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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    159401 7pf1:I (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159402 7pf1:J (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159403 7pf1:J (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159404 7pf1:K (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159405 7pf1:K (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159406 7pf1:L (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159407 7pf1:L (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159408 7pf1:M (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159409 7pf1:M (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159410 7pf1:N (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159411 7pf1:N (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159412 7pf1:O (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159413 7pf1:O (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159414 7pf1:P (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159415 7pf1:P (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159416 7pf1:Q (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159417 7pf1:Q (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159418 7pf1:R (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159419 7pf1:R (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159420 7pf1:S (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159421 7pf1:S (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159422 7pf1:T (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159423 7pf1:T (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159424 7pf1:U (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159425 7pf1:U (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159426 7pf1:V (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159427 7pf1:V (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159428 7pf1:W (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159429 7pf1:W (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159430 7pf1:X (2.1) BS01 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159431 7pf1:X (2.1) BS02 MG 1.16.3.1 GO:0004322 ... P02794 35017666
    159432 7pfb:A (1.7) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159433 7pfb:A (1.7) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159434 7pfg:A (1.8) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159435 7pfg:A (1.8) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159436 7pfh:A (1.5) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159437 7pfh:A (1.5) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159438 7pfi:A (1.7) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159439 7pfi:A (1.7) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159440 7pfj:A (1.65) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159441 7pfj:A (1.65) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159442 7pfk:A (1.55) BS01 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159443 7pfk:A (1.55) BS02 FE 1.16.3.2 GO:0005737 ... Q0I9X8 34825885
    159444 7pfo:2 (3.2) BS02 MG 3.6.4.12 GO:0000727 ... P49736 34694004
    159445 7pfo:3 (3.2) BS03 MG 3.6.4.12 GO:0000727 ... P25205 34694004
    159446 7pfo:4 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P33991 34694004
    159447 7pfo:5 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P33992 34694004
    159448 7pfo:5 (3.2) BS05 MG 3.6.4.12 GO:0000727 ... P33992 34694004
    159449 7pfo:6 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... Q14566 34694004
    159450 7pfo:7 (3.2) BS03 ZN 3.6.4.12 GO:0000727 ... P33993 34694004
    159451 7pfo:B (3.2) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0000082 ... Q07864 34694004
    159452 7pfr:A (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159453 7pfr:A (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159454 7pfr:A (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159455 7pfr:B (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159456 7pfr:B (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159457 7pfr:B (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159458 7pfr:B (1.75) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159459 7pfr:C (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159460 7pfr:C (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159461 7pfr:C (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159462 7pfr:D (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159463 7pfr:D (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159464 7pfr:D (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159465 7pfr:D (1.75) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159466 7pfr:E (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159467 7pfr:E (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159468 7pfr:E (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159469 7pfr:E (1.75) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159470 7pfr:F (1.75) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159471 7pfr:F (1.75) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159472 7pfr:F (1.75) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159473 7pfr:F (1.75) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 35008493
