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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    161001 7qp6:k (4.7) BS02 ZN ? GO:0002181 ... P62979 35489072
    161002 7qp7:Q (3.7) BS03 ZN ? GO:0002181 ... P62854 35489072
    161003 7qp7:k (3.7) BS02 ZN ? GO:0002181 ... P62979 35489072
    161004 7qp8:A (1.7) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    161005 7qp8:A (1.7) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    161006 7qp8:A (1.7) BS03 MG ? GO:0004035 ... Q93P54 36194497
    161007 7qp8:A (1.7) BS04 MG ? GO:0004035 ... Q93P54 36194497
    161008 7qp8:B (1.7) BS01 ZN ? GO:0004035 ... Q93P54 36194497
    161009 7qp8:B (1.7) BS02 ZN ? GO:0004035 ... Q93P54 36194497
    161010 7qp8:B (1.7) BS03 MG ? GO:0004035 ... Q93P54 36194497
    161011 7qp8:B (1.7) BS04 MG ? GO:0004035 ... Q93P54 36194497
    161012 7qpf:A (1.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161013 7qpf:B (1.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161014 7qpi:A (2.5) BS03 MG ? N/A S4R4S2 35302785
    161015 7qpl:A (1.77) BS01 MG 3.1.3.3 GO:0006564 ... Q8YI30 N/A
    161016 7qpm:A (2.4) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161017 7qpm:B (2.4) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161018 7qpq:A (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161019 7qpq:B (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161020 7qpr:A (2.513) BS01 MN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161021 7qpr:A (2.513) BS02 ZN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161022 7qpr:B (2.513) BS01 MN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161023 7qpr:B (2.513) BS02 ZN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161024 7qpr:C (2.513) BS01 MN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161025 7qpr:C (2.513) BS02 ZN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161026 7qpr:D (2.513) BS01 MN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161027 7qpr:D (2.513) BS02 ZN 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161028 7qpr:D (2.513) BS04 MG 2.7.6.5 GO:0000166 ... V5V8V7 N/A
    161029 7qpv:A (2.3) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161030 7qpv:B (2.3) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161031 7qq2:A (2.1) BS01 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    161032 7qq2:A (2.1) BS02 CU 1.7.2.1 GO:0005507 ... I6NAW4 N/A
    161033 7qq3:m (2.1) BS02 ZN ? GO:0002181 ... P0A7Q6 36603206
    161034 7qq4:A (2.45) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161035 7qq4:B (2.45) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 N/A
    161036 7qqd:A (2.7) BS01 ZN ? GO:0003700 ... Q14938 N/A
    161037 7qqd:B (2.7) BS02 ZN ? GO:0003700 ... Q14938 N/A
    161038 7qqd:B (2.7) BS03 ZN ? GO:0003700 ... Q14938 N/A
    161039 7qqe:A (3.5) BS01 ZN ? GO:0003700 ... Q14938 N/A
    161040 7qqe:A (3.5) BS02 ZN ? GO:0003700 ... Q14938 N/A
    161041 7qql:A (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161042 7qql:A (2.44) BS03 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161043 7qql:A (2.44) BS04 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161044 7qql:A (2.44) BS05 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161045 7qql:B (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161046 7qql:B (2.44) BS03 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161047 7qql:B (2.44) BS04 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161048 7qql:B (2.44) BS05 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161049 7qql:B (2.44) BS06 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161050 7qql:C (2.44) BS02 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161051 7qql:C (2.44) BS03 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161052 7qql:C (2.44) BS04 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161053 7qql:C (2.44) BS05 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161054 7qql:C (2.44) BS06 CA ? GO:0001525 ... P07355
    Q9NY99    		 35362473
    161055 7qqm:A (1.6) BS01 CA ? GO:0001525 ... P07355
    Q96NW7    		 35362473
    161056 7qqm:A (1.6) BS02 CA ? GO:0001525 ... P07355
    Q96NW7    		 35362473
    161057 7qqm:A (1.6) BS03 CA ? GO:0001525 ... P07355
    Q96NW7    		 35362473
    161058 7qqm:A (1.6) BS04 CA ? GO:0001525 ... P07355
    Q96NW7    		 35362473
    161059 7qqn:A (2.45) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161060 7qqn:A (2.45) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161061 7qqn:A (2.45) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161062 7qqn:A (2.45) BS05 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161063 7qqn:C (2.45) BS02 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161064 7qqn:C (2.45) BS03 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161065 7qqn:C (2.45) BS04 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161066 7qqn:C (2.45) BS05 CA ? GO:0001525 ... P07355
