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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    158001 7obb:A (3.3) BS04 ZN 2.7.7.6 GO:0000287 ... O95602 34887565
    158002 7obb:B (3.3) BS01 ZN 2.7.7.6 GO:0000428 ... Q9H9Y6 34887565
    158003 7obb:I (3.3) BS01 ZN ? GO:0000428 ... Q9P1U0 34887565
    158004 7obb:I (3.3) BS02 ZN ? GO:0000428 ... Q9P1U0 34887565
    158005 7obb:J (3.3) BS01 ZN ? GO:0000428 ... P62875 34887565
    158006 7obb:L (3.3) BS01 ZN ? GO:0000428 ... P53803 34887565
    158007 7obd:A (2.0) BS03 MG ? GO:0000122 ... P31947 37130519
    158008 7obe:A (3.0) BS01 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    158009 7obe:A (3.0) BS02 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    158010 7obe:B (3.0) BS01 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    158011 7obe:B (3.0) BS02 MN 3.1.3.16 GO:0004721 ... Q84XU2 34721460
    158012 7obg:A (1.8) BS02 MG ? GO:0000122 ... P31947 37130519
    158013 7obk:A (1.8) BS02 MG ? GO:0000122 ... P31947 37130519
    158014 7obl:A (1.8) BS03 MG ? GO:0000122 ... P31947 37130519
    158015 7obq:v (3.9) BS01 MG ? GO:0005525 ... G1STG2 34260909
    158016 7obq:x (3.9) BS03 MG 3.6.5.4 GO:0003723 ... P61010 34260909
    158017 7obr:g (2.8) BS02 ZN ? GO:0003735 ... G1TXG5 34260909
    158018 7obr:j (2.8) BS03 ZN ? GO:0003723 ... U3KPD5 34260909
    158019 7obr:m (2.8) BS02 ZN ? GO:0003735 ... P63048 34260909
    158020 7obr:o (2.8) BS02 ZN ? GO:0003735 ... A0A5F9D391 34260909
    158021 7obr:p (2.8) BS02 ZN ? GO:0003735 ... G1SY53 34260909
    158022 7obs:A (1.8) BS02 CA ? GO:0000122 ... P31947 37130519
    158023 7obu:A (1.2) BS01 MG N/A GO:0003824 ... N/A 36214476
    158024 7obu:B (1.2) BS02 MG N/A GO:0003824 ... N/A 36214476
    158025 7obx:A (1.8) BS02 MG ? GO:0000122 ... P31947 37130519
    158026 7oc0:A (1.78) BS02 MG 2.3.1.179 GO:0004315 ... G3XDA2 34189850
    158027 7oc4:A (2.03) BS01 ZN 4.2.3.104 GO:0016114 ... A0A2U8U2L5 34180566
    158028 7oc4:B (2.03) BS01 ZN 4.2.3.104 GO:0016114 ... A0A2U8U2L5 34180566
    158029 7oc5:A (2.01) BS01 ZN 4.2.3.104 GO:0016114 ... A0A2U8U2L5 34180566
    158030 7oc5:B (2.01) BS01 ZN 4.2.3.104 GO:0016114 ... A0A2U8U2L5 34180566
    158031 7oc6:A (2.01) BS01 ZN 4.2.3.104 GO:0016114 ... A0A2U8U2L5 34180566
    158032 7oc7:A (1.95) BS01 ZN 3.4.24.26 GO:0004222 ... P14756 34762767
    158033 7oc7:A (1.95) BS03 CA 3.4.24.26 GO:0004222 ... P14756 34762767
    158034 7oc8:A (1.6) BS05 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    158035 7oc8:A (1.6) BS06 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    158036 7oc8:A (1.6) BS07 CO 3.2.1.91 GO:0004553 ... P62694 35997626
    158037 7och:L (3.14) BS01 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158038 7och:L (3.14) BS02 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158039 7ocn:A (2.6) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158040 7ocn:B (2.6) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158041 7ocp:A (2.75) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158042 7ocp:B (2.75) BS02 MG ? GO:0000166 ... D0C7J2 35363566
    158043 7ocq:A (2.9) BS02 MG ? GO:0000166 ... D0C7J2 35363566
    158044 7ocq:B (2.9) BS02 MG ? GO:0000166 ... D0C7J2 35363566
    158045 7ocr:A (2.6) BS02 MG ? GO:0000166 ... D0C7J2 35363566
    158046 7ocr:B (2.6) BS03 MG ? GO:0000166 ... D0C7J2 35363566
    158047 7ocs:A (2.3) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158048 7oct:A (2.85) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158049 7oct:B (2.85) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158050 7ocu:A (2.7) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158051 7ocu:B (2.7) BS01 MG ? GO:0000166 ... D0C7J2 35363566
    158052 7ocv:A (1.432) BS02 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 34255518
    158053 7od0:AAA (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158054 7od0:AAA (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158055 7od0:AAA (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158056 7od0:BBB (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158057 7od0:BBB (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158058 7od0:BBB (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158059 7od0:CCC (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158060 7od0:CCC (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158061 7od0:CCC (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158062 7od0:CCC (2.1) BS05 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158063 7od0:DDD (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158064 7od0:DDD (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158065 7od0:DDD (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158066 7od0:EEE (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158067 7od0:EEE (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158068 7od0:EEE (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158069 7od0:FFF (2.1) BS02 ZN ? GO:0008237 ... A0A0F7IPS1 34210221
