rh5:K (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161816 7rh5:K (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161817 7rh5:L (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    161818 7rh5:Q (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161819 7rh5:Q (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161820 7rh5:R (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    161821 7rh6:K (3.5) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161822 7rh6:K (3.5) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161823 7rh6:L (3.5) BS01 CU N/A GO:0004129 ... N/A 34590581
    161824 7rh6:Q (3.5) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161825 7rh6:Q (3.5) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161826 7rh6:R (3.5) BS01 CU N/A GO:0004129 ... N/A 34590581
    161827 7rh7:K (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161828 7rh7:K (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161829 7rh7:L (3.0) BS01 CU N/A GO:0004129 ... N/A 34590581
    161830 7rh7:Q (3.0) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161831 7rh7:Q (3.0) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 34590581
    161832 7rh7:R (3.0) BS02 CU N/A GO:0004129 ... N/A 34590581
    161833 7rhq:C (3.53) BS01 ZN 3.1.-.- GO:0007267 ... Q15465 35231446
    161834 7rhq:C (3.53) BS02 CA 3.1.-.- GO:0007267 ... Q15465 35231446
    161835 7rhq:C (3.53) BS03 CA 3.1.-.- GO:0007267 ... Q15465 35231446
    161836 7rhv:A (2.0) BS01 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161837 7rhv:B (2.0) BS01 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161838 7rhw:A (1.9) BS02 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161839 7rhw:B (1.9) BS02 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161840 7ri0:A (2.3) BS01 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161841 7ri0:B (2.3) BS01 MG 4.2.1.11 GO:0000015 ... Q96X30 35247004
    161842 7ri3:A (2.69) BS01 CA ? GO:0005615 ... A0A2A2D7J4 35440624
    161843 7ri3:B (2.69) BS01 CA ? GO:0005615 ... A0A2A2D7J4 35440624
    161844 7ri3:C (2.69) BS01 CA ? GO:0005615 ... A0A2A2D7J4 35440624
    161845 7ri3:D (2.69) BS01 CA ? GO:0005615 ... A0A2A2D7J4 35440624
    161846 7rie:A (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161847 7rie:A (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161848 7rie:B (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161849 7rie:B (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161850 7rie:C (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161851 7rie:C (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161852 7rie:D (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161853 7rie:D (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161854 7rie:E (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161855 7rie:E (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161856 7rie:F (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161857 7rie:F (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161858 7rie:G (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161859 7rie:G (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161860 7rie:H (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161861 7rie:H (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161862 7rie:I (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161863 7rie:I (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161864 7rie:J (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161865 7rie:J (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161866 7rie:K (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161867 7rie:K (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161868 7rie:L (2.49) BS02 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161869 7rie:L (2.49) BS03 ZN 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36097817
    161870 7rim:A (2.9) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161871 7rim:A (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161872 7rim:A (2.9) BS05 MG 2.7.7.6 GO:0000428 ... P04050 35022237
    161873 7rim:B (2.9) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161874 7rim:C (2.9) BS01 ZN ? GO:0000428 ... P16370 35022237
    161875 7rim:I (2.9) BS01 ZN ? GO:0000428 ... P27999 35022237
    161876 7rim:I (2.9) BS02 ZN ? GO:0000428 ... P27999 35022237
    161877 7rim:J (2.9) BS01 ZN ? GO:0000428 ... P22139 35022237
    161878 7rim:L (2.9) BS01 ZN ? GO:0000428 ... P40422 35022237
    161879 7rip:A (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161880 7rip:A (3.3) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161881 7rip:B (3.3) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161882 7rip:C (3.3) BS01 ZN ? GO:0000428 ... P16370 35022237
    161883 7rip:I (3.3) BS01 ZN ? GO:0000428 ... P27999 35022237
    161884 7rip:I (3.3) BS02 ZN ? GO:0000428 ... P27999 35022237
    161885 7rip:J (3.3) BS01 ZN ? GO:0000428 ... P22139 35022237
    161886 7rip:L (3.3) BS01 ZN ? GO:0000428 ... P40422 35022237
    161887 7riq:A (3.0) BS04 MG 2.7.7.6 GO:0000428 ... P04050 35022237
    161888 7riq:A (3.0) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161889 7riq:A (3.0) BS06 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161890 7riq:B (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161891 7riq:C (3.0) BS01 ZN ? GO:0000428 ... P16370 35022237
    161892 7riq:I (3.0) BS01 ZN ? GO:0000428 ... P27999 35022237
    161893 7riq:I (3.0) BS02 ZN ? GO:0000428 ... P27999 35022237
    161894 7riq:J (3.0) BS01 ZN ? GO:0000428 ... P22139 35022237
    161895 7riq:L (3.0) BS01 ZN ? GO:0000428 ... P40422 35022237
    161896 7ris:A (1.72) BS02 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    161897 7riw:A (3.2) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161898 7riw:A (3.2) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161899 7riw:B (3.2) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161900 7riw:C (3.2) BS01 ZN ? GO:0000428 ... P16370 35022237
    161901 7riw:I (3.2) BS01 ZN ? GO:0000428 ... P27999 35022237
    161902 7riw:I (3.2) BS02 ZN ? GO:0000428 ... P27999 35022237
    161903 7riw:J (3.2) BS01 ZN ? GO:0000428 ... P22139 35022237
    161904 7riw:L (3.2) BS01 ZN ? GO:0000428 ... P40422 35022237
    161905 7rix:A (3.4) BS03 MG 2.7.7.6 GO:0000428 ... P04050 35022237
    161906 7rix:A (3.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161907 7rix:A (3.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161908 7rix:B (3.4) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161909 7rix:C (3.4) BS01 ZN ? GO:0000428 ... P16370 35022237