    Q9NSN8    		 35362473
    161067 7qr6:A (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    161068 7qr6:B (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    161069 7qr6:C (2.9) BS01 FE 1.13.11.- GO:0010436 ... Q2GA76 35687874
    161070 7qrk:AAA (1.428) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    161071 7qsc:B (1.91) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    161072 7qsc:D (1.91) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    161073 7qsd:R (3.1) BS01 ZN ? GO:0005739 ... P23934 36701435
    161074 7qse:AAA (1.428) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    161075 7qsi:AAA (1.304) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 35296197
    161076 7qsk:R (2.84) BS01 ZN ? GO:0005739 ... P23934 35589726
    161077 7qsl:R (2.76) BS01 ZN ? GO:0005739 ... P23934 35589726
    161078 7qsm:R (2.3) BS01 ZN ? GO:0005739 ... P23934 35589726
    161079 7qsn:R (2.81) BS01 ZN ? GO:0005739 ... P23934 35589726
    161080 7qso:R (3.02) BS01 ZN ? GO:0005739 ... P23934 35589726
    161081 7qsv:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161082 7qsv:B (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161083 7qsv:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161084 7qsv:D (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161085 7qsv:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161086 7qsv:F (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161087 7qsv:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161088 7qsv:H (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161089 7qsw:A (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    161090 7qsw:C (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    161091 7qsw:E (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    161092 7qsw:G (1.8) BS02 MG N/A GO:0000287 ... N/A 36227987
    161093 7qsx:A (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    161094 7qsx:B (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    161095 7qsx:C (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    161096 7qsx:D (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    161097 7qsx:E (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    161098 7qsx:F (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    161099 7qsx:G (2.7) BS02 MG N/A GO:0000287 ... N/A 36227987
    161100 7qsx:H (2.7) BS03 MG N/A GO:0000287 ... N/A 36227987
    161101 7qsy:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161102 7qsy:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161103 7qsy:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161104 7qsy:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161105 7qsz:A (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    161106 7qsz:B (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    161107 7qsz:C (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    161108 7qsz:D (2.25) BS02 MG N/A GO:0000287 ... N/A 36227987
    161109 7qt1:A (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161110 7qt1:C (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161111 7qt1:E (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161112 7qt1:G (2.1) BS02 MG N/A GO:0000287 ... N/A 36227987
    161113 7qta:A (1.06) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161114 7qta:A (1.06) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161115 7qta:A (1.06) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161116 7qta:B (1.06) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161117 7qta:B (1.06) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161118 7qta:B (1.06) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161119 7qtb:A (1.04) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161120 7qtb:A (1.04) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161121 7qtb:A (1.04) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161122 7qtb:A (1.04) BS05 CA 3.1.30.1 GO:0003676 ... P24021 36189740
    161123 7qtb:B (1.04) BS01 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161124 7qtb:B (1.04) BS02 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161125 7qtb:B (1.04) BS03 ZN 3.1.30.1 GO:0003676 ... P24021 36189740
    161126 7qtb:B (1.04) BS05 CA 3.1.30.1 GO:0003676 ... P24021 36189740
    161127 7qtd:A (1.75) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161128 7qtd:B (1.75) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161129 7qtd:C (1.75) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161130 7qtd:D (1.75) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161131 7qte:A (1.81) BS01 CO ? GO:0005737 ... Q2I752 N/A
    161132 7qte:B (1.81) BS01 CO ? GO:0005737 ... Q2I752 N/A