    158070 7od0:FFF (2.1) BS03 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158071 7od0:FFF (2.1) BS04 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158072 7od0:FFF (2.1) BS05 CA ? GO:0008237 ... A0A0F7IPS1 34210221
    158073 7od1:A (2.45) BS01 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158074 7od1:A (2.45) BS02 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158075 7od1:A (2.45) BS03 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158076 7od1:A (2.45) BS04 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158077 7od1:A (2.45) BS05 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158078 7od1:A (2.45) BS06 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158079 7od1:B (2.45) BS01 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158080 7od1:B (2.45) BS02 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158081 7od1:B (2.45) BS03 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158082 7od1:B (2.45) BS04 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158083 7od1:B (2.45) BS05 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158084 7od1:B (2.45) BS06 ZN 2.3.2.31 GO:0000151 ... O95376 34518685
    158085 7od5:L (2.1) BS06 FE ? GO:0009772 ... Q3J1A5 35371503
    158086 7od5:M (2.1) BS08 FE ? GO:0009772 ... Q3J1A6 35371503
    158087 7od9:A (2.3) BS01 MG ? GO:0000160 ... G0H061 35606361
    158088 7od9:B (2.3) BS01 MG ? GO:0000160 ... G0H061 35606361
    158089 7odf:A (2.66) BS05 ZN N/A N/A N/A 34294706
    158090 7odg:L (1.62) BS02 MG 1.12.99.6 GO:0005515 ... P31891 N/A
    158091 7odh:L (1.34) BS02 MG 1.12.99.6 GO:0005515 ... P31891 N/A
    158092 7odr:0 (2.9) BS02 ZN ? GO:0003723 ... Q9BYC8 34135320
    158093 7odr:4 (2.9) BS02 ZN ? GO:0003735 ... Q9P0J6 34135320
    158094 7odr:i (2.9) BS02 MG ? GO:0003735 ... Q4U2R6 34135320
    158095 7ods:0 (3.1) BS02 ZN ? GO:0003723 ... Q9BYC8 34135320
    158096 7ods:4 (3.1) BS02 ZN ? GO:0003735 ... Q9P0J6 34135320
    158097 7ods:D (3.1) BS02 MG ? GO:0003723 ... Q5T653 34135320
    158098 7ods:i (3.1) BS02 MG ? GO:0003735 ... Q4U2R6 34135320
    158099 7odt:0 (3.1) BS02 ZN ? GO:0003723 ... Q9BYC8 34135320
    158100 7odt:4 (3.1) BS02 ZN ? GO:0003735 ... Q9P0J6 34135320
    158101 7odu:A (3.0) BS01 ZN ? N/A Q0H8B9 N/A
    158102 7odv:BBB (2.31) BS02 MG 2.7.10.1
    2.7.11.1    		 N/A Q94AG2 35169143
    158103 7odv:EEE (2.31) BS02 MG 2.7.10.1
    2.7.11.1    		 N/A Q94AG2 35169143
    158104 7ody:A (1.43) BS02 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158105 7ody:A (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158106 7ody:A (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158107 7ody:B (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158108 7ody:B (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158109 7ody:B (1.43) BS05 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158110 7ody:C (1.43) BS02 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158111 7ody:C (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158112 7ody:C (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158113 7ody:D (1.43) BS03 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158114 7ody:D (1.43) BS04 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158115 7ody:D (1.43) BS05 MN 3.6.1.9 GO:0000166 ... A0A7U3TBV3 34354070
    158116 7oe3:L (3.35) BS01 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158117 7oe3:L (3.35) BS02 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158118 7oe7:L (3.73) BS01 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158119 7oea:L (2.7) BS02 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158120 7oea:L (2.7) BS03 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158121 7oeb:L (3.04) BS02 ZN 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158122 7oeb:L (3.04) BS03 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158123 7oeb:L (3.04) BS04 MG 2.7.7.48
    3.1.-.-    		 GO:0000166 ... A0A3S8NV63 34857749
    158124 7oem:A (2.2) BS01 MG 2.1.1.348 GO:0001510 ... Q86U44 N/A
    158125 7oem:B (2.2) BS01 MG ? N/A Q9HCE5 N/A
    158126 7oez:A (2.48) BS01 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    158127 7oez:A (2.48) BS02 ZN 3.4.11.- GO:0006508 ... Q2U1F3 33989771
    158128 7of0:0 (2.2) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158129 7of0:4 (2.2) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158130 7of0:r (2.2) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158131 7of1:b (3.1) BS02 MG ? GO:0000054 ... Q02892 34813592
    158132 7of1:m (3.1) BS02 MG ? GO:0000055 ... P53742 34813592