    161910 7rix:I (3.4) BS01 ZN ? GO:0000428 ... P27999 35022237
    161911 7rix:I (3.4) BS02 ZN ? GO:0000428 ... P27999 35022237
    161912 7rix:J (3.4) BS01 ZN ? GO:0000428 ... P22139 35022237
    161913 7rix:L (3.4) BS01 ZN ? GO:0000428 ... P40422 35022237
    161914 7riy:A (3.7) BS03 MG 2.7.7.6 GO:0000428 ... P04050 35022237
    161915 7riy:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161916 7riy:A (3.7) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 35022237
    161917 7riy:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 35022237
    161918 7riy:C (3.7) BS01 ZN ? GO:0000428 ... P16370 35022237
    161919 7riy:I (3.7) BS01 ZN ? GO:0000428 ... P27999 35022237
    161920 7riy:I (3.7) BS02 ZN ? GO:0000428 ... P27999 35022237
    161921 7riy:J (3.7) BS01 ZN ? GO:0000428 ... P22139 35022237
    161922 7riy:L (3.7) BS01 ZN ? GO:0000428 ... P40422 35022237
    161923 7riz:A (1.71) BS02 CA 3.1.1.17 GO:0004341 ... Q6N3R9 36502920
    161924 7rj1:A (2.16) BS02 MG 5.4.99.5 GO:0004106 ... Q59TS4 N/A
    161925 7rj1:C (2.16) BS02 MG 5.4.99.5 GO:0004106 ... Q59TS4 N/A
    161926 7rj9:A (1.7) BS01 CA ? N/A P04004 N/A
    161927 7rj9:B (1.7) BS01 CA ? N/A P04004 N/A
    161928 7rkh:A (2.8) BS03 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161929 7rkh:B (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161930 7rkh:C (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161931 7rkh:D (2.8) BS03 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161932 7rkp:A (2.36) BS03 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    161933 7rkp:A (2.36) BS04 MN 3.1.-.- GO:0003723 ... C3W5S0 36603507
    161934 7rkr:A (1.76) BS03 CA ? GO:0004497 ... A0A2H4A2U9 38085955
    161935 7rkr:A (1.76) BS04 CA ? GO:0004497 ... A0A2H4A2U9 38085955
    161936 7rl0:A (2.8) BS01 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161937 7rl0:B (2.8) BS01 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161938 7rl0:C (2.8) BS02 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161939 7rl0:D (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161940 7rl0:E (2.8) BS01 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161941 7rl0:F (2.8) BS02 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161942 7rl0:G (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161943 7rl0:H (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161944 7rl0:W (2.8) BS01 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161945 7rl0:X (2.8) BS02 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161946 7rl0:Y (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161947 7rl0:Z (2.8) BS04 MG 6.3.4.2 GO:0003883 ... N/A 34734801
    161948 7rl7:A (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161949 7rl7:A (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161950 7rl7:B (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161951 7rl7:B (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161952 7rl7:C (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161953 7rl7:C (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161954 7rl7:D (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161955 7rl7:D (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161956 7rl7:E (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161957 7rl7:E (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161958 7rl7:F (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161959 7rl7:F (3.0) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161960 7rlf:A (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161961 7rlf:A (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161962 7rlf:B (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161963 7rlf:B (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161964 7rlf:C (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161965 7rlf:C (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161966 7rlf:D (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161967 7rlf:D (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161968 7rlf:E (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161969 7rlf:E (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161970 7rlf:F (3.1) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161971 7rlf:F (3.1) BS04 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161972 7rlh:A (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161973 7rlh:B (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161974 7rlh:C (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161975 7rlh:D (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161976 7rlh:E (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161977 7rlh:F (3.0) BS03 MG 3.6.4.6 GO:0000502 ... P55072 34520757
    161978 7rlk:A (2.69) BS01 ZN ? GO:0005179 ... P42204 N/A
    161979 7rlk:C (2.69) BS01 ZN ? GO:0005179 ... P42204 N/A
    161980 7rlk:D (2.69) BS01 ZN ? GO:0005179 ... P42204 N/A
    161981 7rlk:E (2.69) BS01 ZN ? GO:0005179 ... P42204 N/A
    161982 7rlk:F (2.69) BS01 ZN ? GO:0005179 ... P42204 N/A
    161983 7rm6:A (1.43) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 35513508
    161984 7rm6:A (1.43) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 35513508
    161985 7rm6:B (1.43) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 35513508
    161986 7rm6:B (1.43) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 35513508
    161987 7rm7:A (1.025) BS02 MG ? GO:0004371 ... Q2FZ58 N/A
    161988 7rm7:A (1.025) BS03 MG ? GO:0004371 ... Q2FZ58 N/A
    161989 7rn5:B (2.28) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 33488970
    161990 7rni:B (1.978) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 33488970
    161991 7rny:A (1.29) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 34958217
    161992 7rnz:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 34958217
    161993 7ron:A (1.68) BS01 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161994 7ron:A (1.68) BS02 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161995 7ron:A (1.68) BS03 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161996 7ron:A (1.68) BS04 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161997 7ron:A (1.68) BS05 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161998 7ron:A (1.68) BS06 CA ? GO:0046872 ... A0A1Y0K711 35212625
    161999 7ron:A (1.68) BS07 CA ? GO:0046872 ... A0A1Y0K711 35212625
    162000 7ron:A (1.68) BS08 CA ? GO:0046872 ... A0A1Y0K711 35212625
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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