    161133 7qtg:A (2.695) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161134 7qtg:B (2.695) BS01 FE2 ? GO:0005737 ... Q2I752 N/A
    161135 7qth:A (1.9) BS11 CA ? N/A Q8EG34 36645302
    161136 7qth:A (1.9) BS12 CA ? N/A Q8EG34 36645302
    161137 7qth:A (1.9) BS13 CA ? N/A Q8EG34 36645302
    161138 7qth:A (1.9) BS14 CA ? N/A Q8EG34 36645302
    161139 7qtl:B (2.48) BS05 MG 2.7.7.48 GO:0000166 ... M9TLW3 36596301
    161140 7qtm:B (2.25) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    161141 7qtm:I (2.25) BS03 MG 3.6.5.2 GO:0000902 ... P61586 N/A
    161142 7qtt:D (3.1) BS02 ZN ? GO:0000398 ... Q7RTV0 37165190
    161143 7qtt:D (3.1) BS03 ZN ? GO:0000398 ... Q7RTV0 37165190
    161144 7qtt:I (3.1) BS05 ZN ? GO:0000245 ... Q15428 37165190
    161145 7qtt:J (3.1) BS03 ZN ? GO:0000375 ... Q12874 37165190
    161146 7qtt:T (3.1) BS02 ZN ? GO:0000398 ... P41223 37165190
    161147 7qtt:T (3.1) BS03 ZN ? GO:0000398 ... P41223 37165190
    161148 7qtt:T (3.1) BS04 ZN ? GO:0000398 ... P41223 37165190
    161149 7qtt:U (3.1) BS03 ZN ? GO:0000398 ... Q9NW64 37165190
    161150 7qtt:U (3.1) BS04 ZN ? GO:0000398 ... Q9NW64 37165190
    161151 7qtt:U (3.1) BS05 ZN ? GO:0000398 ... Q9NW64 37165190
    161152 7qtt:Z (3.1) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 37165190
    161153 7qtv:A (4.05) BS05 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    161154 7qtv:A (4.05) BS06 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    161155 7qtv:C (4.05) BS04 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    161156 7qtv:C (4.05) BS05 MG 7.2.2.13 GO:0000166 ... P05024 35926706
    161157 7qul:A (1.8) BS01 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161158 7qul:A (1.8) BS02 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161159 7quv:A (1.85) BS02 CA ? GO:0002523 ... P05109 37198182
    161160 7quv:B (1.85) BS02 CA ? GO:0002523 ... P06702 37198182
    161161 7quv:B (1.85) BS03 CA ? GO:0002523 ... P06702 37198182
    161162 7qux:A (1.48) BS03 MG 2.7.11.1 GO:0004672 ... P68400 35343996
    161163 7quy:A (2.6) BS02 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161164 7quy:A (2.6) BS03 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161165 7quy:B (2.6) BS02 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161166 7quy:B (2.6) BS03 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161167 7quy:C (2.6) BS02 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161168 7quy:C (2.6) BS03 ZN 1.1.1.368 GO:0008270 ... O87871 35557486
    161169 7qv8:A (2.15) BS02 MG ? GO:0003677 ... A4I3C9 35502837
    161170 7qvd:AAA (1.7) BS01 CA N/A N/A N/A N/A
    161171 7qvi:A (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161172 7qvi:B (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161173 7qvi:C (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161174 7qvi:D (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    161175 7qvi:E (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161176 7qvi:F (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161177 7qvi:G (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161178 7qvi:H (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    161179 7qvi:I (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161180 7qvi:J (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161181 7qvi:K (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161182 7qvi:L (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161183 7qvi:M (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161184 7qvi:N (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    161185 7qvi:O (3.0) BS02 MG N/A GO:0000287 ... N/A 36227987
    161186 7qvi:P (3.0) BS03 MG N/A GO:0000287 ... N/A 36227987
    161187 7qvw:AAA (1.922) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161188 7qvw:BBB (1.922) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161189 7qvw:CCC (1.922) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161190 7qvw:DDD (1.922) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161191 7qw3:AAA (1.78) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161192 7qw3:BBB (1.78) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161193 7qw3:CCC (1.78) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161194 7qw3:DDD (1.78) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161195 7qwi:AAA (2.15) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161196 7qwi:BBB (2.15) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161197 7qwi:CCC (2.15) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161198 7qwi:DDD (2.15) BS01 CA 1.11.1.18 GO:0004601 ... O81959 N/A
    161199 7qwj:A (1.65) BS01 MN 3.1.3.16 GO:0000076 ... P32598 N/A
    161200 7qwj:A (1.65) BS02 MN 3.1.3.16 GO:0000076 ... P32598 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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