    158133 7of2:0 (2.7) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158134 7of2:4 (2.7) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158135 7of2:C (2.7) BS03 MG ? GO:0005525 ... O43824 34135319
    158136 7of2:r (2.7) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158137 7of3:0 (2.7) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158138 7of3:4 (2.7) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158139 7of3:r (2.7) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158140 7of4:0 (2.7) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158141 7of4:4 (2.7) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158142 7of4:C (2.7) BS03 MG ? GO:0005525 ... O43824 34135319
    158143 7of4:r (2.7) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158144 7of5:0 (2.9) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158145 7of5:4 (2.9) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158146 7of5:r (2.9) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158147 7of6:0 (2.6) BS02 ZN ? GO:0003723 ... Q9BYC8 34135319
    158148 7of6:4 (2.6) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158149 7of6:r (2.6) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158150 7of7:0 (2.5) BS02 ZN ? GO:0003735 ... Q9BYC8 34135319
    158151 7of7:4 (2.5) BS02 ZN ? GO:0003735 ... Q9P0J6 34135319
    158152 7of7:r (2.5) BS02 ZN ? GO:0003735 ... Q9NVS2 34135319
    158153 7ofl:A (1.83) BS02 MG 4.2.3.- GO:0016829 ... A0A5M3MXY8 35440053
    158154 7ofl:B (1.83) BS02 MG 4.2.3.- GO:0016829 ... A0A5M3MXY8 35440053
    158155 7ofq:A (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158156 7ofq:B (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158157 7ofq:C (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158158 7ofq:D (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158159 7ofq:E (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158160 7ofq:F (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158161 7ofq:G (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158162 7ofq:H (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158163 7ofq:I (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158164 7ofq:J (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158165 7ofq:K (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158166 7ofq:L (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158167 7ofq:M (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158168 7ofq:N (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158169 7ofq:O (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158170 7ofq:P (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158171 7ofq:Q (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158172 7ofq:R (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158173 7ofq:S (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158174 7ofq:T (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158175 7ofq:U (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158176 7ofq:V (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158177 7ofq:W (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158178 7ofq:X (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158179 7ofq:Y (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158180 7ofq:Z (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158181 7ofq:a (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158182 7ofq:b (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158183 7ofq:c (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158184 7ofq:d (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158185 7ofq:e (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158186 7ofq:f (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158187 7ofq:g (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158188 7ofq:h (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158189 7ofq:i (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158190 7ofq:j (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158191 7ofq:k (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158192 7ofq:l (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158193 7ofq:m (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158194 7ofq:n (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158195 7ofq:o (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158196 7ofq:p (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158197 7ofq:q (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158198 7ofq:r (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158199 7ofq:s (3.08) BS01 CA N/A GO:0005198 ... N/A 35132062
    158200 7ofs:A (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 35953531
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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