    159474 7pfs:A (2.7) BS02 ZN 3.4.11.- GO:0002250 ... Q6P179 35178178
    159475 7pfs:B (2.7) BS02 ZN 3.4.11.- GO:0002250 ... Q6P179 35178178
    159476 7pgi:E (3.638) BS01 MG ? GO:0005216 ... Q0VNY2 35655098
    159477 7pgn:B (2.4) BS03 CA ? N/A Q96QV1 34887403
    159478 7pgq:F (3.5) BS01 ZN ? GO:0000165 ... P21359 34707296
    159479 7pgr:F (4.0) BS01 ZN ? GO:0000165 ... P21359 34707296
    159480 7pgr:N (4.0) BS01 ZN ? GO:0000165 ... P21359 34707296
    159481 7pgs:F (3.4) BS01 ZN ? GO:0000165 ... P21359 34707296
    159482 7pgt:F (4.8) BS01 ZN ? GO:0000165 ... P21359 34707296
    159483 7pgu:F (3.3) BS01 ZN ? GO:0000165 ... P21359 34707296
    159484 7pgu:N (3.3) BS01 ZN ? GO:0000165 ... P21359 34707296
    159485 7pgx:AAA (1.001) BS01 CA 2.7.11.1 N/A O49003 35552382
    159486 7pgy:AAA (1.09) BS01 CA 2.7.11.1 N/A O49003 35552382
    159487 7pgz:AAA (0.9) BS01 MG 2.7.11.1 N/A O49003 35552382
    159488 7ph1:E (1.18) BS01 CA 3.4.21.4 GO:0004175 ... P00760 36409613
    159489 7ph3:A (2.8) BS02 MG 7.5.2.6 GO:0005524 ... P60752 36223470
    159490 7ph3:B (2.8) BS03 MG 7.5.2.6 GO:0005524 ... P60752 36223470
    159491 7ph4:A (2.8) BS02 MG 7.5.2.6 GO:0005524 ... P60752 36223470
    159492 7ph4:B (2.8) BS03 MG 7.5.2.6 GO:0005524 ... P60752 36223470
    159493 7phi:B (3.1) BS01 ZN ? GO:0001508 ... P48547 35840580
    159494 7phi:C (3.1) BS01 ZN ? GO:0001508 ... P48547 35840580
    159495 7phi:D (3.1) BS01 ZN ? GO:0001508 ... P48547 35840580
    159496 7phj:A (2.45) BS01 ZN 3.5.1.108 GO:0005506 ... P0A725 N/A
    159497 7phn:A (1.9) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159498 7phw:A (2.793) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    159499 7phw:B (2.793) BS01 CA N/A N/A N/A 35177602
    159500 7phw:B (2.793) BS02 CA N/A N/A N/A 35177602
    159501 7phw:D (2.793) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    159502 7phw:E (2.793) BS01 CA N/A N/A N/A 35177602
    159503 7phw:E (2.793) BS02 CA N/A N/A N/A 35177602
    159504 7pi0:A (2.43) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159505 7pi0:D (2.43) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159506 7pi0:a (2.43) BS07 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159507 7pi0:d (2.43) BS05 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159508 7pi1:BBB (1.729) BS02 MG 2.6.1.85 GO:0000162 ... P28820 N/A
    159509 7pi1:CCC (1.729) BS02 MG 2.6.1.85 GO:0000162 ... P28820 N/A
    159510 7pi1:DDD (1.729) BS02 MG 2.6.1.85 GO:0000162 ... P28820 N/A
    159511 7pi3:F (3.269) BS01 CA N/A N/A N/A 35177602
    159512 7pi3:F (3.269) BS02 CA N/A N/A N/A 35177602
    159513 7pi3:H (3.269) BS01 CA ? GO:0004308 ... Q8IFM8 35177602
    159514 7pi3:M (3.269) BS01 CA N/A N/A N/A 35177602
    159515 7pi3:M (3.269) BS02 CA N/A N/A N/A 35177602
    159516 7pi3:T (3.269) BS01 CA N/A N/A N/A 35177602
    159517 7pi3:T (3.269) BS02 CA N/A N/A N/A 35177602
    159518 7pi3:a (3.269) BS01 CA N/A N/A N/A 35177602
    159519 7pi3:a (3.269) BS02 CA N/A N/A N/A 35177602
    159520 7pi4:AAA (2.24) BS02 CA ? N/A P40337 34416073
    159521 7pi5:A (2.78) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159522 7pi5:D (2.78) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159523 7pi5:a (2.78) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159524 7pi5:d (2.78) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159525 7pil:L (2.5) BS09 FE ? GO:0009772 ... Q3J1A5 34590677
    159526 7pil:M (2.5) BS08 FE ? GO:0009772 ... Q3J1A6 34590677
    159527 7pim:A (4.6) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    159528 7pim:B (4.6) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    159529 7pim:D (4.6) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    159530 7pim:F (4.6) BS03 FE 1.14.16.2 GO:0004497 ... P07101 35013193
    159531 7pin:A (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159532 7pin:A1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159533 7pin:D (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159534 7pin:D1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159535 7pin:a (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159536 7pin:a1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159537 7pin:d (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159538 7pin:d1 (3.6) BS02 FE2 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    159539 7piu:R (2.58) BS02 CA ? GO:0002024 ... P32245 34561620
    159540 7piv:R (2.86) BS02 CA ? GO:0002024 ... P32245 34561620
    159541 7piw:A (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159542 7piw:A1 (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159543 7piw:D (4.0) BS01 FE2 1.10.3.9 GO:0005506 ... D0FXW8 36799903
    159544 7piw:D1 (4.0) BS01 FE2 1.10.3.9 GO:0005506 ... D0FXW8 36799903
    159545 7piw:a (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159546 7piw:a1 (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FY08 36799903
    159547 7piw:d (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FXW8 36799903
    159548 7piw:d1 (4.0) BS02 FE2 1.10.3.9 GO:0005506 ... D0FXW8 36799903
    159549 7pj2:A (1.8) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159550 7pj3:AAA (1.43) BS01 CA 3.2.1.96 GO:0004040 ... P59206 37418323
    159551 7pj4:AAA (1.25) BS01 CA 3.2.1.96 GO:0004040 ... P59206 37418323
    159552 7pj5:AAA (1.55) BS01 CA 3.2.1.96 GO:0004040 ... P59206 37418323
    159553 7pj6:AAA (1.3) BS03 CA 3.2.1.96 GO:0004040 ... P59206 37418323
    159554 7pjd:A (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159555 7pjd:A (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159556 7pjd:A (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159557 7pjd:B (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159558 7pjd:B (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159559 7pjd:B (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159560 7pjd:C (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159561 7pjd:C (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159562 7pjd:C (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159563 7pjd:D (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159564 7pjd:D (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159565 7pjd:D (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159566 7pjd:E (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159567 7pjd:E (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159568 7pjd:E (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159569 7pjd:F (1.99) BS01 CA ? GO:0005509 ... Q6URH4 34866602
    159570 7pjd:F (1.99) BS02 CA ? GO:0005509 ... Q6URH4 34866602
    159571 7pjd:F (1.99) BS03 CA ? GO:0005509 ... Q6URH4 34866602
    159572 7pjg:A (2.04) BS01 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    159573 7pjk:A (1.99) BS01 ZN ? GO:0046872 ... A4TVL0 35220840
    159574 7pjk:B (1.99) BS01 ZN ? GO:0046872 ... A4TVL0 35220840
    159575 7pjk:C (1.99) BS01 ZN ? GO:0046872 ... A4TVL0 35220840
    159576 7pjm:A (2.1) BS03 CA 1.1.1.42 GO:0000287 ... O75874 35970853
    159577 7pjm:B (2.1) BS02 CA 1.1.1.42 GO:0000287 ... O75874 35970853
    159578 7pjm:C (2.1) BS01 CA 1.1.1.42 GO:0000287 ... O75874 35970853
    159579 7pjs:4 (2.35) BS02 ZN ? GO:0002181 ... P0A7Q6 N/A
    159580 7pjs:6 (2.35) BS02 ZN N/A GO:0003735 ... N/A N/A
    159581 7pjs:C (2.35) BS03 MG ? GO:0000027 ... P60422 N/A
    159582 7pjs:C (2.35) BS04 MG ? GO:0000027 ... P60422 N/A
    159583 7pjs:C (2.35) BS05 MG ? GO:0000027 ... P60422 N/A
    159584 7pjs:P (2.35) BS03 MG ? GO:0000027 ... P0A7K6 N/A
    159585 7pjs:l (2.35) BS02 MG ? GO:0000028 ... C3SQR7 N/A
    159586 7pjs:m (2.35) BS03 MG ? GO:0000028 ... C3SR52 N/A
    159587 7pjs:n (2.35) BS02 MG ? GO:0003735 ... C3SR07 N/A
    159588 7pjt:4 (6.0) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670
    159589 7pjt:6 (6.0) BS02 ZN N/A GO:0003735 ... N/A 34635670
    159590 7pju:4 (9.5) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670
    159591 7pju:6 (9.5) BS03 ZN N/A GO:0003735 ... N/A 34635670
    159592 7pjv:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670
    159593 7pjv:6 (3.1) BS02 ZN ? GO:0002181 ... P0A7M9 34635670
    159594 7pjv:C (3.1) BS03 MG ? GO:0000027 ... P60422 34635670
    159595 7pjv:C (3.1) BS04 MG ? GO:0000027 ... P60422 34635670
    159596 7pjv:P (3.1) BS03 MG ? GO:0000027 ... P0A7K6 34635670
    159597 7pjv:m (3.1) BS02 MG ? GO:0000049 ... P0A7S9 34635670
    159598 7pjv:n (3.1) BS02 MG ? GO:0003735 ... P0AG59 34635670
    159599 7pjv:x (3.1) BS04 MG 3.6.5.- GO:0003746 ... P0A6M8 34635670
    159600 7pjy:4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 34635670

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218